Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47041 * 2 1 4 4 C 1.35993 * 116.99954 * 179.97438 * 3 2 1 5 5 C 1.38572 * 120.07433 * 0.02562 * 4 3 2 6 6 C 1.38241 * 120.00112 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.14706 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.92501 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47329 * 84.40132 * 8 7 6 10 10 C 1.46897 * 111.00156 * 199.76882 * 9 8 7 11 11 C 1.52994 * 109.47042 * 75.75327 * 10 9 8 12 12 C 1.46898 * 110.99892 * 75.81203 * 9 8 7 13 13 C 1.50698 * 109.47372 * 189.99799 * 12 9 8 14 14 H 1.08008 * 119.99498 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00538 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99733 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00373 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47262 * 59.99624 * 17 15 13 19 19 H 1.48498 * 109.47605 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47035 * 300.00237 * 17 15 13 21 21 C 1.38247 * 120.14517 * 359.76529 * 7 6 5 22 22 C 1.38564 * 119.99628 * 0.51167 * 21 7 6 23 23 O 1.35998 * 120.07007 * 179.74339 * 22 21 7 24 24 C 1.42902 * 117.00179 * 359.72520 * 23 22 21 25 25 H 1.08997 * 109.47439 * 300.00418 * 1 2 3 26 26 H 1.09010 * 109.46960 * 60.00550 * 1 2 3 27 27 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47439 * 239.99582 * 2 1 3 29 29 H 1.09001 * 109.46386 * 119.99534 * 2 1 3 30 30 H 1.07998 * 119.99622 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.92679 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46884 * 204.40142 * 8 7 6 33 33 H 1.08997 * 109.47244 * 324.39616 * 8 7 6 34 34 H 1.08998 * 109.46883 * 195.75736 * 10 9 8 35 35 H 1.09007 * 109.46799 * 315.75131 * 10 9 8 36 36 H 1.09002 * 109.46890 * 174.85836 * 11 10 9 37 37 H 1.08998 * 109.47198 * 294.85619 * 11 10 9 38 38 H 1.08998 * 109.47617 * 54.86168 * 11 10 9 39 39 H 1.09001 * 109.47579 * 310.00177 * 12 9 8 40 40 H 1.09010 * 109.47139 * 70.00414 * 12 9 8 41 41 H 0.97000 * 120.00245 * 180.02562 * 16 15 13 42 42 H 1.08002 * 120.00033 * 180.27731 * 21 7 6 43 43 H 1.08999 * 109.47055 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.46924 * 59.99628 * 24 23 22 45 45 H 1.09001 * 109.47012 * 300.00453 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2000 0.4276 0.0005 6 6 5.5703 0.6105 0.0005 7 6 6.1004 1.8874 0.0000 8 6 7.5949 2.0810 -0.0005 9 7 8.0974 2.0095 -1.3790 10 6 9.5382 1.7242 -1.4000 11 6 9.7701 0.2460 -1.0805 12 6 7.7945 3.2446 -2.1144 13 6 8.0995 3.0462 -3.5768 14 1 8.4799 2.0972 -3.9251 15 6 7.8930 4.0760 -4.4701 16 7 7.4303 5.2316 -4.0458 17 14 8.2704 3.8297 -6.2828 18 1 7.4388 2.7206 -6.8154 19 1 7.9643 5.0783 -7.0263 20 1 9.7075 3.4942 -6.4481 21 6 5.2624 2.9870 -0.0054 22 6 3.8881 2.8106 0.0004 23 8 3.0624 3.8912 0.0003 24 6 3.6802 5.1798 0.0003 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.7885 -0.5709 0.0005 31 1 6.2282 -0.2460 0.0009 32 1 7.8351 3.0559 0.4237 33 1 8.0627 1.2992 0.5978 34 1 9.9389 1.9495 -2.3883 35 1 10.0415 2.3403 -0.6548 36 1 10.8298 0.0135 -1.1854 37 1 9.4526 0.0412 -0.0581 38 1 9.1930 -0.3697 -1.7704 39 1 6.7395 3.4902 -1.9933 40 1 8.4044 4.0592 -1.7234 41 1 7.2847 5.9560 -4.6742 42 1 5.6790 3.9834 -0.0103 43 1 2.9106 5.9517 0.0007 44 1 4.3007 5.2852 -0.8897 45 1 4.3007 5.2853 0.8902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120008303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = -70.795327 kcal Electronic energy + Delta-G solvation = -24104.592607 eV Core-core repulsion = 20701.055252 eV Total energy + Delta-G solvation = -3403.537355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53909 -39.50552 -39.09235 -37.38075 -34.75401 -33.05467 -32.04031 -31.08771 -30.91902 -28.98711 -27.96924 -25.96111 -24.68526 -24.23531 -22.83656 -22.23157 -21.32485 -19.43736 -18.55266 -18.08019 -17.48544 -17.18493 -16.77984 -16.41378 -16.00528 -15.94933 -15.72993 -15.46193 -15.15428 -14.48242 -14.27859 -14.16096 -14.11653 -13.87232 -13.31858 -13.14536 -13.00554 -12.94371 -12.76678 -12.69347 -12.60137 -12.50770 -12.35100 -12.12531 -11.95805 -11.88930 -11.73282 -11.61455 -11.44310 -11.16997 -10.59374 -9.62913 -8.98164 -8.70171 -8.19100 -6.27682 0.34615 0.49245 1.38969 1.42225 1.49621 2.29180 2.35606 2.39935 2.71962 3.13695 3.49095 3.82296 3.90244 4.09536 4.11011 4.13347 4.26957 4.29844 4.31793 4.36677 4.40663 4.46399 4.56597 4.59522 4.65321 4.68377 4.76577 4.80244 4.91384 4.97944 5.08567 5.15165 5.17760 5.22806 5.25235 5.34140 5.39931 5.51649 5.65445 5.72685 5.78441 6.09576 6.13476 6.41270 6.64786 6.68017 6.88409 7.41000 8.91493 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.004675 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.954589 B = 5987.309637 C = 6748.769084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.082 3.918 5 C -0.169 4.169 6 C -0.094 4.094 7 C -0.074 4.074 8 C 0.096 3.904 9 N -0.535 5.535 10 C 0.052 3.948 11 C -0.131 4.131 12 C 0.209 3.791 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.265 1.265 21 C -0.168 4.168 22 C 0.073 3.927 23 O -0.328 6.328 24 C 0.026 3.974 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.022 0.978 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.010 0.990 40 H -0.045 1.045 41 H 0.263 0.737 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.037 0.963 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 -10.762 11.285 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 O -0.245 6.245 4 C 0.037 3.963 5 C -0.187 4.187 6 C -0.113 4.113 7 C -0.075 4.075 8 C -0.031 4.031 9 N -0.259 5.259 10 C -0.076 4.076 11 C -0.188 4.188 12 C 0.083 3.917 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.187 4.187 22 C 0.028 3.972 23 O -0.242 6.242 24 C -0.069 4.069 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.040 0.960 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.028 0.972 40 H -0.027 1.027 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.056 0.944 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.997 -10.825 10.992 17.377 hybrid contribution 0.869 1.457 -0.744 1.852 sum -7.129 -9.368 10.248 15.608 Atomic orbital electron populations 1.21789 0.91527 1.04179 1.02896 1.23102 0.96946 0.80880 1.02330 1.86120 1.17898 1.31206 1.89278 1.18360 0.83651 0.91208 1.03090 1.21302 0.93526 0.97950 1.05931 1.20920 0.94495 0.96632 0.99231 1.19640 0.95277 0.93019 0.99596 1.21035 0.91117 1.00274 0.90713 1.62096 1.14934 1.36844 1.12067 1.22052 0.87581 0.97579 1.00395 1.21693 1.01509 0.93953 1.01667 1.19379 0.94441 0.85135 0.92751 1.21450 1.42835 0.98451 0.93239 0.92060 1.25846 0.95164 0.94799 1.03667 1.70069 1.46767 1.04024 1.36447 0.85530 0.79084 0.77392 0.79198 1.19677 1.20914 1.19009 1.21020 0.91350 1.00115 1.06229 1.18467 0.89013 0.86131 1.03638 1.86056 1.34738 1.13938 1.89478 1.23190 1.00455 0.82074 1.01173 0.91878 0.92524 0.87709 0.91489 0.90480 0.81841 0.83345 0.95982 0.87890 0.92353 0.95934 0.91151 0.91788 0.92788 0.97172 1.02691 0.92876 0.86286 0.85707 0.94379 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.04 0.86 5.46 71.98 0.39 1.26 16 3 O -0.33 -10.40 9.92 -79.61 -0.79 -11.19 16 4 C 0.08 2.81 6.70 22.57 0.15 2.96 16 5 C -0.17 -4.84 9.04 22.35 0.20 -4.64 16 6 C -0.09 -2.88 9.71 22.28 0.22 -2.66 16 7 C -0.07 -2.69 5.04 -19.86 -0.10 -2.79 16 8 C 0.10 3.45 4.94 85.56 0.42 3.87 16 9 N -0.53 -22.97 4.34 -905.38 -3.93 -26.91 16 10 C 0.05 1.95 5.51 86.30 0.48 2.43 16 11 C -0.13 -3.65 9.96 71.98 0.72 -2.94 16 12 C 0.21 11.29 4.54 85.56 0.39 11.68 16 13 C -0.52 -30.03 8.23 25.60 0.21 -29.82 16 14 H 0.06 3.46 7.31 -2.91 -0.02 3.44 16 15 C 0.00 0.18 5.46 84.65 0.46 0.65 16 16 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 17 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C -0.17 -6.51 7.38 22.35 0.16 -6.34 16 22 C 0.07 2.77 6.70 22.57 0.15 2.92 16 23 O -0.33 -12.26 10.28 -79.66 -0.82 -13.08 16 24 C 0.03 0.79 9.81 113.37 1.11 1.90 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 29 H 0.08 1.29 7.66 -2.39 -0.02 1.27 16 30 H 0.16 3.41 6.30 -2.91 -0.02 3.39 16 31 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.02 0.83 7.90 -2.38 -0.02 0.81 16 33 H 0.10 2.99 6.54 -2.39 -0.02 2.97 16 34 H 0.06 2.51 6.58 -2.39 -0.02 2.49 16 35 H 0.02 0.81 8.00 -2.38 -0.02 0.79 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.53 6.89 -2.39 -0.02 1.51 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.01 0.60 6.31 -2.39 -0.02 0.58 16 40 H -0.04 -2.62 8.12 -2.38 -0.02 -2.64 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.12 4.78 6.21 -2.91 -0.02 4.76 16 43 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.04 1.35 7.65 -2.39 -0.02 1.33 16 45 H 0.06 1.74 7.68 -2.39 -0.02 1.72 16 Total: -1.00 -71.31 363.50 3.44 -67.87 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.96 Total: 15.84 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 5.71 Total: -23.14 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.65 Total: -83.43 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.61 Total: -24.27 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.31 3.44 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120008303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.926 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds