Wall clock time and date at job start Tue Mar 31 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47028 * 2 1 4 4 C 1.46901 * 110.99920 * 298.66274 * 3 2 1 5 5 C 1.50692 * 109.47406 * 288.68704 * 4 3 2 6 6 H 1.08006 * 120.00250 * 0.27875 * 5 4 3 7 7 C 1.37877 * 120.00092 * 180.28229 * 5 4 3 8 8 N 1.31519 * 120.00249 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99960 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47193 * 90.00356 * 9 7 5 11 11 H 1.48508 * 109.47014 * 209.99955 * 9 7 5 12 12 H 1.48494 * 109.46890 * 329.99948 * 9 7 5 13 13 C 1.46896 * 110.99942 * 62.61978 * 3 2 1 14 14 C 1.50701 * 109.47177 * 66.04430 * 13 3 2 15 15 C 1.38284 * 119.97354 * 269.97669 * 14 13 3 16 16 C 1.38242 * 120.11006 * 180.02562 * 15 14 13 17 17 C 1.38167 * 120.05672 * 359.67680 * 16 15 14 18 18 C 1.38707 * 119.94234 * 0.62145 * 17 16 15 19 19 O 1.35900 * 120.05947 * 179.68036 * 18 17 16 20 20 C 1.42903 * 116.99785 * 359.72184 * 19 18 17 21 21 C 1.52994 * 109.47599 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46831 * 64.99713 * 21 20 19 23 23 C 1.42902 * 114.00043 * 179.97438 * 22 21 20 24 24 C 1.38127 * 119.96816 * 90.00345 * 14 13 3 25 25 H 1.09002 * 109.46995 * 182.74071 * 1 2 3 26 26 H 1.08992 * 109.47588 * 302.74003 * 1 2 3 27 27 H 1.09008 * 109.46998 * 62.74506 * 1 2 3 28 28 H 1.09001 * 109.47173 * 239.99544 * 2 1 3 29 29 H 1.09000 * 109.47169 * 120.00059 * 2 1 3 30 30 H 1.09005 * 109.46626 * 48.68690 * 4 3 2 31 31 H 1.08996 * 109.46907 * 168.68142 * 4 3 2 32 32 H 0.96996 * 120.00196 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47276 * 306.04591 * 13 3 2 34 34 H 1.09004 * 109.46971 * 186.05001 * 13 3 2 35 35 H 1.07998 * 119.94122 * 359.97438 * 15 14 13 36 36 H 1.07999 * 119.97337 * 179.97438 * 16 15 14 37 37 H 1.08000 * 120.02710 * 180.30214 * 17 16 15 38 38 H 1.08998 * 109.47155 * 60.00349 * 20 19 18 39 39 H 1.08998 * 109.47154 * 300.00730 * 20 19 18 40 40 H 1.08996 * 109.47804 * 184.99987 * 21 20 19 41 41 H 1.09006 * 109.47105 * 305.00489 * 21 20 19 42 42 H 1.09004 * 109.47494 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47705 * 300.00518 * 23 22 21 44 44 H 1.09005 * 109.46856 * 60.00643 * 23 22 21 45 45 H 1.07999 * 120.03047 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5749 2.1006 -1.2034 5 6 2.3208 1.5771 -2.4036 6 1 3.0489 0.7882 -2.2851 7 6 2.0738 2.1052 -3.6530 8 7 2.7251 1.6487 -4.7004 9 14 0.8141 3.4692 -3.8581 10 1 1.4820 4.7868 -3.7064 11 1 0.2007 3.3777 -5.2075 12 1 -0.2418 3.3274 -2.8237 13 6 1.6005 2.0915 1.2178 14 6 2.2750 1.4728 2.4149 15 6 1.6661 0.4299 3.0887 16 6 2.2821 -0.1394 4.1876 17 6 3.5113 0.3280 4.6113 18 6 4.1213 1.3780 3.9409 19 8 5.3273 1.8439 4.3596 20 6 5.9072 1.2094 5.5012 21 6 7.2523 1.8646 5.8207 22 8 7.0397 3.2229 6.2104 23 6 8.2392 3.9296 6.5328 24 6 3.5008 1.9481 2.8385 25 1 -0.3633 -1.0265 0.0491 26 1 -0.3634 0.5557 0.8643 27 1 -0.3633 0.4707 -0.9136 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5052 1.9450 -1.3440 31 1 1.7749 3.1657 -1.0874 32 1 2.5511 2.0200 -5.5795 33 1 0.5191 2.0132 1.3293 34 1 1.8829 3.1417 1.1439 35 1 0.7073 0.0603 2.7564 36 1 1.8043 -0.9535 4.7124 37 1 3.9944 -0.1204 5.4668 38 1 6.0593 0.1508 5.2903 39 1 5.2388 1.3172 6.3554 40 1 7.7354 1.3244 6.6348 41 1 7.8896 1.8357 4.9369 42 1 7.9928 4.9522 6.8188 43 1 8.7424 3.4321 7.3619 44 1 8.8974 3.9435 5.6640 45 1 3.9755 2.7632 2.3125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127600363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:46 Heat of formation + Delta-G solvation = -48.326394 kcal Electronic energy + Delta-G solvation = -23290.074389 eV Core-core repulsion = 19887.511361 eV Total energy + Delta-G solvation = -3402.563029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.15221 -38.55067 -37.74169 -36.44294 -32.59497 -31.58866 -31.26800 -29.68332 -29.22994 -27.50622 -26.62649 -24.94684 -23.44148 -22.74658 -22.26373 -20.79237 -19.27008 -17.74524 -17.09633 -16.67109 -16.37694 -16.03018 -15.70001 -15.34257 -15.16921 -14.89404 -14.77836 -14.08749 -13.86347 -13.31602 -13.16393 -12.97642 -12.82820 -12.50154 -12.30302 -12.13244 -11.82289 -11.65717 -11.57172 -11.47139 -11.15077 -11.09864 -10.83224 -10.75045 -10.49688 -10.37772 -10.02537 -9.93425 -9.85172 -9.25910 -8.64258 -8.51655 -8.03014 -7.25858 -6.00681 -3.96996 1.50106 1.63316 3.12707 3.30932 3.38313 3.39631 3.41213 3.91776 4.45327 4.57659 4.78288 4.88803 4.88938 4.98667 4.99416 5.05896 5.06383 5.12826 5.25752 5.32168 5.33802 5.38443 5.50698 5.51935 5.69430 5.76105 5.85718 5.93030 6.09043 6.11036 6.23283 6.38498 6.46061 6.52568 6.57355 6.77650 6.80249 6.86589 6.95793 6.98919 7.09452 7.52363 7.65945 7.94854 8.09452 8.71351 9.09703 9.61277 11.12733 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.003255 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.966973 B = 8599.017332 C = 9637.616573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 N -0.517 5.517 4 C 0.157 3.843 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.081 3.919 14 C -0.022 4.022 15 C -0.152 4.152 16 C -0.085 4.085 17 C -0.218 4.218 18 C 0.127 3.873 19 O -0.307 6.307 20 C 0.062 3.938 21 C 0.062 3.938 22 O -0.384 6.384 23 C 0.031 3.969 24 C -0.128 4.128 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.061 0.939 30 H -0.002 1.002 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.040 0.960 44 H 0.043 0.957 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -1.475 23.778 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.073 4.073 3 N -0.240 5.240 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.047 4.047 14 C -0.022 4.022 15 C -0.170 4.170 16 C -0.103 4.103 17 C -0.237 4.237 18 C 0.082 3.918 19 O -0.221 6.221 20 C -0.013 4.013 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.066 4.066 24 C -0.148 4.148 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.015 0.985 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.828 -1.210 23.481 24.003 hybrid contribution -1.216 0.434 -0.088 1.294 sum 3.612 -0.776 23.393 23.683 Atomic orbital electron populations 1.22427 0.99611 1.01116 1.01815 1.22069 0.91827 0.91129 1.02225 1.62212 1.59088 1.01896 1.00813 1.20275 0.94541 0.93787 0.88302 1.21019 1.22654 1.21114 0.89334 0.90182 1.24889 0.95959 0.96650 0.95890 1.69894 1.42109 1.42976 0.99160 0.86898 0.82428 0.83141 0.77501 1.20180 1.21293 1.19288 1.21157 0.96568 0.98142 0.88828 1.19691 0.93354 0.94449 0.94742 1.20993 1.01138 0.97977 0.96920 1.20811 0.94364 0.98887 0.96226 1.21094 0.98668 1.00583 1.03386 1.18960 0.85117 0.93460 0.94295 1.86135 1.31936 1.58407 1.45617 1.22773 0.94152 0.96226 0.88176 1.22586 0.95901 0.83523 0.99447 1.87976 1.30752 1.23598 1.87958 1.22762 0.87485 0.97238 0.99087 1.20319 0.95455 1.02945 0.96034 0.93075 0.93479 0.91704 0.89779 0.92058 0.98454 0.96063 0.92744 0.94124 0.90395 0.86176 0.86249 0.86146 0.90534 0.91318 0.91267 0.91893 0.89488 0.94186 0.93806 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.13 37.16 0.34 -2.90 16 2 C 0.06 1.07 5.55 -3.82 -0.02 1.05 16 3 N -0.52 -10.89 4.65 -237.52 -1.11 -12.00 16 4 C 0.16 3.80 3.64 -4.98 -0.02 3.78 16 5 C -0.50 -14.37 9.12 -34.44 -0.31 -14.68 16 6 H 0.08 2.51 7.70 -52.48 -0.40 2.11 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 9 Si 0.87 21.61 27.46 -169.99 -4.67 16.94 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.36 6.55 56.52 0.37 -5.99 16 13 C 0.08 1.42 4.91 -4.98 -0.02 1.39 16 14 C -0.02 -0.35 4.88 -104.65 -0.51 -0.86 16 15 C -0.15 -2.13 7.92 -39.56 -0.31 -2.44 16 16 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 17 C -0.22 -2.74 9.04 -39.43 -0.36 -3.10 16 18 C 0.13 1.86 6.69 -39.22 -0.26 1.60 16 19 O -0.31 -4.34 10.10 -24.28 -0.25 -4.58 16 20 C 0.06 0.61 5.12 37.15 0.19 0.80 16 21 C 0.06 0.54 6.32 37.15 0.23 0.77 16 22 O -0.38 -4.19 10.67 -40.09 -0.43 -4.61 16 23 C 0.03 0.23 11.01 101.05 1.11 1.34 16 24 C -0.13 -2.08 9.64 -39.43 -0.38 -2.46 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.72 5.59 -51.93 -0.29 0.43 16 27 H 0.06 1.24 6.34 -51.92 -0.33 0.91 16 28 H 0.08 1.82 7.20 -51.93 -0.37 1.44 16 29 H 0.06 1.07 5.98 -51.93 -0.31 0.76 16 30 H 0.00 -0.05 4.96 -51.93 -0.26 -0.31 16 31 H 0.02 0.52 7.24 -51.93 -0.38 0.14 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.04 0.67 5.97 -51.93 -0.31 0.36 16 34 H 0.08 1.35 7.81 -51.93 -0.41 0.94 16 35 H 0.12 1.56 7.24 -52.49 -0.38 1.18 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 38 H 0.08 0.60 7.65 -51.93 -0.40 0.20 16 39 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -32.81 357.03 -8.22 -41.03 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.11 Total: 0.25 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.82 Total: -15.30 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.33 Total: -39.10 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.67 Total: -9.20 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.81 -8.22 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127600363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.296 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds