Wall clock time and date at job start Tue Mar 31 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47437 * 329.12481 * 3 2 1 5 5 N 1.46900 * 109.47050 * 179.03532 * 4 3 2 6 6 C 1.46900 * 111.00299 * 297.48196 * 5 4 3 7 7 C 1.50703 * 109.46836 * 292.38318 * 6 5 4 8 8 H 1.07998 * 120.00210 * 354.96416 * 7 6 5 9 9 C 1.37873 * 119.99996 * 174.95407 * 7 6 5 10 10 N 1.31515 * 120.00074 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00199 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47066 * 60.00545 * 11 9 7 13 13 H 1.48504 * 109.47245 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47381 * 300.00562 * 11 9 7 15 15 C 1.46899 * 110.99995 * 61.43519 * 5 4 3 16 16 C 1.50700 * 109.47048 * 66.04404 * 15 5 4 17 17 O 1.21284 * 120.00125 * 0.02562 * 16 15 5 18 18 N 1.34777 * 120.00343 * 179.97438 * 16 15 5 19 19 C 1.44583 * 118.63629 * 359.73494 * 18 16 15 20 20 C 1.54310 * 109.90918 * 270.85009 * 19 18 16 21 21 C 1.47094 * 110.29462 * 288.76054 * 20 19 18 22 22 C 1.52569 * 114.32622 * 62.73600 * 21 20 19 23 23 C 1.50878 * 109.35167 * 274.97846 * 22 21 20 24 24 C 1.47602 * 118.64849 * 180.02562 * 18 16 15 25 25 H 1.09000 * 109.46978 * 209.12855 * 3 2 1 26 26 H 1.08995 * 109.46904 * 89.12985 * 3 2 1 27 27 H 1.09004 * 109.47015 * 59.03771 * 4 3 2 28 28 H 1.09005 * 109.47182 * 299.03428 * 4 3 2 29 29 H 1.09002 * 109.46963 * 52.38075 * 6 5 4 30 30 H 1.08990 * 109.47208 * 172.38688 * 6 5 4 31 31 H 0.96999 * 120.00559 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.47365 * 186.04041 * 15 5 4 33 33 H 1.09000 * 109.47463 * 306.04738 * 15 5 4 34 34 H 1.08999 * 109.45323 * 30.76523 * 19 18 16 35 35 H 1.09004 * 109.44525 * 150.68271 * 19 18 16 36 36 H 1.09005 * 109.39977 * 168.47328 * 20 19 18 37 37 H 1.08995 * 109.28259 * 48.97964 * 20 19 18 38 38 H 1.08990 * 108.51927 * 301.47756 * 21 20 19 39 39 H 1.09008 * 108.50854 * 183.98403 * 21 20 19 40 40 H 1.08999 * 109.49205 * 155.01319 * 22 21 20 41 41 H 1.08999 * 109.49359 * 34.93931 * 22 21 20 42 42 H 1.09002 * 109.36735 * 331.69025 * 23 22 21 43 43 H 1.09001 * 109.36415 * 212.08154 * 23 22 21 44 44 H 1.08995 * 108.94623 * 258.55516 * 24 18 16 45 45 H 1.08999 * 108.94451 * 17.27123 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2372 0.7402 5 7 4.5874 -1.2484 0.7202 6 6 5.0945 -1.3413 -0.6554 7 6 4.7512 -2.6927 -1.2271 8 1 4.2831 -3.4398 -0.6034 9 6 5.0346 -2.9752 -2.5465 10 7 5.6049 -2.0655 -3.3060 11 14 4.6097 -4.6505 -3.2551 12 1 3.1462 -4.8774 -3.1460 13 1 5.0138 -4.7010 -4.6832 14 1 5.3318 -5.7053 -2.4992 15 6 5.1323 -0.0677 1.4035 16 6 4.7932 -0.1352 2.8703 17 8 4.1603 -1.0746 3.3039 18 7 5.1940 0.8479 3.7006 19 6 5.9528 1.9504 3.1537 20 6 7.4600 1.6219 3.1932 21 6 7.9524 1.6512 4.5790 22 6 7.3134 0.6119 5.4951 23 6 6.0179 1.1574 6.0430 24 6 4.8459 0.7513 5.1318 25 1 2.9709 0.8985 0.5002 26 1 2.9713 -0.0148 -1.0275 27 1 2.7416 -2.1349 0.2501 28 1 2.7695 -1.2129 1.7726 29 1 4.6367 -0.5620 -1.2647 30 1 6.1767 -1.2120 -0.6531 31 1 5.8046 -2.2643 -4.2341 32 1 6.2152 -0.0449 1.2817 33 1 4.6990 0.8344 0.9716 34 1 5.6504 2.1221 2.1207 35 1 5.7625 2.8487 3.7412 36 1 8.0062 2.3559 2.6007 37 1 7.6231 0.6294 2.7732 38 1 7.7621 2.6412 4.9931 39 1 9.0298 1.4862 4.5669 40 1 7.9910 0.3876 6.3189 41 1 7.1144 -0.2983 4.9294 42 1 6.0764 2.2446 6.0942 43 1 5.8525 0.7588 7.0440 44 1 3.9975 1.4047 5.3345 45 1 4.5627 -0.2766 5.3585 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121925002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:14 Heat of formation + Delta-G solvation = -23.684469 kcal Electronic energy + Delta-G solvation = -24484.619896 eV Core-core repulsion = 21115.418172 eV Total energy + Delta-G solvation = -3369.201724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42305 -39.27141 -38.12749 -37.23160 -34.78028 -34.64531 -33.61516 -31.91616 -30.00458 -27.99486 -26.99674 -26.03181 -25.29346 -22.95740 -21.56610 -21.19205 -19.62238 -18.98450 -18.19460 -18.02479 -17.17677 -17.01053 -16.46250 -16.17587 -15.90400 -15.36946 -15.28794 -15.05837 -14.87623 -14.65665 -14.26629 -14.11285 -14.05010 -13.57567 -13.42371 -13.33300 -13.07395 -12.94857 -12.92159 -12.67652 -12.60184 -12.44603 -12.39583 -11.96018 -11.76451 -11.57182 -11.47502 -11.44995 -11.33146 -11.21852 -10.52527 -10.47599 -9.49291 -8.87835 -8.12936 -6.18491 1.45421 1.45810 1.53328 1.71850 1.73947 1.76457 2.09117 2.46318 2.97080 3.21145 3.46418 3.67177 3.93680 4.00580 4.06631 4.10491 4.16722 4.19377 4.26654 4.40401 4.49687 4.50091 4.63331 4.70406 4.78974 4.80749 4.87095 4.93205 5.04548 5.10303 5.20990 5.30005 5.33629 5.34010 5.37195 5.42501 5.45510 5.56489 5.74488 5.80987 6.12869 6.32764 6.45025 6.55776 6.71109 6.96099 7.37373 7.49957 8.96042 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.004409 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.870659 B = 6348.575337 C = 7362.614121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.244 3.756 3 C -0.060 4.060 4 C 0.075 3.925 5 N -0.529 5.529 6 C 0.202 3.798 7 C -0.519 4.519 8 H 0.051 0.949 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.947 3.053 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.275 1.275 15 C 0.032 3.968 16 C 0.510 3.490 17 O -0.565 6.565 18 N -0.602 5.602 19 C 0.102 3.898 20 C -0.140 4.140 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.120 4.120 24 C 0.109 3.891 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.005 0.995 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 14.076 15.882 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.073 4.073 3 C -0.102 4.102 4 C -0.055 4.055 5 N -0.251 5.251 6 C 0.077 3.923 7 C -0.558 4.558 8 H 0.070 0.930 9 C -0.183 4.183 10 N -0.564 5.564 11 Si 0.774 3.226 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.200 1.200 15 C -0.099 4.099 16 C 0.298 3.702 17 O -0.444 6.444 18 N -0.335 5.335 19 C -0.021 4.021 20 C -0.179 4.179 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.013 4.013 25 H 0.148 0.852 26 H 0.132 0.868 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.062 13.212 16.212 21.305 hybrid contribution 0.106 -0.634 -1.163 1.329 sum 4.169 12.579 15.049 20.052 Atomic orbital electron populations 1.81142 1.14171 1.10765 1.11083 1.29356 0.95285 0.91392 0.91241 1.20178 0.80695 1.03449 1.05885 1.22010 0.87971 0.95578 0.99969 1.61895 1.06318 1.38000 1.18924 1.19559 0.94450 0.95756 0.82528 1.21385 1.39225 1.00032 0.95160 0.93049 1.25552 0.95376 0.99924 0.97412 1.69992 1.43599 1.35220 1.07588 0.85774 0.78552 0.81024 0.77277 1.20174 1.20827 1.20046 1.22187 1.02570 0.94331 0.90792 1.20986 0.78539 0.81447 0.89197 1.90629 1.41211 1.34467 1.78076 1.47789 1.54744 1.22855 1.08125 1.21769 0.90579 0.89056 1.00653 1.21234 0.96296 1.02331 0.98035 1.20432 1.00079 0.99649 0.95070 1.21078 0.97007 0.98451 0.99160 1.21719 0.93331 1.02343 0.98438 1.21846 0.97947 1.02112 0.79376 0.85200 0.86758 0.91971 0.90013 0.97699 0.96820 0.92793 0.87515 0.89419 0.89157 0.88005 0.88722 0.93695 0.90449 0.92410 0.91317 0.94563 0.89574 0.90017 0.91023 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.49 18.54 20.01 0.37 -18.12 16 2 C 0.24 8.12 15.43 89.44 1.38 9.50 16 3 C -0.06 -1.80 5.05 28.79 0.15 -1.66 16 4 C 0.07 2.75 4.78 86.30 0.41 3.16 16 5 N -0.53 -20.56 4.43 -905.37 -4.01 -24.57 16 6 C 0.20 9.27 4.54 85.56 0.39 9.66 16 7 C -0.52 -27.58 8.40 25.60 0.21 -27.37 16 8 H 0.05 2.82 7.41 -2.91 -0.02 2.80 16 9 C 0.02 0.88 5.46 84.65 0.46 1.34 16 10 N -0.92 -51.34 13.29 21.45 0.28 -51.06 16 11 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 15 C 0.03 0.92 3.72 85.56 0.32 1.24 16 16 C 0.51 14.96 7.34 87.66 0.64 15.60 16 17 O -0.57 -21.61 13.59 -3.04 -0.04 -21.65 16 18 N -0.60 -12.58 2.25 -819.37 -1.85 -14.43 16 19 C 0.10 1.41 5.13 87.18 0.45 1.86 16 20 C -0.14 -1.97 5.61 29.20 0.16 -1.81 16 21 C -0.11 -1.47 5.15 28.61 0.15 -1.32 16 22 C -0.12 -1.88 5.51 29.76 0.16 -1.72 16 23 C -0.12 -1.60 5.71 30.21 0.17 -1.43 16 24 C 0.11 2.08 6.10 86.48 0.53 2.61 16 25 H 0.13 2.92 6.36 -2.39 -0.02 2.91 16 26 H 0.11 3.70 6.26 -2.39 -0.01 3.69 16 27 H 0.06 2.62 7.01 -2.38 -0.02 2.61 16 28 H 0.08 3.06 5.86 -2.38 -0.01 3.05 16 29 H 0.01 0.25 6.00 -2.39 -0.01 0.23 16 30 H 0.01 0.67 7.90 -2.39 -0.02 0.65 16 31 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.11 2.96 6.85 -2.39 -0.02 2.94 16 33 H 0.09 1.99 5.24 -2.39 -0.01 1.97 16 34 H 0.09 1.11 6.25 -2.39 -0.01 1.10 16 35 H 0.10 0.93 8.06 -2.39 -0.02 0.91 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.04 0.87 7.28 -2.39 -0.02 0.85 16 38 H 0.08 0.71 7.36 -2.39 -0.02 0.69 16 39 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 0.81 7.48 -2.39 -0.02 0.79 16 42 H 0.09 0.81 7.32 -2.39 -0.02 0.79 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.52 6.95 -2.39 -0.02 1.50 16 Total: -1.00 -68.12 349.46 3.36 -64.75 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.99 Total: 9.84 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.59 Total: 9.68 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -5.20 Total: -108.17 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.04 Total: -21.65 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -68.12 3.36 -64.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121925002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.070 kcal (2) G-P(sol) polarization free energy of solvation -68.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds