Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47172 * 2 1 4 4 C 1.35990 * 117.00242 * 179.97438 * 3 2 1 5 5 C 1.38566 * 120.07399 * 0.02854 * 4 3 2 6 6 C 1.38233 * 120.00312 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.14678 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.92885 * 180.02562 * 7 6 5 9 9 N 1.46495 * 109.47403 * 89.99570 * 8 7 6 10 10 C 1.36930 * 120.00313 * 90.00091 * 9 8 7 11 11 H 1.08001 * 120.00362 * 214.01035 * 10 9 8 12 12 C 1.38814 * 119.99668 * 34.00980 * 10 9 8 13 13 N 1.31621 * 120.00436 * 22.93499 * 12 10 9 14 14 Si 1.86804 * 119.99985 * 202.93456 * 12 10 9 15 15 H 1.48503 * 109.47018 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47066 * 119.99623 * 14 12 10 17 17 H 1.48497 * 109.47029 * 240.00111 * 14 12 10 18 18 C 1.46509 * 119.99900 * 270.00053 * 9 8 7 19 19 C 1.52997 * 109.46983 * 95.65670 * 18 9 8 20 20 C 1.38243 * 120.14784 * 0.03479 * 7 6 5 21 21 C 1.38570 * 119.99657 * 359.96434 * 20 7 6 22 22 O 1.35988 * 120.07204 * 180.29795 * 21 20 7 23 23 C 1.42901 * 117.00361 * 359.71853 * 22 21 20 24 24 C 1.52996 * 109.47434 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.47046 * 59.99601 * 1 2 3 26 26 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47415 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.47425 * 240.00464 * 2 1 3 29 29 H 1.08997 * 109.47272 * 120.00008 * 2 1 3 30 30 H 1.08007 * 119.99602 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.92771 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47548 * 209.99883 * 8 7 6 33 33 H 1.09008 * 109.46866 * 329.99324 * 8 7 6 34 34 H 0.96997 * 120.00236 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.46788 * 215.65672 * 18 9 8 36 36 H 1.08995 * 109.47086 * 335.65463 * 18 9 8 37 37 H 1.09008 * 109.47107 * 59.99973 * 19 18 9 38 38 H 1.09001 * 109.47181 * 180.02562 * 19 18 9 39 39 H 1.08996 * 109.47109 * 300.00142 * 19 18 9 40 40 H 1.07999 * 120.00245 * 179.97438 * 20 7 6 41 41 H 1.09009 * 109.46647 * 300.00527 * 23 22 21 42 42 H 1.09000 * 109.46804 * 60.00042 * 23 22 21 43 43 H 1.08996 * 109.47039 * 299.99733 * 24 23 22 44 44 H 1.09000 * 109.47459 * 59.99992 * 24 23 22 45 45 H 1.09001 * 109.47071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2001 0.4277 0.0005 6 6 5.5703 0.6106 0.0005 7 6 6.1003 1.8875 0.0000 8 6 7.5948 2.0812 -0.0005 9 7 8.0787 2.1435 -1.3818 10 6 8.1525 3.3487 -2.0277 11 1 7.9639 3.4047 -3.0897 12 6 8.4696 4.4985 -1.3175 13 7 9.1244 4.4094 -0.1792 14 14 7.9670 6.1723 -1.9773 15 1 7.2476 6.0011 -3.2651 16 1 7.0757 6.8434 -0.9973 17 1 9.1786 7.0029 -2.1944 18 6 8.4837 0.9164 -2.0723 19 6 7.3139 0.3910 -2.9068 20 6 5.2625 2.9871 0.0003 21 6 3.8880 2.8108 0.0003 22 8 3.0624 3.8913 -0.0056 23 6 3.6802 5.1799 -0.0053 24 6 2.6000 6.2634 -0.0116 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.7885 -0.5708 0.0004 31 1 6.2282 -0.2459 0.0008 32 1 7.8410 3.0105 0.5130 33 1 8.0697 1.2453 0.5135 34 1 9.3462 5.2128 0.3168 35 1 9.3294 1.1296 -2.7259 36 1 8.7726 0.1648 -1.3378 37 1 7.0250 1.1428 -3.6413 38 1 7.6150 -0.5222 -3.4201 39 1 6.4681 0.1779 -2.2531 40 1 5.6791 3.9835 0.0004 41 1 4.2966 5.2870 0.8874 42 1 4.3046 5.2836 -0.8926 43 1 1.9833 6.1564 -0.9040 44 1 1.9758 6.1595 0.8759 45 1 3.0713 7.2463 -0.0119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118001841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = -39.230617 kcal Electronic energy + Delta-G solvation = -24672.482948 eV Core-core repulsion = 21270.314342 eV Total energy + Delta-G solvation = -3402.168606 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07058 -38.21588 -37.15387 -35.31497 -32.06883 -31.90470 -31.29079 -30.36857 -29.07174 -28.27273 -25.48495 -24.10375 -23.32405 -22.93885 -21.18050 -20.71909 -20.04971 -18.10711 -16.99805 -16.37813 -16.03536 -15.88502 -15.50865 -14.91067 -14.29139 -13.89801 -13.84398 -13.62172 -13.55504 -13.26751 -12.77374 -12.63218 -12.49068 -12.40500 -12.37830 -12.13000 -11.64986 -11.54460 -11.38985 -11.15935 -11.10611 -10.81593 -10.71255 -10.54931 -10.45010 -10.43695 -10.26622 -10.01022 -9.91257 -9.65504 -8.54014 -8.05475 -7.17997 -6.65284 -5.83685 -3.36117 1.91212 2.06812 3.27803 3.38857 3.42827 3.50417 3.61641 4.30812 4.46764 4.94644 5.00848 5.19404 5.20927 5.24809 5.26264 5.36888 5.42608 5.52876 5.61950 5.62125 5.71815 5.77562 5.86085 5.96879 6.00335 6.01698 6.06701 6.11947 6.18094 6.27553 6.39409 6.42930 6.64296 6.65319 6.76716 6.91583 6.98191 7.17134 7.31997 7.37270 7.51109 7.70316 7.79141 8.08746 8.46226 9.13797 9.77769 10.34279 11.16052 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.006226 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.611681 B = 4495.967161 C = 6054.560090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.312 6.312 4 C 0.074 3.926 5 C -0.177 4.177 6 C -0.120 4.120 7 C -0.062 4.062 8 C 0.171 3.829 9 N -0.576 5.576 10 C -0.247 4.247 11 H 0.061 0.939 12 C 0.009 3.991 13 N -0.885 5.885 14 Si 0.884 3.116 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.288 1.288 18 C 0.143 3.857 19 C -0.170 4.170 20 C -0.149 4.149 21 C 0.095 3.905 22 O -0.312 6.312 23 C 0.052 3.948 24 C -0.147 4.147 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.050 0.950 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 -5.781 2.052 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.227 6.227 4 C 0.029 3.971 5 C -0.196 4.196 6 C -0.139 4.139 7 C -0.065 4.065 8 C 0.045 3.955 9 N -0.295 5.295 10 C -0.377 4.377 11 H 0.079 0.921 12 C -0.191 4.191 13 N -0.528 5.528 14 Si 0.713 3.287 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.215 1.215 18 C 0.017 3.983 19 C -0.230 4.230 20 C -0.169 4.169 21 C 0.050 3.950 22 O -0.227 6.227 23 C -0.023 4.023 24 C -0.204 4.204 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.453 -5.492 2.138 13.777 hybrid contribution -0.019 0.729 -0.439 0.851 sum -12.472 -4.763 1.699 13.459 Atomic orbital electron populations 1.21740 0.93325 1.02258 1.03337 1.22640 0.95374 0.83097 1.00867 1.86107 1.18913 1.27733 1.89911 1.18006 0.82305 0.91173 1.05591 1.20883 0.94235 0.96497 1.07952 1.20713 0.93431 0.97165 1.02569 1.20993 0.99785 0.91250 0.94495 1.20101 0.84756 1.03013 0.87621 1.43766 1.71974 1.02389 1.11409 1.19070 1.40648 0.84414 0.93522 0.92147 1.25017 0.98019 0.98151 0.97886 1.69981 1.38199 1.27799 1.16846 0.86501 0.78479 0.84832 0.78853 1.19983 1.21219 1.21503 1.20845 0.94349 0.88562 0.94560 1.22396 1.01000 0.98996 1.00611 1.21059 0.90020 1.00810 1.04981 1.18270 0.89177 0.84755 1.02842 1.86058 1.34377 1.12768 1.89475 1.22733 0.96352 0.81439 1.01818 1.21731 0.98871 0.96811 1.03023 0.91710 0.90839 0.91732 0.92579 0.92609 0.86005 0.86596 0.87450 0.94726 0.93524 0.93787 0.94688 0.93396 0.94708 0.93052 0.84983 0.92197 0.91945 0.91782 0.91836 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.69 5.46 37.16 0.20 0.89 16 3 O -0.31 -5.33 9.92 -34.21 -0.34 -5.67 16 4 C 0.07 1.38 6.70 -39.12 -0.26 1.11 16 5 C -0.18 -2.98 9.04 -39.46 -0.36 -3.34 16 6 C -0.12 -2.18 7.86 -39.58 -0.31 -2.49 16 7 C -0.06 -1.29 5.44 -104.61 -0.57 -1.86 16 8 C 0.17 3.93 5.45 -5.20 -0.03 3.91 16 9 N -0.58 -13.97 2.44 -174.61 -0.43 -14.40 16 10 C -0.25 -6.56 9.48 -15.06 -0.14 -6.71 16 11 H 0.06 1.64 7.93 -52.49 -0.42 1.23 16 12 C 0.01 0.23 4.95 -17.43 -0.09 0.15 16 13 N -0.89 -24.43 11.31 55.49 0.63 -23.80 16 14 Si 0.88 20.84 29.61 -169.99 -5.03 15.80 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 19 C -0.17 -3.20 10.20 37.16 0.38 -2.82 16 20 C -0.15 -3.14 8.69 -39.46 -0.34 -3.49 16 21 C 0.09 1.90 6.70 -39.12 -0.26 1.64 16 22 O -0.31 -5.99 9.92 -34.20 -0.34 -6.33 16 23 C 0.05 0.86 5.46 37.16 0.20 1.07 16 24 C -0.15 -1.91 10.28 37.16 0.38 -1.53 16 25 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 30 H 0.12 1.68 6.30 -52.48 -0.33 1.35 16 31 H 0.12 1.92 8.02 -52.49 -0.42 1.50 16 32 H 0.11 2.77 5.26 -51.93 -0.27 2.50 16 33 H 0.03 0.75 7.80 -51.92 -0.40 0.34 16 34 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 37 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.96 6.13 -51.93 -0.32 0.65 16 40 H 0.13 2.92 6.30 -52.49 -0.33 2.59 16 41 H 0.06 0.98 7.67 -51.92 -0.40 0.58 16 42 H 0.06 1.10 7.66 -51.93 -0.40 0.71 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -29.41 364.72 -8.28 -37.70 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.43 Total: 2.77 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.84 Total: -11.57 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.20 Total: -38.20 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.68 Total: -12.00 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.41 -8.28 -37.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118001841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.536 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds