Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99520 * 2 1 4 4 C 1.53001 * 109.46820 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47271 * 64.99595 * 4 3 2 6 6 C 1.46903 * 110.99705 * 66.04462 * 5 4 3 7 7 C 1.46896 * 111.00284 * 189.99801 * 5 4 3 8 8 C 1.50697 * 109.47382 * 170.00109 * 7 5 4 9 9 C 1.38284 * 119.97210 * 269.97968 * 8 7 5 10 10 C 1.38250 * 120.10839 * 180.02562 * 9 8 7 11 11 C 1.38161 * 120.05581 * 359.68103 * 10 9 8 12 12 C 1.38710 * 119.94432 * 0.61525 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.67631 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 5 25 25 H 1.08999 * 109.47719 * 299.99924 * 1 2 3 26 26 H 1.09005 * 109.47579 * 60.00490 * 1 2 3 27 27 H 1.09003 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46942 * 59.99616 * 3 2 1 29 29 H 1.08998 * 109.47227 * 299.99659 * 3 2 1 30 30 H 1.09004 * 109.47054 * 304.99594 * 4 3 2 31 31 H 1.08994 * 109.46894 * 185.00078 * 4 3 2 32 32 H 1.09003 * 109.47381 * 183.95359 * 6 5 4 33 33 H 1.08999 * 109.47080 * 303.95581 * 6 5 4 34 34 H 1.09004 * 109.46886 * 63.95499 * 6 5 4 35 35 H 1.09005 * 109.46944 * 50.00123 * 7 5 4 36 36 H 1.09002 * 109.47398 * 290.00564 * 7 5 4 37 37 H 1.07994 * 119.94418 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.97138 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.02996 * 180.29325 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5623 -1.2542 6 6 3.6968 1.4347 -2.4023 7 6 5.4035 0.2135 -1.1948 8 6 5.7631 -0.6356 -2.3867 9 6 5.6606 -2.0126 -2.3102 10 6 5.9902 -2.7943 -3.4018 11 6 6.4167 -2.2009 -4.5743 12 6 6.5261 -0.8203 -4.6516 13 8 6.9516 -0.2346 -5.8018 14 6 7.2750 -1.1019 -6.8904 15 6 7.7304 -0.2676 -8.0893 16 6 8.0709 -1.1822 -9.2376 17 1 7.9719 -2.2516 -9.1238 18 6 8.5077 -0.6538 -10.4338 19 7 8.8043 -1.4520 -11.4361 20 14 8.6767 1.1961 -10.6314 21 1 10.0450 1.6135 -10.2326 22 1 8.4401 1.5661 -12.0500 23 1 7.6797 1.8792 -9.7687 24 6 6.1951 -0.0379 -3.5546 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6884 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8507 0.5687 0.8428 31 1 3.9783 2.1767 0.0902 32 1 3.9697 0.9213 -3.3242 33 1 2.6344 1.6777 -2.4225 34 1 4.2778 2.3526 -2.3119 35 1 5.6036 -0.3427 -0.2789 36 1 6.0014 1.1248 -1.2043 37 1 5.3226 -2.4780 -1.3962 38 1 5.9098 -3.8695 -3.3394 39 1 6.6695 -2.8117 -5.4284 40 1 8.0770 -1.7769 -6.5914 41 1 6.3949 -1.6829 -7.1659 42 1 6.9281 0.4071 -8.3882 43 1 8.6104 0.3138 -7.8143 44 1 9.1119 -1.0801 -12.2775 45 1 6.2756 1.0375 -3.6136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127126447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = -78.090123 kcal Electronic energy + Delta-G solvation = -22835.283619 eV Core-core repulsion = 19431.429938 eV Total energy + Delta-G solvation = -3403.853681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15137 -39.57274 -38.64465 -37.30917 -35.42442 -32.94248 -32.88886 -30.83252 -30.32600 -28.22646 -27.26735 -26.99142 -25.16603 -23.47093 -23.02001 -21.99164 -21.40976 -19.30756 -18.36389 -17.45944 -17.38943 -16.98558 -16.93486 -16.86694 -16.35235 -16.13070 -15.87976 -15.67353 -15.08918 -14.87482 -14.56351 -14.41714 -14.25595 -13.86857 -13.50727 -13.22250 -13.08289 -12.92671 -12.77836 -12.56701 -12.52999 -12.46122 -12.33379 -12.06008 -11.95412 -11.77215 -11.66457 -11.55540 -11.40172 -10.82964 -10.50004 -9.83164 -9.20457 -9.08876 -8.36200 -6.43135 0.34639 0.55132 1.34860 1.36336 1.49191 2.31999 2.32197 2.69545 2.96351 2.98551 3.22415 3.79977 3.90470 4.04785 4.13924 4.19845 4.20466 4.25094 4.32849 4.39992 4.46307 4.46828 4.52966 4.57443 4.58538 4.62344 4.64914 4.70227 4.76297 4.80325 4.91101 4.93543 5.07871 5.10350 5.13966 5.28143 5.41715 5.48395 5.54995 5.66717 5.89116 6.05854 6.10982 6.14918 6.39655 6.52934 6.62372 7.21985 8.79525 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002606 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.649646 B =10743.118244 C =11165.772823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.061 3.939 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.020 3.980 7 C 0.100 3.900 8 C -0.041 4.041 9 C -0.140 4.140 10 C -0.081 4.081 11 C -0.224 4.224 12 C 0.107 3.893 13 O -0.336 6.336 14 C 0.088 3.912 15 C -0.005 4.005 16 C -0.537 4.537 17 H 0.041 0.959 18 C 0.013 3.987 19 N -0.942 5.942 20 Si 0.950 3.050 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.251 1.251 24 C -0.157 4.157 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 6.359 28.115 31.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.015 4.015 4 C -0.072 4.072 5 N -0.266 5.266 6 C -0.128 4.128 7 C -0.027 4.027 8 C -0.042 4.042 9 C -0.158 4.158 10 C -0.099 4.099 11 C -0.243 4.243 12 C 0.062 3.938 13 O -0.251 6.251 14 C 0.013 3.987 15 C -0.043 4.043 16 C -0.575 4.575 17 H 0.059 0.941 18 C -0.185 4.185 19 N -0.581 5.581 20 Si 0.773 3.227 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.175 1.175 24 C -0.176 4.176 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.629 5.964 27.835 31.561 hybrid contribution 0.525 1.053 -1.000 1.544 sum -13.104 7.017 26.835 30.677 Atomic orbital electron populations 1.22841 0.80478 1.03279 1.00368 1.87961 1.20381 1.28426 1.95431 1.22700 0.93281 0.84791 1.00770 1.22233 0.93938 0.98994 0.92082 1.61901 1.16814 1.44348 1.03492 1.22478 1.01556 0.94811 0.93999 1.21054 0.87979 0.97778 0.95873 1.19659 0.96116 0.94446 0.93937 1.21144 1.02113 0.92911 0.99646 1.21211 0.96042 1.01035 0.91638 1.21477 1.08237 0.93588 1.01007 1.19400 0.95376 0.92343 0.86700 1.86018 1.80449 1.37819 1.20800 1.22643 0.99012 0.92614 0.84404 1.19437 0.97017 0.96191 0.91649 1.21104 1.45520 0.93897 0.96998 0.94056 1.25893 0.93928 1.03631 0.95072 1.70026 1.46157 1.37587 1.04368 0.85665 0.79882 0.79338 0.77860 1.18895 1.20380 1.17461 1.20400 1.05924 0.99704 0.91585 0.92982 0.94112 0.89367 0.91185 0.93279 0.89261 0.91682 0.92618 0.90980 0.94785 0.88011 0.93129 0.83780 0.83631 0.86000 0.92513 0.92664 0.95463 0.95484 0.92067 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.49 10.65 -148.98 -1.59 -9.07 16 3 C 0.06 0.83 6.00 71.98 0.43 1.26 16 4 C 0.05 0.74 5.34 86.30 0.46 1.20 16 5 N -0.54 -10.07 4.70 -927.04 -4.36 -14.43 16 6 C 0.02 0.38 8.95 127.69 1.14 1.52 16 7 C 0.10 1.79 5.12 85.56 0.44 2.23 16 8 C -0.04 -0.97 4.88 -19.88 -0.10 -1.07 16 9 C -0.14 -3.22 9.70 22.28 0.22 -3.00 16 10 C -0.08 -2.06 10.04 22.25 0.22 -1.84 16 11 C -0.22 -7.07 9.04 22.36 0.20 -6.87 16 12 C 0.11 3.69 6.69 22.50 0.15 3.84 16 13 O -0.34 -13.52 10.14 -92.43 -0.94 -14.46 16 14 C 0.09 3.76 4.68 71.98 0.34 4.09 16 15 C -0.01 -0.27 4.41 29.85 0.13 -0.14 16 16 C -0.54 -31.25 9.66 25.60 0.25 -31.00 16 17 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 18 C 0.01 0.76 5.47 84.65 0.46 1.22 16 19 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 20 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 24 C -0.16 -4.53 7.90 22.37 0.18 -4.35 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.67 6.26 -2.39 -0.01 0.65 16 30 H 0.09 1.11 7.93 -2.39 -0.02 1.10 16 31 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.05 1.34 6.17 -2.39 -0.01 1.32 16 33 H 0.07 1.27 6.21 -2.39 -0.01 1.26 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 1.47 7.87 -2.38 -0.02 1.46 16 36 H 0.05 0.84 8.06 -2.39 -0.02 0.82 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.12 3.94 6.30 -2.91 -0.02 3.92 16 40 H 0.06 2.37 7.67 -2.39 -0.02 2.35 16 41 H 0.06 2.32 7.65 -2.39 -0.02 2.31 16 42 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 43 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.13 3.44 8.03 -2.91 -0.02 3.42 16 Total: -1.00 -68.94 364.73 1.97 -66.97 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.89 Total: 14.21 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 5.77 Total: -31.31 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -4.06 Total: -72.75 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -2.52 Total: -23.53 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -68.94 1.97 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127126447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.117 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds