Wall clock time and date at job start Tue Mar 31 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47502 * 2 1 4 4 C 1.42894 * 114.00330 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47426 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46911 * 304.99985 * 5 4 3 7 7 O 1.42900 * 109.47122 * 64.99522 * 5 4 3 8 8 C 1.52998 * 109.47167 * 184.99704 * 5 4 3 9 9 N 1.46897 * 109.47040 * 178.33263 * 8 5 4 10 10 C 1.46901 * 110.99890 * 288.56515 * 9 8 5 11 11 C 1.50694 * 109.47508 * 299.96521 * 10 9 8 12 12 H 1.08001 * 119.99866 * 4.21426 * 11 10 9 13 13 C 1.37881 * 120.00407 * 184.22360 * 11 10 9 14 14 N 1.31517 * 119.99361 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00235 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47105 * 119.99360 * 15 13 11 18 18 H 1.48501 * 109.46892 * 239.99559 * 15 13 11 19 19 C 1.46900 * 111.00046 * 164.61548 * 9 8 5 20 20 C 1.50704 * 109.47116 * 190.00232 * 19 9 8 21 21 C 1.38231 * 120.00185 * 89.99748 * 20 19 9 22 22 C 1.38235 * 120.00026 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00081 * 0.06385 * 22 21 20 24 24 C 1.38230 * 119.99904 * 359.91643 * 23 22 21 25 25 C 1.38234 * 119.99583 * 269.97706 * 20 19 9 26 26 H 1.09005 * 109.46561 * 60.00172 * 1 2 3 27 27 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47128 * 300.00627 * 1 2 3 29 29 H 1.09001 * 109.47128 * 239.99373 * 2 1 3 30 30 H 1.09005 * 109.46561 * 119.99828 * 2 1 3 31 31 H 1.08998 * 109.47576 * 59.99202 * 4 3 2 32 32 H 1.09009 * 109.46761 * 300.00146 * 4 3 2 33 33 H 0.96703 * 113.99706 * 60.00371 * 7 5 4 34 34 H 1.09003 * 109.47278 * 58.33407 * 8 5 4 35 35 H 1.08994 * 109.47303 * 298.33188 * 8 5 4 36 36 H 1.09002 * 109.47233 * 59.96735 * 10 9 8 37 37 H 1.09006 * 109.47234 * 179.97438 * 10 9 8 38 38 H 0.97006 * 119.99385 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47384 * 69.99941 * 19 9 8 40 40 H 1.09004 * 109.46638 * 309.99371 * 19 9 8 41 41 H 1.08002 * 120.00203 * 359.69727 * 21 20 19 42 42 H 1.07999 * 120.00159 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.00395 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00442 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.00267 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 1 3.3500 3.4415 -0.8407 7 8 3.3977 3.5450 1.2222 8 6 5.3455 3.0604 -0.1238 9 7 5.7210 4.4801 -0.1634 10 6 5.3290 5.0929 -1.4397 11 6 6.0200 4.3793 -2.5729 12 1 6.6300 3.5109 -2.3722 13 6 5.8737 4.8349 -3.8660 14 7 5.1305 5.8922 -4.1103 15 14 6.7297 3.9499 -5.2707 16 1 7.4991 2.7984 -4.7346 17 1 5.7154 3.4604 -6.2386 18 1 7.6555 4.8876 -5.9555 19 6 7.1590 4.6513 0.0830 20 6 7.4644 6.1140 0.2789 21 6 7.4169 6.6664 1.5452 22 6 7.6976 8.0080 1.7250 23 6 8.0244 8.7975 0.6383 24 6 8.0722 8.2450 -0.6279 25 6 7.7924 6.9031 -0.8076 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8342 0.9763 -0.8890 32 1 3.8333 0.9766 0.8909 33 1 3.7822 3.1467 2.0151 34 1 5.6751 2.5717 -1.0407 35 1 5.8201 2.5829 0.7333 36 1 4.2491 5.0129 -1.5646 37 1 5.6183 6.1438 -1.4421 38 1 5.0279 6.2130 -5.0200 39 1 7.7215 4.2739 -0.7710 40 1 7.4426 4.0979 0.9782 41 1 7.1562 6.0509 2.3935 42 1 7.6601 8.4397 2.7142 43 1 8.2440 9.8455 0.7788 44 1 8.3280 8.8616 -1.4769 45 1 7.8302 6.4714 -1.7967 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107346285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:04 Heat of formation + Delta-G solvation = -93.857057 kcal Electronic energy + Delta-G solvation = -23988.247407 eV Core-core repulsion = 20583.710020 eV Total energy + Delta-G solvation = -3404.537387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38557 -39.57602 -38.32330 -36.87407 -34.56135 -32.84873 -32.27179 -31.64235 -30.52024 -28.96310 -26.82398 -25.76029 -23.66800 -23.57690 -23.24427 -21.96314 -21.27633 -18.70199 -17.84623 -17.56184 -17.38514 -16.98899 -16.75613 -16.33788 -16.10809 -15.93975 -15.69228 -15.18125 -14.95636 -14.53020 -14.16595 -14.11355 -13.88567 -13.61577 -13.31281 -13.22198 -13.06145 -12.86356 -12.68900 -12.49355 -12.34920 -12.28168 -12.20891 -12.12134 -11.73634 -11.68193 -11.59518 -11.42414 -10.78473 -10.58639 -10.54915 -9.64109 -9.52272 -8.89595 -8.10773 -6.30470 0.59759 0.66292 1.33277 1.35487 1.45240 2.36327 2.59048 3.00452 3.13271 3.54571 3.73069 3.98796 4.08744 4.13373 4.16653 4.19791 4.29456 4.32474 4.36565 4.42183 4.48980 4.50818 4.53772 4.62571 4.76476 4.83721 4.87808 4.92109 4.99823 5.02668 5.19599 5.26190 5.26448 5.32384 5.34278 5.43123 5.70304 5.75878 5.81297 5.92296 6.08681 6.25914 6.28984 6.31614 6.57923 6.90839 7.08125 7.39942 8.90530 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.005101 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.290751 B = 5487.816765 C = 7431.714303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.410 6.410 4 C 0.042 3.958 5 C 0.126 3.874 6 H 0.059 0.941 7 O -0.558 6.558 8 C 0.036 3.964 9 N -0.525 5.525 10 C 0.202 3.798 11 C -0.544 4.544 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.924 5.924 15 Si 0.947 3.053 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.100 3.900 20 C -0.080 4.080 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.141 4.141 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.380 0.620 34 H 0.040 0.960 35 H 0.096 0.904 36 H -0.011 1.011 37 H 0.015 0.985 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -7.477 12.474 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.330 6.330 4 C -0.035 4.035 5 C 0.066 3.934 6 H 0.078 0.922 7 O -0.364 6.364 8 C -0.093 4.093 9 N -0.247 5.247 10 C 0.076 3.924 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.564 5.564 15 Si 0.773 3.227 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.027 4.027 20 C -0.080 4.080 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.159 4.159 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.229 0.771 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.007 0.993 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.050 -6.614 12.309 14.013 hybrid contribution 1.019 -1.070 -2.023 2.505 sum 2.068 -7.684 10.287 13.005 Atomic orbital electron populations 1.21768 0.93074 1.03395 1.02417 1.22705 0.96387 0.82928 1.00908 1.87949 1.21364 1.28089 1.95563 1.23155 0.81587 0.96904 1.01874 1.21600 0.93378 0.91019 0.87360 0.92243 1.86626 1.72094 1.62161 1.15521 1.22559 0.94997 0.90214 1.01513 1.62378 1.14529 1.13656 1.34165 1.19394 0.93619 0.94719 0.84707 1.21918 1.30044 1.13226 0.93099 0.92238 1.25719 0.95840 0.95524 1.01311 1.70103 1.40233 1.25122 1.20931 0.85675 0.78482 0.78925 0.79653 1.18731 1.20840 1.20711 1.20943 0.89016 0.92567 1.00183 1.19881 0.98416 0.96069 0.93660 1.21228 0.99188 0.96033 0.96337 1.21437 0.99730 0.93625 0.99837 1.21384 1.00289 1.00781 0.92129 1.21296 1.01422 0.94763 0.98425 1.21192 0.99151 0.95019 0.98325 0.93130 0.88623 0.92241 0.93103 0.91734 0.92479 0.90177 0.77146 0.94170 0.88624 0.99255 0.96672 0.92917 0.95335 0.88912 0.84438 0.83242 0.83775 0.86111 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.28 71.98 0.74 -2.18 16 2 C 0.05 1.05 6.66 71.98 0.48 1.53 16 3 O -0.41 -12.89 10.31 -144.34 -1.49 -14.37 16 4 C 0.04 1.20 5.57 71.98 0.40 1.60 16 5 C 0.13 4.55 3.25 30.59 0.10 4.65 16 6 H 0.06 2.77 6.68 -2.39 -0.02 2.75 16 7 O -0.56 -19.56 13.20 -144.34 -1.91 -21.47 16 8 C 0.04 1.26 4.45 86.30 0.38 1.65 16 9 N -0.52 -21.91 4.56 -905.37 -4.13 -26.03 16 10 C 0.20 10.68 4.61 85.55 0.39 11.08 16 11 C -0.54 -29.33 7.24 25.60 0.19 -29.14 16 12 H 0.06 3.11 5.94 -2.91 -0.02 3.09 16 13 C 0.02 0.87 5.46 84.66 0.46 1.33 16 14 N -0.92 -55.55 13.29 21.45 0.28 -55.27 16 15 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 C 0.10 3.75 4.94 85.56 0.42 4.17 16 20 C -0.08 -3.01 4.89 -19.87 -0.10 -3.10 16 21 C -0.11 -3.41 9.70 22.27 0.22 -3.20 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 23 C -0.13 -3.71 10.05 22.27 0.22 -3.48 16 24 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 25 C -0.12 -4.87 7.91 22.27 0.18 -4.69 16 26 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.38 9.34 9.05 -74.06 -0.67 8.67 16 34 H 0.04 1.57 6.10 -2.39 -0.01 1.56 16 35 H 0.10 2.58 7.82 -2.39 -0.02 2.56 16 36 H -0.01 -0.64 6.65 -2.39 -0.02 -0.65 16 37 H 0.02 0.89 5.89 -2.38 -0.01 0.87 16 38 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 39 H 0.03 1.18 6.59 -2.39 -0.02 1.17 16 40 H 0.09 2.78 7.81 -2.39 -0.02 2.76 16 41 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 44 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 45 H 0.09 4.51 7.87 -2.91 -0.02 4.49 16 Total: -1.00 -70.03 365.23 -0.38 -70.40 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.30 Total: 28.87 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 4.53 Total: -27.86 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.84 Total: -81.30 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -3.39 Total: -35.84 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.03 -0.38 -70.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107346285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.453 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds