Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47041 * 2 1 4 4 C 1.35993 * 116.99954 * 179.97438 * 3 2 1 5 5 C 1.38572 * 120.07433 * 0.02562 * 4 3 2 6 6 C 1.38241 * 120.00112 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.14706 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.92501 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47329 * 84.40132 * 8 7 6 10 10 C 1.46897 * 111.00156 * 199.76882 * 9 8 7 11 11 C 1.52994 * 109.47042 * 75.75327 * 10 9 8 12 12 C 1.46898 * 110.99892 * 75.81203 * 9 8 7 13 13 C 1.50698 * 109.47372 * 189.99799 * 12 9 8 14 14 H 1.08008 * 119.99498 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00538 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99733 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00373 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47262 * 59.99624 * 17 15 13 19 19 H 1.48498 * 109.47605 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47035 * 300.00237 * 17 15 13 21 21 C 1.38247 * 120.14517 * 359.76529 * 7 6 5 22 22 C 1.38564 * 119.99628 * 0.51167 * 21 7 6 23 23 O 1.35998 * 120.07007 * 179.74339 * 22 21 7 24 24 C 1.42902 * 117.00179 * 359.72520 * 23 22 21 25 25 H 1.08997 * 109.47439 * 300.00418 * 1 2 3 26 26 H 1.09010 * 109.46960 * 60.00550 * 1 2 3 27 27 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47439 * 239.99582 * 2 1 3 29 29 H 1.09001 * 109.46386 * 119.99534 * 2 1 3 30 30 H 1.07998 * 119.99622 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.92679 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46884 * 204.40142 * 8 7 6 33 33 H 1.08997 * 109.47244 * 324.39616 * 8 7 6 34 34 H 1.08998 * 109.46883 * 195.75736 * 10 9 8 35 35 H 1.09007 * 109.46799 * 315.75131 * 10 9 8 36 36 H 1.09002 * 109.46890 * 174.85836 * 11 10 9 37 37 H 1.08998 * 109.47198 * 294.85619 * 11 10 9 38 38 H 1.08998 * 109.47617 * 54.86168 * 11 10 9 39 39 H 1.09001 * 109.47579 * 310.00177 * 12 9 8 40 40 H 1.09010 * 109.47139 * 70.00414 * 12 9 8 41 41 H 0.97000 * 120.00245 * 180.02562 * 16 15 13 42 42 H 1.08002 * 120.00033 * 180.27731 * 21 7 6 43 43 H 1.08999 * 109.47055 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.46924 * 59.99628 * 24 23 22 45 45 H 1.09001 * 109.47012 * 300.00453 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2000 0.4276 0.0005 6 6 5.5703 0.6105 0.0005 7 6 6.1004 1.8874 0.0000 8 6 7.5949 2.0810 -0.0005 9 7 8.0974 2.0095 -1.3790 10 6 9.5382 1.7242 -1.4000 11 6 9.7701 0.2460 -1.0805 12 6 7.7945 3.2446 -2.1144 13 6 8.0995 3.0462 -3.5768 14 1 8.4799 2.0972 -3.9251 15 6 7.8930 4.0760 -4.4701 16 7 7.4303 5.2316 -4.0458 17 14 8.2704 3.8297 -6.2828 18 1 7.4388 2.7206 -6.8154 19 1 7.9643 5.0783 -7.0263 20 1 9.7075 3.4942 -6.4481 21 6 5.2624 2.9870 -0.0054 22 6 3.8881 2.8106 0.0004 23 8 3.0624 3.8912 0.0003 24 6 3.6802 5.1798 0.0003 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.7885 -0.5709 0.0005 31 1 6.2282 -0.2460 0.0009 32 1 7.8351 3.0559 0.4237 33 1 8.0627 1.2992 0.5978 34 1 9.9389 1.9495 -2.3883 35 1 10.0415 2.3403 -0.6548 36 1 10.8298 0.0135 -1.1854 37 1 9.4526 0.0412 -0.0581 38 1 9.1930 -0.3697 -1.7704 39 1 6.7395 3.4902 -1.9933 40 1 8.4044 4.0592 -1.7234 41 1 7.2847 5.9560 -4.6742 42 1 5.6790 3.9834 -0.0103 43 1 2.9106 5.9517 0.0007 44 1 4.3007 5.2852 -0.8897 45 1 4.3007 5.2853 0.8902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120008303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = -51.344369 kcal Electronic energy + Delta-G solvation = -24103.749150 eV Core-core repulsion = 20701.055252 eV Total energy + Delta-G solvation = -3402.693898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26439 -38.28603 -37.59619 -35.93521 -32.64235 -32.01220 -30.81188 -29.76438 -29.35048 -27.47675 -26.41564 -24.43485 -23.66332 -22.41154 -21.51709 -20.98788 -19.73618 -18.20993 -16.78622 -16.51347 -16.11293 -16.06333 -15.20987 -14.94452 -14.49769 -14.39083 -14.31262 -14.03778 -13.76813 -13.19060 -13.10326 -12.93560 -12.54954 -12.37366 -12.06156 -11.90038 -11.81904 -11.54968 -11.43276 -11.19035 -11.02459 -10.80792 -10.74322 -10.71469 -10.67853 -10.52079 -10.37897 -10.10586 -9.74264 -9.16193 -8.42742 -8.29000 -7.40472 -7.21703 -6.01239 -4.01245 1.66680 1.82710 3.34306 3.36862 3.38394 3.41580 3.60598 4.05581 4.45190 4.89691 4.92215 5.03323 5.14893 5.20972 5.28517 5.30828 5.35116 5.45212 5.55125 5.55964 5.57788 5.72467 5.73646 5.79634 5.83439 5.89767 5.95752 5.98189 6.09314 6.11063 6.17786 6.38297 6.51421 6.61202 6.71812 6.80776 7.02460 7.07778 7.33928 7.34301 7.36431 7.82522 7.89892 8.12958 8.24139 8.57345 9.05654 9.62325 11.09786 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.004675 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.954589 B = 5987.309637 C = 6748.769084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.309 6.309 4 C 0.090 3.910 5 C -0.177 4.177 6 C -0.097 4.097 7 C -0.054 4.054 8 C 0.092 3.908 9 N -0.531 5.531 10 C 0.055 3.945 11 C -0.143 4.143 12 C 0.191 3.809 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.153 4.153 22 C 0.098 3.902 23 O -0.312 6.312 24 C 0.026 3.974 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.017 0.983 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.036 0.964 40 H -0.013 1.013 41 H 0.261 0.739 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -8.045 11.102 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.224 6.224 4 C 0.045 3.955 5 C -0.195 4.195 6 C -0.116 4.116 7 C -0.055 4.055 8 C -0.036 4.036 9 N -0.255 5.255 10 C -0.073 4.073 11 C -0.201 4.201 12 C 0.066 3.934 13 C -0.544 4.544 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.173 4.173 22 C 0.053 3.947 23 O -0.225 6.225 24 C -0.070 4.070 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.931 -8.086 10.792 15.644 hybrid contribution 0.903 0.630 -0.749 1.332 sum -7.028 -7.456 10.043 14.347 Atomic orbital electron populations 1.21747 0.93134 1.02399 1.03454 1.22702 0.95587 0.82759 1.01072 1.86130 1.18603 1.28155 1.89481 1.18106 0.82622 0.91200 1.03611 1.20932 0.94059 0.96885 1.07660 1.20617 0.93649 0.96830 1.00501 1.19521 0.95501 0.92208 0.98222 1.20981 0.90629 0.99610 0.92345 1.62141 1.13307 1.39808 1.10277 1.21981 0.89093 0.94537 1.01686 1.21798 0.99978 0.97593 1.00725 1.19784 0.96718 0.84000 0.92888 1.21127 1.42908 0.98430 0.91947 0.91972 1.24952 0.95452 0.95153 0.98915 1.69933 1.45882 1.03194 1.34872 0.86597 0.78739 0.77346 0.84952 1.20208 1.21385 1.20304 1.21030 0.90801 1.00269 1.05166 1.18166 0.88908 0.85176 1.02493 1.86095 1.34029 1.13108 1.89304 1.23062 0.99608 0.82440 1.01854 0.91702 0.91554 0.90716 0.92242 0.92457 0.85397 0.85869 0.94989 0.91140 0.89547 0.96449 0.93452 0.93880 0.92131 0.94638 0.99474 0.92969 0.84873 0.88653 0.91771 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.62 5.46 37.16 0.20 0.83 16 3 O -0.31 -5.00 9.92 -34.22 -0.34 -5.33 16 4 C 0.09 1.55 6.70 -39.12 -0.26 1.29 16 5 C -0.18 -2.72 9.04 -39.46 -0.36 -3.08 16 6 C -0.10 -1.58 9.71 -39.57 -0.38 -1.97 16 7 C -0.05 -0.97 5.04 -104.61 -0.53 -1.50 16 8 C 0.09 1.67 4.94 -4.98 -0.02 1.65 16 9 N -0.53 -11.32 4.34 -237.52 -1.03 -12.36 16 10 C 0.06 1.05 5.51 -3.83 -0.02 1.03 16 11 C -0.14 -2.20 9.96 37.15 0.37 -1.83 16 12 C 0.19 4.94 4.54 -4.98 -0.02 4.92 16 13 C -0.51 -14.21 8.23 -34.44 -0.28 -14.49 16 14 H 0.06 1.73 7.31 -52.48 -0.38 1.35 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 17 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.15 -2.84 7.38 -39.46 -0.29 -3.13 16 22 C 0.10 1.81 6.70 -39.12 -0.26 1.55 16 23 O -0.31 -5.60 10.28 -34.23 -0.35 -5.95 16 24 C 0.03 0.37 9.81 101.05 0.99 1.36 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.03 0.58 7.90 -51.92 -0.41 0.17 16 33 H 0.07 1.11 6.54 -51.93 -0.34 0.77 16 34 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 35 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.60 6.89 -51.93 -0.36 0.24 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.98 6.31 -51.93 -0.33 0.65 16 40 H -0.01 -0.35 8.12 -51.92 -0.42 -0.77 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.13 2.44 6.21 -52.49 -0.33 2.12 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 45 H 0.05 0.66 7.68 -51.93 -0.40 0.26 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -31.88 363.50 -8.46 -40.33 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.34 Total: -0.30 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.59 Total: -12.85 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.30 Total: -38.17 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.69 Total: -11.29 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.88 -8.46 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120008303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.013 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds