Wall clock time and date at job start Tue Mar 31 2020 07:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47437 * 329.12481 * 3 2 1 5 5 N 1.46900 * 109.47050 * 179.03532 * 4 3 2 6 6 C 1.46900 * 111.00299 * 297.48196 * 5 4 3 7 7 C 1.50703 * 109.46836 * 292.38318 * 6 5 4 8 8 H 1.07998 * 120.00210 * 354.96416 * 7 6 5 9 9 C 1.37873 * 119.99996 * 174.95407 * 7 6 5 10 10 N 1.31515 * 120.00074 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00199 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47066 * 60.00545 * 11 9 7 13 13 H 1.48504 * 109.47245 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47381 * 300.00562 * 11 9 7 15 15 C 1.46899 * 110.99995 * 61.43519 * 5 4 3 16 16 C 1.50700 * 109.47048 * 66.04404 * 15 5 4 17 17 O 1.21284 * 120.00125 * 0.02562 * 16 15 5 18 18 N 1.34777 * 120.00343 * 179.97438 * 16 15 5 19 19 C 1.44583 * 118.63629 * 359.73494 * 18 16 15 20 20 C 1.54310 * 109.90918 * 270.85009 * 19 18 16 21 21 C 1.47094 * 110.29462 * 288.76054 * 20 19 18 22 22 C 1.52569 * 114.32622 * 62.73600 * 21 20 19 23 23 C 1.50878 * 109.35167 * 274.97846 * 22 21 20 24 24 C 1.47602 * 118.64849 * 180.02562 * 18 16 15 25 25 H 1.09000 * 109.46978 * 209.12855 * 3 2 1 26 26 H 1.08995 * 109.46904 * 89.12985 * 3 2 1 27 27 H 1.09004 * 109.47015 * 59.03771 * 4 3 2 28 28 H 1.09005 * 109.47182 * 299.03428 * 4 3 2 29 29 H 1.09002 * 109.46963 * 52.38075 * 6 5 4 30 30 H 1.08990 * 109.47208 * 172.38688 * 6 5 4 31 31 H 0.96999 * 120.00559 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.47365 * 186.04041 * 15 5 4 33 33 H 1.09000 * 109.47463 * 306.04738 * 15 5 4 34 34 H 1.08999 * 109.45323 * 30.76523 * 19 18 16 35 35 H 1.09004 * 109.44525 * 150.68271 * 19 18 16 36 36 H 1.09005 * 109.39977 * 168.47328 * 20 19 18 37 37 H 1.08995 * 109.28259 * 48.97964 * 20 19 18 38 38 H 1.08990 * 108.51927 * 301.47756 * 21 20 19 39 39 H 1.09008 * 108.50854 * 183.98403 * 21 20 19 40 40 H 1.08999 * 109.49205 * 155.01319 * 22 21 20 41 41 H 1.08999 * 109.49359 * 34.93931 * 22 21 20 42 42 H 1.09002 * 109.36735 * 331.69025 * 23 22 21 43 43 H 1.09001 * 109.36415 * 212.08154 * 23 22 21 44 44 H 1.08995 * 108.94623 * 258.55516 * 24 18 16 45 45 H 1.08999 * 108.94451 * 17.27123 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2372 0.7402 5 7 4.5874 -1.2484 0.7202 6 6 5.0945 -1.3413 -0.6554 7 6 4.7512 -2.6927 -1.2271 8 1 4.2831 -3.4398 -0.6034 9 6 5.0346 -2.9752 -2.5465 10 7 5.6049 -2.0655 -3.3060 11 14 4.6097 -4.6505 -3.2551 12 1 3.1462 -4.8774 -3.1460 13 1 5.0138 -4.7010 -4.6832 14 1 5.3318 -5.7053 -2.4992 15 6 5.1323 -0.0677 1.4035 16 6 4.7932 -0.1352 2.8703 17 8 4.1603 -1.0746 3.3039 18 7 5.1940 0.8479 3.7006 19 6 5.9528 1.9504 3.1537 20 6 7.4600 1.6219 3.1932 21 6 7.9524 1.6512 4.5790 22 6 7.3134 0.6119 5.4951 23 6 6.0179 1.1574 6.0430 24 6 4.8459 0.7513 5.1318 25 1 2.9709 0.8985 0.5002 26 1 2.9713 -0.0148 -1.0275 27 1 2.7416 -2.1349 0.2501 28 1 2.7695 -1.2129 1.7726 29 1 4.6367 -0.5620 -1.2647 30 1 6.1767 -1.2120 -0.6531 31 1 5.8046 -2.2643 -4.2341 32 1 6.2152 -0.0449 1.2817 33 1 4.6990 0.8344 0.9716 34 1 5.6504 2.1221 2.1207 35 1 5.7625 2.8487 3.7412 36 1 8.0062 2.3559 2.6007 37 1 7.6231 0.6294 2.7732 38 1 7.7621 2.6412 4.9931 39 1 9.0298 1.4862 4.5669 40 1 7.9910 0.3876 6.3189 41 1 7.1144 -0.2983 4.9294 42 1 6.0764 2.2446 6.0942 43 1 5.8525 0.7588 7.0440 44 1 3.9975 1.4047 5.3345 45 1 4.5627 -0.2766 5.3585 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121925002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:15 Heat of formation + Delta-G solvation = -5.029435 kcal Electronic energy + Delta-G solvation = -24483.810953 eV Core-core repulsion = 21115.418172 eV Total energy + Delta-G solvation = -3368.392781 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37719 -38.10070 -36.89990 -35.75769 -33.88135 -32.95479 -32.59265 -30.51202 -28.46697 -26.88967 -25.83308 -25.11323 -23.58645 -21.89283 -20.62770 -20.04515 -18.60609 -17.58845 -16.94429 -16.43388 -16.04598 -15.85525 -15.06661 -14.77305 -14.60490 -14.44984 -14.17267 -13.89290 -13.58840 -13.36909 -13.28909 -13.11120 -12.60374 -12.32795 -12.25858 -12.04039 -11.87013 -11.70018 -11.51662 -11.29245 -11.14088 -10.99248 -10.83229 -10.81496 -10.78974 -10.63251 -10.57654 -10.16489 -9.99008 -9.48880 -9.11471 -8.55807 -8.47302 -7.35938 -6.07955 -4.08710 2.89024 3.05562 3.13096 3.15690 3.34250 3.37849 3.42240 4.32892 4.41818 4.44410 4.64301 4.70756 4.82018 4.86817 4.95676 4.99343 5.19634 5.28567 5.32405 5.38725 5.44710 5.50297 5.56313 5.58773 5.67701 5.76265 5.79488 5.82198 5.93898 5.95548 5.96325 5.99773 6.10705 6.23763 6.34079 6.64301 6.77337 7.10224 7.19227 7.46178 7.74719 7.87873 7.98646 8.06240 8.40312 8.50386 8.99679 9.56438 11.02374 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.004409 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.870659 B = 6348.575337 C = 7362.614121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.226 3.774 3 C -0.075 4.075 4 C 0.067 3.933 5 N -0.510 5.510 6 C 0.187 3.813 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.059 3.941 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.030 3.970 16 C 0.511 3.489 17 O -0.518 6.518 18 N -0.613 5.613 19 C 0.111 3.889 20 C -0.143 4.143 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.129 4.129 24 C 0.112 3.888 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.006 0.994 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 11.881 15.011 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.063 4.063 5 N -0.233 5.233 6 C 0.063 3.937 7 C -0.546 4.546 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.101 4.101 16 C 0.299 3.701 17 O -0.392 6.392 18 N -0.349 5.349 19 C -0.013 4.013 20 C -0.181 4.181 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.167 4.167 24 C -0.010 4.010 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.430 10.977 15.317 19.154 hybrid contribution 0.240 0.025 -0.988 1.017 sum 3.669 11.003 14.329 18.435 Atomic orbital electron populations 1.81126 1.13166 1.09634 1.09985 1.29206 0.95225 0.92426 0.92260 1.20262 0.81793 1.03275 1.06366 1.22229 0.88459 0.95530 1.00114 1.62121 1.05680 1.34813 1.20656 1.19902 0.95562 0.97486 0.80792 1.21089 1.39810 0.98703 0.95023 0.91655 1.24932 0.95253 0.97146 0.96959 1.69921 1.42625 1.33885 1.07399 0.86590 0.78933 0.84347 0.77779 1.20228 1.21420 1.20124 1.22135 1.02193 0.94976 0.90781 1.21038 0.78782 0.81267 0.89000 1.90643 1.38710 1.32444 1.77429 1.47763 1.55826 1.23307 1.07996 1.21462 0.90881 0.89333 0.99667 1.21245 0.96222 1.03202 0.97470 1.20426 1.00147 0.99101 0.95583 1.21072 0.96142 0.99409 0.98965 1.21752 0.95103 1.01064 0.98823 1.21733 0.96223 1.03331 0.79698 0.88891 0.86075 0.89008 0.89902 0.97648 0.95199 0.92832 0.88160 0.92495 0.90079 0.90737 0.90679 0.91132 0.92499 0.92514 0.92138 0.91260 0.91806 0.90976 0.92451 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.79 18.54 42.15 0.78 -8.00 16 2 C 0.23 3.87 15.43 -20.76 -0.32 3.55 16 3 C -0.08 -1.17 5.05 -29.52 -0.15 -1.32 16 4 C 0.07 1.22 4.78 -3.82 -0.02 1.20 16 5 N -0.51 -9.89 4.43 -237.52 -1.05 -10.94 16 6 C 0.19 4.26 4.54 -4.97 -0.02 4.23 16 7 C -0.51 -13.27 8.40 -34.44 -0.29 -13.56 16 8 H 0.07 1.74 7.41 -52.49 -0.39 1.36 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -24.95 13.29 55.43 0.74 -24.22 16 11 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.03 0.46 3.72 -4.98 -0.02 0.44 16 16 C 0.51 7.65 7.34 -10.98 -0.08 7.57 16 17 O -0.52 -9.71 13.59 5.55 0.08 -9.63 16 18 N -0.61 -6.94 2.25 -172.91 -0.39 -7.33 16 19 C 0.11 0.94 5.13 -4.38 -0.02 0.92 16 20 C -0.14 -1.18 5.61 -28.88 -0.16 -1.34 16 21 C -0.12 -0.89 5.15 -29.79 -0.15 -1.04 16 22 C -0.12 -1.03 5.51 -28.02 -0.15 -1.18 16 23 C -0.13 -1.02 5.71 -27.32 -0.16 -1.18 16 24 C 0.11 1.15 6.10 -2.96 -0.02 1.14 16 25 H 0.09 1.19 6.36 -51.93 -0.33 0.86 16 26 H 0.12 2.03 6.26 -51.93 -0.32 1.71 16 27 H 0.09 1.88 7.01 -51.93 -0.36 1.51 16 28 H 0.08 1.54 5.86 -51.93 -0.30 1.23 16 29 H 0.01 0.13 6.00 -51.93 -0.31 -0.18 16 30 H 0.03 0.72 7.90 -51.93 -0.41 0.31 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.10 1.44 6.85 -51.93 -0.36 1.08 16 33 H 0.06 0.73 5.24 -51.93 -0.27 0.46 16 34 H 0.08 0.65 6.25 -51.93 -0.32 0.33 16 35 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.72 7.28 -51.93 -0.38 0.34 16 38 H 0.06 0.38 7.36 -51.93 -0.38 0.00 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.78 7.48 -51.93 -0.39 0.39 16 42 H 0.06 0.44 7.32 -51.93 -0.38 0.06 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 1.10 6.95 -51.93 -0.36 0.74 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -30.87 349.46 -8.21 -39.08 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.94 Total: -1.22 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.66 Total: 0.91 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.08 Total: -50.49 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.87 -8.21 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121925002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.052 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds