Wall clock time and date at job start Tue Mar 31 2020 07:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47010 * 90.02411 * 5 4 3 7 7 C 1.52999 * 109.46863 * 174.99865 * 6 5 4 8 8 C 1.52996 * 109.47204 * 295.00126 * 6 5 4 9 9 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 10 10 C 1.50700 * 126.12519 * 180.23853 * 9 4 3 11 11 C 1.35306 * 107.74429 * 0.39166 * 9 4 3 12 12 C 1.50706 * 126.04096 * 179.87280 * 11 9 4 13 13 C 1.52999 * 109.47090 * 269.71662 * 12 11 9 14 14 C 1.50696 * 109.47088 * 180.02562 * 13 12 11 15 15 O 1.21295 * 120.00246 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99853 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99646 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00245 * 359.97438 * 17 16 14 19 19 C 1.38957 * 119.99845 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99772 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47473 * 59.99226 * 21 19 17 23 23 H 1.48500 * 109.46735 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47071 * 299.99189 * 21 19 17 25 25 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 26 26 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 27 27 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 28 28 H 1.09000 * 109.47667 * 210.02168 * 5 4 3 29 29 H 1.09004 * 109.47353 * 330.02766 * 5 4 3 30 30 H 1.08997 * 109.46996 * 55.00490 * 6 5 4 31 31 H 1.09005 * 109.47079 * 60.00702 * 7 6 5 32 32 H 1.08998 * 109.46701 * 179.97438 * 7 6 5 33 33 H 1.08992 * 109.47469 * 300.00095 * 7 6 5 34 34 H 1.09002 * 109.47097 * 300.00409 * 8 6 5 35 35 H 1.09002 * 109.46998 * 59.99581 * 8 6 5 36 36 H 1.08998 * 109.47454 * 179.97438 * 8 6 5 37 37 H 1.09003 * 109.46893 * 270.17807 * 10 9 4 38 38 H 1.08998 * 109.47339 * 30.17681 * 10 9 4 39 39 H 1.09001 * 109.47172 * 150.18283 * 10 9 4 40 40 H 1.08994 * 109.46790 * 29.71060 * 12 11 9 41 41 H 1.08997 * 109.47305 * 149.71501 * 12 11 9 42 42 H 1.09011 * 109.46854 * 299.99717 * 13 12 11 43 43 H 1.09005 * 109.47366 * 59.99142 * 13 12 11 44 44 H 0.96993 * 120.00067 * 0.02562 * 16 14 13 45 45 H 0.96999 * 119.99599 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.2018 1.8009 1.4424 7 6 6.5056 2.6015 1.4444 8 6 4.1024 2.6148 2.1278 9 6 3.6142 -0.7154 0.0045 10 6 4.8350 -1.5989 0.0109 11 6 2.3272 -1.1330 -0.0006 12 6 1.8598 -2.5658 -0.0004 13 6 1.7014 -3.0508 -1.4428 14 6 1.2335 -4.4833 -1.4426 15 8 1.0457 -5.0598 -0.3921 16 7 1.0237 -5.1238 -2.6097 17 6 0.5986 -6.4272 -2.6095 18 1 0.4321 -6.9408 -1.6741 19 6 0.3828 -7.0878 -3.8128 20 7 0.5857 -6.4631 -4.9509 21 14 -0.1972 -8.8635 -3.8125 22 1 -1.5033 -8.9576 -3.1122 23 1 -0.3516 -9.3340 -5.2125 24 1 0.8018 -9.7104 -3.1125 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 5.6091 0.9987 -0.5149 29 1 4.5561 2.4338 -0.5130 30 1 5.3497 0.8645 1.9804 31 1 6.3577 3.5380 0.9065 32 1 6.7987 2.8158 2.4722 33 1 7.2887 2.0218 0.9562 34 1 3.9545 3.5512 1.5898 35 1 3.1735 2.0444 2.1263 36 1 4.3956 2.8283 3.1557 37 1 5.1337 -1.8132 -1.0153 38 1 5.6489 -1.0904 0.5276 39 1 4.6053 -2.5323 0.5248 40 1 2.5934 -3.1871 0.5132 41 1 0.9012 -2.6352 0.5136 42 1 0.9677 -2.4294 -1.9565 43 1 2.6601 -2.9812 -1.9569 44 1 1.1742 -4.6630 -3.4498 45 1 0.4347 -6.9241 -5.7908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126835282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:04 Heat of formation + Delta-G solvation = 2.239422 kcal Electronic energy + Delta-G solvation = -23429.595209 eV Core-core repulsion = 20061.517630 eV Total energy + Delta-G solvation = -3368.077579 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34089 -38.14275 -36.83927 -34.13714 -33.40982 -33.20751 -31.18005 -30.23233 -29.01479 -27.47394 -27.06367 -25.58839 -24.70937 -22.80718 -20.72070 -19.49383 -19.20764 -18.87767 -17.75162 -16.55224 -15.82748 -15.50222 -15.31595 -14.67668 -14.48965 -14.08369 -13.84955 -13.72838 -13.45512 -13.30382 -13.22258 -12.77174 -12.62840 -12.43667 -12.37161 -12.26230 -12.08671 -11.96184 -11.70719 -11.49288 -11.35583 -11.30815 -11.19047 -11.03793 -11.00211 -10.53621 -10.40758 -10.16535 -10.09235 -9.45305 -8.89089 -8.39429 -7.96704 -7.91185 -6.36636 -3.77279 1.95728 2.53184 2.89923 3.23095 3.28302 3.33009 4.00178 4.22240 4.29901 4.41853 4.59211 4.74166 4.79619 4.99579 5.08035 5.12701 5.17827 5.26846 5.30585 5.34784 5.42634 5.48936 5.50876 5.57488 5.63056 5.71307 5.74449 5.79164 5.82057 5.88031 5.93117 6.03201 6.05719 6.11902 6.24001 6.30329 6.57407 6.69044 6.75090 6.93466 7.18605 7.59561 7.90443 8.11647 8.67190 9.22970 9.61823 10.13534 10.81124 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.002834 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.964112 B = 9876.046908 C =10221.737810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.079 3.921 3 N -0.300 5.300 4 N -0.372 5.372 5 C 0.139 3.861 6 C -0.114 4.114 7 C -0.145 4.145 8 C -0.144 4.144 9 C 0.082 3.918 10 C -0.093 4.093 11 C -0.223 4.223 12 C -0.018 4.018 13 C -0.122 4.122 14 C 0.441 3.559 15 O -0.598 6.598 16 N -0.565 5.565 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.393 0.607 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 17.830 8.683 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 N -0.122 5.122 4 N -0.155 5.155 5 C 0.017 3.983 6 C -0.133 4.133 7 C -0.203 4.203 8 C -0.202 4.202 9 C -0.044 4.044 10 C -0.151 4.151 11 C -0.234 4.234 12 C -0.057 4.057 13 C -0.163 4.163 14 C 0.227 3.773 15 O -0.484 6.484 16 N -0.201 5.201 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.004 18.739 9.159 23.133 hybrid contribution -0.104 -1.385 -0.721 1.565 sum 9.900 17.353 8.438 21.687 Atomic orbital electron populations 1.20190 0.86929 1.03346 1.02805 1.22207 0.96735 0.90385 0.99339 1.77233 0.86224 1.22490 1.26214 1.48302 1.05045 1.03763 1.58348 1.21723 0.84124 0.94826 0.97578 1.21547 0.96155 1.00105 0.95506 1.21780 0.96013 1.00047 1.02427 1.21794 0.98691 0.99983 0.99692 1.20806 0.96942 0.84404 1.02245 1.20471 0.92752 0.98551 1.03370 1.19901 0.91003 0.96728 1.15790 1.19530 1.01894 0.88443 0.95804 1.21456 1.01741 0.95059 0.98023 1.20065 0.84299 0.88337 0.84568 1.90503 1.57624 1.68860 1.31414 1.41932 1.58681 1.12607 1.06845 1.19671 1.41182 0.87802 0.94302 0.88036 1.25259 0.97746 1.00283 0.94713 1.69611 1.49373 1.37921 0.97522 0.85938 0.79370 0.82028 0.76992 1.19920 1.21026 1.19946 0.90750 0.91259 0.90024 0.89270 0.89025 0.90706 0.92292 0.92021 0.92355 0.92599 0.91806 0.92904 0.90227 0.91638 0.89271 0.91157 0.90831 0.90753 0.90960 0.77427 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.12 36.01 0.36 -0.55 16 2 C 0.08 1.17 7.22 -82.40 -0.59 0.58 16 3 N -0.30 -4.41 11.64 33.67 0.39 -4.02 16 4 N -0.37 -4.73 3.21 -57.14 -0.18 -4.91 16 5 C 0.14 1.25 5.45 -4.04 -0.02 1.23 16 6 C -0.11 -0.90 3.13 -90.62 -0.28 -1.19 16 7 C -0.14 -0.83 9.19 37.16 0.34 -0.49 16 8 C -0.14 -1.32 9.05 37.16 0.34 -0.98 16 9 C 0.08 1.09 6.93 -82.27 -0.57 0.52 16 10 C -0.09 -0.97 9.68 36.01 0.35 -0.62 16 11 C -0.22 -3.36 5.35 -105.05 -0.56 -3.92 16 12 C -0.02 -0.30 4.45 -27.88 -0.12 -0.42 16 13 C -0.12 -2.22 5.68 -27.89 -0.16 -2.38 16 14 C 0.44 10.52 7.78 -10.98 -0.09 10.44 16 15 O -0.60 -16.25 15.56 5.54 0.09 -16.16 16 16 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 17 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 20 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 21 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 28 H 0.09 0.64 7.68 -51.93 -0.40 0.24 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.75 6.95 -51.93 -0.36 0.39 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.53 7.74 -51.93 -0.40 0.13 16 39 H 0.09 0.96 7.14 -51.93 -0.37 0.59 16 40 H 0.07 1.20 7.10 -51.93 -0.37 0.83 16 41 H 0.07 1.28 7.88 -51.93 -0.41 0.88 16 42 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -32.66 372.30 -7.33 -39.99 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.63 Total: 8.03 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.25 Total: -5.91 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.87 Total: -47.79 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.66 -7.33 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126835282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.226 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds