Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47172 * 2 1 4 4 C 1.35990 * 117.00242 * 179.97438 * 3 2 1 5 5 C 1.38566 * 120.07399 * 0.02854 * 4 3 2 6 6 C 1.38233 * 120.00312 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.14678 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.92885 * 180.02562 * 7 6 5 9 9 N 1.46495 * 109.47403 * 89.99570 * 8 7 6 10 10 C 1.36930 * 120.00313 * 90.00091 * 9 8 7 11 11 H 1.08001 * 120.00362 * 214.01035 * 10 9 8 12 12 C 1.38814 * 119.99668 * 34.00980 * 10 9 8 13 13 N 1.31621 * 120.00436 * 22.93499 * 12 10 9 14 14 Si 1.86804 * 119.99985 * 202.93456 * 12 10 9 15 15 H 1.48503 * 109.47018 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47066 * 119.99623 * 14 12 10 17 17 H 1.48497 * 109.47029 * 240.00111 * 14 12 10 18 18 C 1.46509 * 119.99900 * 270.00053 * 9 8 7 19 19 C 1.52997 * 109.46983 * 95.65670 * 18 9 8 20 20 C 1.38243 * 120.14784 * 0.03479 * 7 6 5 21 21 C 1.38570 * 119.99657 * 359.96434 * 20 7 6 22 22 O 1.35988 * 120.07204 * 180.29795 * 21 20 7 23 23 C 1.42901 * 117.00361 * 359.71853 * 22 21 20 24 24 C 1.52996 * 109.47434 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.47046 * 59.99601 * 1 2 3 26 26 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47415 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.47425 * 240.00464 * 2 1 3 29 29 H 1.08997 * 109.47272 * 120.00008 * 2 1 3 30 30 H 1.08007 * 119.99602 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.92771 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47548 * 209.99883 * 8 7 6 33 33 H 1.09008 * 109.46866 * 329.99324 * 8 7 6 34 34 H 0.96997 * 120.00236 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.46788 * 215.65672 * 18 9 8 36 36 H 1.08995 * 109.47086 * 335.65463 * 18 9 8 37 37 H 1.09008 * 109.47107 * 59.99973 * 19 18 9 38 38 H 1.09001 * 109.47181 * 180.02562 * 19 18 9 39 39 H 1.08996 * 109.47109 * 300.00142 * 19 18 9 40 40 H 1.07999 * 120.00245 * 179.97438 * 20 7 6 41 41 H 1.09009 * 109.46647 * 300.00527 * 23 22 21 42 42 H 1.09000 * 109.46804 * 60.00042 * 23 22 21 43 43 H 1.08996 * 109.47039 * 299.99733 * 24 23 22 44 44 H 1.09000 * 109.47459 * 59.99992 * 24 23 22 45 45 H 1.09001 * 109.47071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2001 0.4277 0.0005 6 6 5.5703 0.6106 0.0005 7 6 6.1003 1.8875 0.0000 8 6 7.5948 2.0812 -0.0005 9 7 8.0787 2.1435 -1.3818 10 6 8.1525 3.3487 -2.0277 11 1 7.9639 3.4047 -3.0897 12 6 8.4696 4.4985 -1.3175 13 7 9.1244 4.4094 -0.1792 14 14 7.9670 6.1723 -1.9773 15 1 7.2476 6.0011 -3.2651 16 1 7.0757 6.8434 -0.9973 17 1 9.1786 7.0029 -2.1944 18 6 8.4837 0.9164 -2.0723 19 6 7.3139 0.3910 -2.9068 20 6 5.2625 2.9871 0.0003 21 6 3.8880 2.8108 0.0003 22 8 3.0624 3.8913 -0.0056 23 6 3.6802 5.1799 -0.0053 24 6 2.6000 6.2634 -0.0116 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.7885 -0.5708 0.0004 31 1 6.2282 -0.2459 0.0008 32 1 7.8410 3.0105 0.5130 33 1 8.0697 1.2453 0.5135 34 1 9.3462 5.2128 0.3168 35 1 9.3294 1.1296 -2.7259 36 1 8.7726 0.1648 -1.3378 37 1 7.0250 1.1428 -3.6413 38 1 7.6150 -0.5222 -3.4201 39 1 6.4681 0.1779 -2.2531 40 1 5.6791 3.9835 0.0004 41 1 4.2966 5.2870 0.8874 42 1 4.3046 5.2836 -0.8926 43 1 1.9833 6.1564 -0.9040 44 1 1.9758 6.1595 0.8759 45 1 3.0713 7.2463 -0.0119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118001841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = -53.829855 kcal Electronic energy + Delta-G solvation = -24673.116019 eV Core-core repulsion = 21270.314342 eV Total energy + Delta-G solvation = -3402.801677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47983 -39.53133 -38.72908 -36.96504 -33.84359 -33.22241 -32.41381 -31.81835 -30.57618 -29.91470 -27.22212 -25.53557 -24.89502 -24.00343 -22.69740 -22.21146 -21.63864 -19.48871 -18.69305 -17.98193 -17.36410 -17.29163 -16.76843 -16.69357 -15.70110 -15.62066 -15.58333 -15.20732 -14.89050 -14.45285 -14.16688 -14.06675 -13.83896 -13.54658 -13.45812 -13.29634 -13.20332 -13.04592 -12.89715 -12.69679 -12.59426 -12.47079 -12.29958 -12.08411 -11.96188 -11.78136 -11.74951 -11.67658 -11.59280 -11.25469 -10.53376 -9.54821 -8.64875 -8.59093 -7.83829 -5.40524 0.44020 0.57089 1.37408 1.42783 1.51842 2.25943 2.33110 2.47785 2.83053 3.22814 3.87055 3.87829 3.94736 4.01111 4.11148 4.11261 4.20194 4.28415 4.29059 4.39544 4.45528 4.49713 4.59643 4.65737 4.78790 4.80842 4.86126 4.86761 4.90899 4.98039 4.99364 5.09287 5.12847 5.22552 5.30335 5.33401 5.45291 5.56873 5.61379 5.73507 5.84078 5.98503 6.18247 6.46597 6.70487 7.15617 7.86755 8.37100 9.11944 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.006226 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.611681 B = 4495.967161 C = 6054.560090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.075 3.925 5 C -0.164 4.164 6 C -0.112 4.112 7 C -0.080 4.080 8 C 0.177 3.823 9 N -0.591 5.591 10 C -0.254 4.254 11 H 0.048 0.952 12 C -0.028 4.028 13 N -0.911 5.911 14 Si 0.932 3.068 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.289 1.289 18 C 0.138 3.862 19 C -0.156 4.156 20 C -0.163 4.163 21 C 0.075 3.925 22 O -0.321 6.321 23 C 0.047 3.953 24 C -0.140 4.140 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.162 0.838 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.252 0.748 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 -7.708 1.942 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.030 3.970 5 C -0.183 4.183 6 C -0.131 4.131 7 C -0.083 4.083 8 C 0.052 3.948 9 N -0.311 5.311 10 C -0.385 4.385 11 H 0.065 0.935 12 C -0.225 4.225 13 N -0.555 5.555 14 Si 0.761 3.239 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.215 1.215 18 C 0.013 3.987 19 C -0.216 4.216 20 C -0.183 4.183 21 C 0.030 3.970 22 O -0.236 6.236 23 C -0.028 4.028 24 C -0.197 4.197 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.383 -7.440 2.024 16.319 hybrid contribution 0.501 1.221 -0.393 1.377 sum -13.882 -6.219 1.631 15.299 Atomic orbital electron populations 1.21780 0.91467 1.04129 1.02895 1.23069 0.96934 0.81036 1.02147 1.86107 1.17837 1.30976 1.89554 1.18202 0.83510 0.90929 1.04351 1.21229 0.93340 0.97803 1.05910 1.20886 0.94482 0.96440 1.01317 1.20777 0.98305 0.92566 0.96645 1.19885 0.86497 1.01627 0.86832 1.43954 1.72689 1.02702 1.11768 1.19130 1.40259 0.85905 0.93206 0.93475 1.25513 0.98251 1.00531 0.98238 1.70078 1.39410 1.28198 1.17847 0.85752 0.78022 0.81802 0.78368 1.19982 1.20597 1.21546 1.20983 0.94935 0.87858 0.94942 1.22220 0.99925 0.99597 0.99808 1.20897 0.90915 0.99982 1.06503 1.18471 0.88894 0.85957 1.03665 1.86046 1.34689 1.13357 1.89491 1.22904 0.97582 0.81618 1.00706 1.21748 0.97987 0.96177 1.03750 0.92307 0.87769 0.92063 0.91400 0.91006 0.82095 0.84411 0.90710 0.93854 0.93807 0.94912 0.92812 0.95544 0.91395 0.92909 0.87353 0.92658 0.93836 0.91342 0.90759 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.04 0.90 5.46 71.98 0.39 1.30 16 3 O -0.33 -10.60 9.92 -79.57 -0.79 -11.39 16 4 C 0.08 2.68 6.70 22.57 0.15 2.83 16 5 C -0.16 -5.05 9.04 22.35 0.20 -4.85 16 6 C -0.11 -3.85 7.86 22.27 0.18 -3.67 16 7 C -0.08 -3.34 5.44 -19.86 -0.11 -3.45 16 8 C 0.18 8.30 5.45 85.63 0.47 8.77 16 9 N -0.59 -29.03 2.44 -706.36 -1.73 -30.76 16 10 C -0.25 -13.92 9.48 84.04 0.80 -13.12 16 11 H 0.05 2.65 7.93 -2.91 -0.02 2.63 16 12 C -0.03 -1.53 4.95 84.86 0.42 -1.11 16 13 N -0.91 -51.95 11.31 21.65 0.24 -51.71 16 14 Si 0.93 44.03 29.61 68.60 2.03 46.06 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 18 C 0.14 5.67 6.44 86.38 0.56 6.23 16 19 C -0.16 -5.58 10.20 71.98 0.73 -4.85 16 20 C -0.16 -7.10 8.69 22.35 0.19 -6.90 16 21 C 0.08 3.04 6.70 22.57 0.15 3.19 16 22 O -0.32 -12.47 9.92 -79.55 -0.79 -13.26 16 23 C 0.05 1.61 5.46 71.98 0.39 2.00 16 24 C -0.14 -3.51 10.28 71.98 0.74 -2.77 16 25 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 29 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 30 H 0.16 3.64 6.30 -2.91 -0.02 3.62 16 31 H 0.14 4.09 8.02 -2.91 -0.02 4.06 16 32 H 0.08 4.04 5.26 -2.39 -0.01 4.02 16 33 H 0.04 1.88 7.80 -2.38 -0.02 1.86 16 34 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 36 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 37 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.85 6.13 -2.39 -0.01 1.84 16 40 H 0.11 5.12 6.30 -2.91 -0.02 5.10 16 41 H 0.06 1.89 7.67 -2.38 -0.02 1.87 16 42 H 0.04 1.62 7.66 -2.39 -0.02 1.60 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.15 364.72 5.93 -59.22 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.95 Total: 19.86 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 6.01 Total: -18.03 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.48 Total: -82.47 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.58 Total: -24.64 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.15 5.93 -59.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118001841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.387 kcal (2) G-P(sol) polarization free energy of solvation -65.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds