Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99520 * 2 1 4 4 C 1.53001 * 109.46820 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47271 * 64.99595 * 4 3 2 6 6 C 1.46903 * 110.99705 * 66.04462 * 5 4 3 7 7 C 1.46896 * 111.00284 * 189.99801 * 5 4 3 8 8 C 1.50697 * 109.47382 * 170.00109 * 7 5 4 9 9 C 1.38284 * 119.97210 * 269.97968 * 8 7 5 10 10 C 1.38250 * 120.10839 * 180.02562 * 9 8 7 11 11 C 1.38161 * 120.05581 * 359.68103 * 10 9 8 12 12 C 1.38710 * 119.94432 * 0.61525 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.67631 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 5 25 25 H 1.08999 * 109.47719 * 299.99924 * 1 2 3 26 26 H 1.09005 * 109.47579 * 60.00490 * 1 2 3 27 27 H 1.09003 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46942 * 59.99616 * 3 2 1 29 29 H 1.08998 * 109.47227 * 299.99659 * 3 2 1 30 30 H 1.09004 * 109.47054 * 304.99594 * 4 3 2 31 31 H 1.08994 * 109.46894 * 185.00078 * 4 3 2 32 32 H 1.09003 * 109.47381 * 183.95359 * 6 5 4 33 33 H 1.08999 * 109.47080 * 303.95581 * 6 5 4 34 34 H 1.09004 * 109.46886 * 63.95499 * 6 5 4 35 35 H 1.09005 * 109.46944 * 50.00123 * 7 5 4 36 36 H 1.09002 * 109.47398 * 290.00564 * 7 5 4 37 37 H 1.07994 * 119.94418 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.97138 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.02996 * 180.29325 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5623 -1.2542 6 6 3.6968 1.4347 -2.4023 7 6 5.4035 0.2135 -1.1948 8 6 5.7631 -0.6356 -2.3867 9 6 5.6606 -2.0126 -2.3102 10 6 5.9902 -2.7943 -3.4018 11 6 6.4167 -2.2009 -4.5743 12 6 6.5261 -0.8203 -4.6516 13 8 6.9516 -0.2346 -5.8018 14 6 7.2750 -1.1019 -6.8904 15 6 7.7304 -0.2676 -8.0893 16 6 8.0709 -1.1822 -9.2376 17 1 7.9719 -2.2516 -9.1238 18 6 8.5077 -0.6538 -10.4338 19 7 8.8043 -1.4520 -11.4361 20 14 8.6767 1.1961 -10.6314 21 1 10.0450 1.6135 -10.2326 22 1 8.4401 1.5661 -12.0500 23 1 7.6797 1.8792 -9.7687 24 6 6.1951 -0.0379 -3.5546 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6884 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8507 0.5687 0.8428 31 1 3.9783 2.1767 0.0902 32 1 3.9697 0.9213 -3.3242 33 1 2.6344 1.6777 -2.4225 34 1 4.2778 2.3526 -2.3119 35 1 5.6036 -0.3427 -0.2789 36 1 6.0014 1.1248 -1.2043 37 1 5.3226 -2.4780 -1.3962 38 1 5.9098 -3.8695 -3.3394 39 1 6.6695 -2.8117 -5.4284 40 1 8.0770 -1.7769 -6.5914 41 1 6.3949 -1.6829 -7.1659 42 1 6.9281 0.4071 -8.3882 43 1 8.6104 0.3138 -7.8143 44 1 9.1119 -1.0801 -12.2775 45 1 6.2756 1.0375 -3.6136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127126447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = -57.595492 kcal Electronic energy + Delta-G solvation = -22834.394905 eV Core-core repulsion = 19431.429938 eV Total energy + Delta-G solvation = -3402.964967 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94972 -38.72006 -37.65096 -36.39235 -33.34886 -31.95824 -31.07804 -29.65846 -29.41201 -27.36206 -26.55292 -25.32528 -24.22325 -22.31062 -21.60955 -21.01112 -20.07938 -17.65444 -16.84111 -16.71160 -16.63780 -15.80557 -15.65632 -15.46039 -15.43981 -15.11780 -14.82137 -14.34985 -14.08941 -13.69501 -13.13804 -13.07252 -12.83430 -12.69280 -12.48025 -12.26208 -12.06706 -11.83920 -11.72988 -11.58101 -11.38513 -11.31371 -11.11585 -10.80262 -10.57935 -10.17542 -9.98066 -9.90012 -9.81117 -9.34420 -8.78103 -8.62599 -8.42680 -7.84991 -6.13686 -4.14520 1.44177 1.70610 3.28079 3.35296 3.40763 3.50255 3.61712 3.78633 4.13556 4.38733 4.64359 4.71077 4.83820 4.94033 5.01097 5.05367 5.08078 5.15564 5.18642 5.20351 5.25406 5.35150 5.39397 5.42711 5.49748 5.50807 5.56269 5.65229 5.82458 5.91663 5.93440 5.98446 6.18018 6.42992 6.54799 6.66725 6.71724 6.76703 6.83956 6.92259 6.99552 7.13190 7.23218 7.62634 7.94524 8.38758 8.87169 9.46585 10.98839 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002606 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.649646 B =10743.118244 C =11165.772823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.064 3.936 4 C 0.055 3.945 5 N -0.527 5.527 6 C 0.016 3.984 7 C 0.098 3.902 8 C -0.045 4.045 9 C -0.145 4.145 10 C -0.081 4.081 11 C -0.209 4.209 12 C 0.142 3.858 13 O -0.321 6.321 14 C 0.073 3.927 15 C -0.009 4.009 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.156 4.156 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 4.866 25.494 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.013 4.013 4 C -0.073 4.073 5 N -0.251 5.251 6 C -0.132 4.132 7 C -0.029 4.029 8 C -0.046 4.046 9 C -0.164 4.164 10 C -0.099 4.099 11 C -0.228 4.228 12 C 0.095 3.905 13 O -0.235 6.235 14 C -0.001 4.001 15 C -0.046 4.046 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.175 4.175 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.825 4.475 25.183 28.613 hybrid contribution 0.359 1.615 -0.320 1.685 sum -12.466 6.090 24.863 28.472 Atomic orbital electron populations 1.22727 0.81646 1.02716 0.99535 1.88014 1.18907 1.27038 1.95219 1.22587 0.93455 0.85370 0.99880 1.22152 0.93741 0.98176 0.93225 1.61930 1.16913 1.43643 1.02570 1.22558 1.01043 0.94757 0.94827 1.21026 0.87719 0.97617 0.96586 1.19325 0.97558 0.93852 0.93818 1.20775 1.03627 0.92899 0.99105 1.20908 0.97011 0.99574 0.92406 1.21401 1.07272 0.94027 1.00102 1.19083 0.93089 0.91328 0.86968 1.86107 1.79342 1.37872 1.20161 1.23061 0.99084 0.93316 0.84648 1.19580 0.96941 0.96603 0.91495 1.20843 1.45623 0.94661 0.95295 0.90740 1.24938 0.94379 0.98208 0.95524 1.69893 1.44947 1.35137 1.03594 0.86754 0.79204 0.85865 0.77416 1.20075 1.21179 1.18770 1.20249 1.06115 0.99526 0.91621 0.94535 0.94265 0.89681 0.93196 0.93118 0.89797 0.93338 0.90245 0.91540 0.95674 0.89795 0.93943 0.86277 0.86096 0.85202 0.92559 0.92529 0.95455 0.95883 0.92454 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.37 -3.83 10.65 -35.23 -0.38 -4.20 16 3 C 0.06 0.51 6.00 37.16 0.22 0.73 16 4 C 0.05 0.45 5.34 -3.82 -0.02 0.43 16 5 N -0.53 -5.52 4.70 -244.37 -1.15 -6.67 16 6 C 0.02 0.17 8.95 60.07 0.54 0.70 16 7 C 0.10 1.01 5.12 -4.98 -0.03 0.98 16 8 C -0.04 -0.58 4.88 -104.65 -0.51 -1.09 16 9 C -0.15 -1.85 9.70 -39.56 -0.38 -2.23 16 10 C -0.08 -1.09 10.04 -39.61 -0.40 -1.48 16 11 C -0.21 -3.29 9.04 -39.44 -0.36 -3.65 16 12 C 0.14 2.43 6.69 -39.22 -0.26 2.17 16 13 O -0.32 -6.37 10.14 -19.43 -0.20 -6.57 16 14 C 0.07 1.52 4.68 37.16 0.17 1.70 16 15 C -0.01 -0.21 4.41 -27.89 -0.12 -0.34 16 16 C -0.53 -14.91 9.66 -34.44 -0.33 -15.24 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 20 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 C -0.16 -2.30 7.90 -39.43 -0.31 -2.61 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.39 6.26 -51.93 -0.33 0.07 16 30 H 0.08 0.66 7.93 -51.93 -0.41 0.24 16 31 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.08 0.98 6.17 -51.93 -0.32 0.66 16 33 H 0.07 0.63 6.21 -51.93 -0.32 0.31 16 34 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 36 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 40 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 41 H 0.06 1.15 7.65 -51.93 -0.40 0.75 16 42 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.12 1.70 8.03 -52.49 -0.42 1.28 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -31.72 364.73 -8.38 -40.11 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.49 Total: -1.95 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.77 Total: -16.62 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.38 Total: -33.25 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.57 Total: -10.77 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.72 -8.38 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127126447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.486 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds