Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47028 * 2 1 4 4 C 1.46901 * 110.99920 * 298.66274 * 3 2 1 5 5 C 1.50692 * 109.47406 * 288.68704 * 4 3 2 6 6 H 1.08006 * 120.00250 * 0.27875 * 5 4 3 7 7 C 1.37877 * 120.00092 * 180.28229 * 5 4 3 8 8 N 1.31519 * 120.00249 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99960 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47193 * 90.00356 * 9 7 5 11 11 H 1.48508 * 109.47014 * 209.99955 * 9 7 5 12 12 H 1.48494 * 109.46890 * 329.99948 * 9 7 5 13 13 C 1.46896 * 110.99942 * 62.61978 * 3 2 1 14 14 C 1.50701 * 109.47177 * 66.04430 * 13 3 2 15 15 C 1.38284 * 119.97354 * 269.97669 * 14 13 3 16 16 C 1.38242 * 120.11006 * 180.02562 * 15 14 13 17 17 C 1.38167 * 120.05672 * 359.67680 * 16 15 14 18 18 C 1.38707 * 119.94234 * 0.62145 * 17 16 15 19 19 O 1.35900 * 120.05947 * 179.68036 * 18 17 16 20 20 C 1.42903 * 116.99785 * 359.72184 * 19 18 17 21 21 C 1.52994 * 109.47599 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46831 * 64.99713 * 21 20 19 23 23 C 1.42902 * 114.00043 * 179.97438 * 22 21 20 24 24 C 1.38127 * 119.96816 * 90.00345 * 14 13 3 25 25 H 1.09002 * 109.46995 * 182.74071 * 1 2 3 26 26 H 1.08992 * 109.47588 * 302.74003 * 1 2 3 27 27 H 1.09008 * 109.46998 * 62.74506 * 1 2 3 28 28 H 1.09001 * 109.47173 * 239.99544 * 2 1 3 29 29 H 1.09000 * 109.47169 * 120.00059 * 2 1 3 30 30 H 1.09005 * 109.46626 * 48.68690 * 4 3 2 31 31 H 1.08996 * 109.46907 * 168.68142 * 4 3 2 32 32 H 0.96996 * 120.00196 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47276 * 306.04591 * 13 3 2 34 34 H 1.09004 * 109.46971 * 186.05001 * 13 3 2 35 35 H 1.07998 * 119.94122 * 359.97438 * 15 14 13 36 36 H 1.07999 * 119.97337 * 179.97438 * 16 15 14 37 37 H 1.08000 * 120.02710 * 180.30214 * 17 16 15 38 38 H 1.08998 * 109.47155 * 60.00349 * 20 19 18 39 39 H 1.08998 * 109.47154 * 300.00730 * 20 19 18 40 40 H 1.08996 * 109.47804 * 184.99987 * 21 20 19 41 41 H 1.09006 * 109.47105 * 305.00489 * 21 20 19 42 42 H 1.09004 * 109.47494 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47705 * 300.00518 * 23 22 21 44 44 H 1.09005 * 109.46856 * 60.00643 * 23 22 21 45 45 H 1.07999 * 120.03047 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5749 2.1006 -1.2034 5 6 2.3208 1.5771 -2.4036 6 1 3.0489 0.7882 -2.2851 7 6 2.0738 2.1052 -3.6530 8 7 2.7251 1.6487 -4.7004 9 14 0.8141 3.4692 -3.8581 10 1 1.4820 4.7868 -3.7064 11 1 0.2007 3.3777 -5.2075 12 1 -0.2418 3.3274 -2.8237 13 6 1.6005 2.0915 1.2178 14 6 2.2750 1.4728 2.4149 15 6 1.6661 0.4299 3.0887 16 6 2.2821 -0.1394 4.1876 17 6 3.5113 0.3280 4.6113 18 6 4.1213 1.3780 3.9409 19 8 5.3273 1.8439 4.3596 20 6 5.9072 1.2094 5.5012 21 6 7.2523 1.8646 5.8207 22 8 7.0397 3.2229 6.2104 23 6 8.2392 3.9296 6.5328 24 6 3.5008 1.9481 2.8385 25 1 -0.3633 -1.0265 0.0491 26 1 -0.3634 0.5557 0.8643 27 1 -0.3633 0.4707 -0.9136 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5052 1.9450 -1.3440 31 1 1.7749 3.1657 -1.0874 32 1 2.5511 2.0200 -5.5795 33 1 0.5191 2.0132 1.3293 34 1 1.8829 3.1417 1.1439 35 1 0.7073 0.0603 2.7564 36 1 1.8043 -0.9535 4.7124 37 1 3.9944 -0.1204 5.4668 38 1 6.0593 0.1508 5.2903 39 1 5.2388 1.3172 6.3554 40 1 7.7354 1.3244 6.6348 41 1 7.8896 1.8357 4.9369 42 1 7.9928 4.9522 6.8188 43 1 8.7424 3.4321 7.3619 44 1 8.8974 3.9435 5.6640 45 1 3.9755 2.7632 2.3125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127600363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -70.678741 kcal Electronic energy + Delta-G solvation = -23291.043660 eV Core-core repulsion = 19887.511361 eV Total energy + Delta-G solvation = -3403.532299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18641 -39.66533 -38.69623 -37.67865 -34.72791 -32.77845 -32.16420 -31.31540 -30.22573 -29.19916 -27.26354 -26.34398 -24.74451 -24.04841 -23.39097 -22.01598 -20.78455 -18.97866 -18.63696 -17.80617 -17.32069 -17.10321 -16.67290 -16.61348 -16.43104 -16.12831 -16.01227 -15.62859 -15.02117 -14.68651 -14.52933 -14.30866 -14.14742 -13.62899 -13.44330 -13.30838 -13.18305 -12.89103 -12.79189 -12.64652 -12.48421 -12.37131 -12.23813 -12.06604 -11.88873 -11.74827 -11.64299 -11.47366 -11.39276 -10.75623 -10.67454 -9.76343 -9.10655 -8.86039 -8.26295 -6.28543 0.41031 0.56422 1.35151 1.36272 1.46894 2.25073 2.35429 2.78755 2.81327 3.07166 3.47716 3.81528 3.92352 4.02995 4.11056 4.14444 4.25135 4.29220 4.34386 4.39124 4.45812 4.49930 4.52416 4.54377 4.54953 4.62870 4.69043 4.71918 4.79244 4.85613 4.92714 4.96297 5.10190 5.14101 5.26778 5.38651 5.44505 5.54623 5.58499 5.74019 5.89279 6.02705 6.18341 6.44134 6.54482 6.68472 6.77341 7.34352 8.90866 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.003255 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.966973 B = 8599.017332 C = 9637.616573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 N -0.539 5.539 4 C 0.168 3.832 5 C -0.509 4.509 6 H 0.033 0.967 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.248 1.248 13 C 0.085 3.915 14 C -0.037 4.037 15 C -0.157 4.157 16 C -0.077 4.077 17 C -0.211 4.211 18 C 0.117 3.883 19 O -0.333 6.333 20 C 0.053 3.947 21 C 0.059 3.941 22 O -0.418 6.418 23 C 0.025 3.975 24 C -0.157 4.157 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.005 0.995 31 H 0.022 0.978 32 H 0.266 0.734 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -1.928 26.739 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.069 4.069 3 N -0.262 5.262 4 C 0.041 3.959 5 C -0.548 4.548 6 H 0.051 0.949 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.171 1.171 13 C -0.042 4.042 14 C -0.037 4.037 15 C -0.175 4.175 16 C -0.095 4.095 17 C -0.230 4.230 18 C 0.072 3.928 19 O -0.247 6.247 20 C -0.022 4.022 21 C -0.017 4.017 22 O -0.338 6.338 23 C -0.070 4.070 24 C -0.176 4.176 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.420 -1.671 26.477 26.749 hybrid contribution -0.611 0.483 -0.896 1.187 sum 2.809 -1.188 25.581 25.762 Atomic orbital electron populations 1.22320 0.97363 1.02851 1.01456 1.21993 0.93664 0.89938 1.01280 1.62041 1.60279 1.02807 1.01122 1.20007 0.94036 0.93731 0.88116 1.21241 1.21998 1.19955 0.91586 0.94915 1.25840 0.98349 0.99544 0.95322 1.70058 1.44295 1.44978 0.99891 0.85730 0.79850 0.79418 0.78053 1.19264 1.20747 1.17122 1.21132 0.97625 0.97609 0.87822 1.19565 0.93615 0.95803 0.94758 1.21182 1.01707 0.97287 0.97351 1.21235 0.93957 0.98978 0.95314 1.21469 0.98610 0.99308 1.03623 1.19070 0.85554 0.94019 0.94133 1.86113 1.31836 1.59499 1.47282 1.23138 0.94630 0.97357 0.87064 1.22757 0.95413 0.83107 1.00447 1.87923 1.32706 1.24858 1.88266 1.22918 0.86692 0.97537 0.99897 1.20317 0.96316 1.03523 0.97480 0.90605 0.91310 0.94120 0.93553 0.90109 0.97763 0.96005 0.92519 0.92509 0.91030 0.84771 0.82623 0.82971 0.88326 0.90389 0.87870 0.92477 0.89072 0.92096 0.93718 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.82 9.13 71.98 0.66 -5.16 16 2 C 0.06 2.27 5.55 86.30 0.48 2.75 16 3 N -0.54 -23.03 4.65 -905.38 -4.21 -27.24 16 4 C 0.17 8.21 3.64 85.55 0.31 8.52 16 5 C -0.51 -30.31 9.12 25.60 0.23 -30.08 16 6 H 0.03 2.19 7.70 -2.91 -0.02 2.17 16 7 C 0.01 0.37 5.47 84.65 0.46 0.83 16 8 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 9 Si 0.95 44.87 27.46 68.60 1.88 46.76 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.25 -10.85 6.55 99.48 0.65 -10.19 16 13 C 0.09 2.95 4.91 85.56 0.42 3.37 16 14 C -0.04 -1.15 4.88 -19.88 -0.10 -1.25 16 15 C -0.16 -3.98 7.92 22.28 0.18 -3.80 16 16 C -0.08 -1.62 10.04 22.25 0.22 -1.39 16 17 C -0.21 -4.67 9.04 22.37 0.20 -4.46 16 18 C 0.12 3.35 6.69 22.51 0.15 3.50 16 19 O -0.33 -9.28 10.10 -87.79 -0.89 -10.17 16 20 C 0.05 0.93 5.12 71.98 0.37 1.30 16 21 C 0.06 0.92 6.32 71.98 0.45 1.38 16 22 O -0.42 -8.76 10.67 -144.34 -1.54 -10.30 16 23 C 0.03 0.35 11.01 113.37 1.25 1.59 16 24 C -0.16 -5.18 9.64 22.37 0.22 -4.97 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 1.90 5.59 -2.39 -0.01 1.89 16 27 H 0.04 1.50 6.34 -2.38 -0.02 1.48 16 28 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 29 H 0.08 2.75 5.98 -2.39 -0.01 2.74 16 30 H 0.00 0.23 4.96 -2.38 -0.01 0.22 16 31 H 0.02 1.06 7.24 -2.39 -0.02 1.04 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.06 1.76 5.97 -2.39 -0.01 1.75 16 34 H 0.07 2.51 7.81 -2.38 -0.02 2.49 16 35 H 0.13 2.98 7.24 -2.91 -0.02 2.96 16 36 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.15 2.32 6.30 -2.91 -0.02 2.30 16 38 H 0.10 1.26 7.65 -2.39 -0.02 1.24 16 39 H 0.08 1.21 7.67 -2.39 -0.02 1.20 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -74.82 357.03 1.96 -72.86 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.91 Total: 16.54 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 5.51 Total: -27.86 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -3.91 Total: -87.82 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -2.43 Total: -20.47 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -74.82 1.96 -72.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127600363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.177 kcal (2) G-P(sol) polarization free energy of solvation -74.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds