Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46849 * 2 1 4 4 C 1.46893 * 111.00426 * 62.12486 * 3 2 1 5 5 C 1.50706 * 109.46978 * 70.94707 * 4 3 2 6 6 H 1.08002 * 119.99808 * 5.06015 * 5 4 3 7 7 C 1.37873 * 120.00125 * 185.06821 * 5 4 3 8 8 N 1.31507 * 120.00355 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00003 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47509 * 90.00147 * 9 7 5 11 11 H 1.48503 * 109.47509 * 210.00808 * 9 7 5 12 12 H 1.48506 * 109.47029 * 330.00185 * 9 7 5 13 13 C 1.46901 * 111.00048 * 298.16971 * 3 2 1 14 14 C 1.50699 * 109.46944 * 287.26658 * 13 3 2 15 15 C 1.38170 * 120.02802 * 264.99922 * 14 13 3 16 16 C 1.38243 * 120.05489 * 179.97438 * 15 14 13 17 17 C 1.38290 * 120.11440 * 359.97438 * 16 15 14 18 18 C 1.38115 * 120.05389 * 0.02562 * 17 16 15 19 19 C 1.38714 * 120.03233 * 84.98061 * 14 13 3 20 20 O 1.35906 * 120.05034 * 359.97438 * 19 14 13 21 21 C 1.42898 * 116.99529 * 174.84019 * 20 19 14 22 22 C 1.53005 * 109.46809 * 185.15903 * 21 20 19 23 23 O 1.42902 * 109.47406 * 65.43523 * 22 21 20 24 24 C 1.42891 * 114.00071 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47371 * 182.62966 * 1 2 3 26 26 H 1.09003 * 109.47153 * 302.62804 * 1 2 3 27 27 H 1.09004 * 109.47259 * 62.62067 * 1 2 3 28 28 H 1.09001 * 109.47127 * 239.99960 * 2 1 3 29 29 H 1.09000 * 109.47116 * 119.99627 * 2 1 3 30 30 H 1.08997 * 109.47101 * 190.94193 * 4 3 2 31 31 H 1.08996 * 109.47035 * 310.94544 * 4 3 2 32 32 H 0.97003 * 120.00258 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47025 * 167.27009 * 13 3 2 34 34 H 1.08998 * 109.46861 * 47.26508 * 13 3 2 35 35 H 1.07998 * 119.97162 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.94326 * 180.02562 * 16 15 14 37 37 H 1.08000 * 119.97428 * 180.27506 * 17 16 15 38 38 H 1.08005 * 120.03063 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47058 * 305.15465 * 21 20 19 40 40 H 1.09000 * 109.47655 * 65.15597 * 21 20 19 41 41 H 1.08996 * 109.46935 * 185.43917 * 22 21 20 42 42 H 1.09002 * 109.46990 * 305.43745 * 22 21 20 43 43 H 1.09002 * 109.47144 * 180.02562 * 24 23 22 44 44 H 1.09009 * 109.47429 * 299.99958 * 24 23 22 45 45 H 1.08997 * 109.47308 * 59.99652 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5906 2.0951 1.2122 5 6 2.3456 1.5599 2.4016 6 1 3.1288 0.8298 2.2602 7 6 2.0364 2.0022 3.6704 8 7 2.6949 1.5348 4.7084 9 14 0.6822 3.2654 3.9150 10 1 -0.6148 2.5691 4.1107 11 1 0.9859 4.0916 5.1111 12 1 0.5988 4.1399 2.7177 13 6 1.5847 2.0972 -1.2090 14 6 2.3651 1.5946 -2.3961 15 6 3.5010 2.2635 -2.8103 16 6 4.2177 1.8026 -3.8989 17 6 3.8004 0.6712 -4.5758 18 6 2.6656 -0.0010 -4.1658 19 6 1.9441 0.4599 -3.0739 20 8 0.8277 -0.2003 -2.6679 21 6 0.3892 -1.2924 -3.4785 22 6 -0.9406 -1.8248 -2.9406 23 8 -1.9501 -0.8246 -3.0910 24 6 -3.2378 -1.2225 -2.6163 25 1 -0.3634 -1.0265 0.0471 26 1 -0.3633 0.5541 0.8655 27 1 -0.3634 0.4726 -0.9126 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7953 3.1599 1.1012 31 1 0.5216 1.9443 1.3625 32 1 2.4776 1.8463 5.6010 33 1 1.7607 3.1656 -1.0844 34 1 0.5215 1.9205 -1.3720 35 1 3.8292 3.1471 -2.2831 36 1 5.1055 2.3266 -4.2208 37 1 4.3645 0.3106 -5.4232 38 1 2.3403 -0.8848 -4.6944 39 1 0.2556 -0.9520 -4.5053 40 1 1.1354 -2.0864 -3.4531 41 1 -1.2269 -2.7167 -3.4979 42 1 -0.8316 -2.0752 -1.8853 43 1 -3.9477 -0.4090 -2.7664 44 1 -3.5721 -2.1021 -3.1666 45 1 -3.1761 -1.4601 -1.5544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127659771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = -43.711635 kcal Electronic energy + Delta-G solvation = -24709.616834 eV Core-core repulsion = 21307.253916 eV Total energy + Delta-G solvation = -3402.362918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27416 -38.19490 -37.12588 -36.82503 -32.61324 -31.69579 -30.85550 -29.53269 -29.27979 -27.30052 -26.50558 -24.75416 -23.66577 -22.69348 -21.54825 -21.01461 -19.16058 -17.93846 -17.02286 -16.66960 -16.23873 -15.89098 -15.51213 -15.38915 -14.97552 -14.59915 -14.39676 -14.20405 -13.90117 -13.30703 -13.15998 -12.87860 -12.51273 -12.40763 -12.25003 -11.93739 -11.70022 -11.55235 -11.45173 -11.36298 -11.02646 -10.89007 -10.78571 -10.73062 -10.48646 -10.23418 -9.85705 -9.76970 -9.68328 -9.20136 -8.64242 -8.48578 -7.93167 -7.12811 -5.97382 -3.92815 1.54532 1.65656 3.25053 3.32492 3.40157 3.43254 3.55114 3.95972 4.48638 4.70125 4.91069 4.93523 4.98494 5.06678 5.12413 5.18166 5.18837 5.25343 5.28727 5.35288 5.43045 5.52117 5.54775 5.62433 5.85733 5.92235 6.03787 6.09629 6.15595 6.30640 6.32998 6.49264 6.61941 6.65176 6.72345 6.83252 6.92738 6.97514 7.04085 7.10876 7.24040 7.58630 7.73661 8.06593 8.22594 8.78010 9.14054 9.65699 11.16188 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.005449 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.139067 B = 5137.664910 C = 6750.061799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.065 3.935 3 N -0.518 5.518 4 C 0.158 3.842 5 C -0.500 4.500 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.873 3.127 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.089 3.911 14 C -0.088 4.088 15 C -0.066 4.066 16 C -0.159 4.159 17 C -0.092 4.092 18 C -0.213 4.213 19 C 0.133 3.867 20 O -0.290 6.290 21 C 0.059 3.941 22 C 0.061 3.939 23 O -0.382 6.382 24 C 0.031 3.969 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.022 0.978 31 H -0.007 1.007 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -5.678 -20.227 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.063 4.063 3 N -0.241 5.241 4 C 0.032 3.968 5 C -0.538 4.538 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.039 4.039 14 C -0.089 4.089 15 C -0.085 4.085 16 C -0.178 4.178 17 C -0.110 4.110 18 C -0.232 4.232 19 C 0.088 3.912 20 O -0.203 6.203 21 C -0.017 4.017 22 C -0.015 4.015 23 O -0.301 6.301 24 C -0.065 4.065 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.850 -5.456 -19.917 21.463 hybrid contribution -1.589 0.182 0.236 1.617 sum -7.440 -5.275 -19.680 21.690 Atomic orbital electron populations 1.22367 0.99415 1.00501 1.01631 1.21987 0.92133 0.90787 1.01407 1.62232 1.58999 1.02000 1.00877 1.20257 0.94149 0.94010 0.88422 1.21043 1.19114 1.24980 0.88701 0.90243 1.24886 0.96249 0.96277 0.95985 1.69895 1.41641 1.44150 0.98621 0.86902 0.82815 0.82368 0.77888 1.20457 1.21284 1.19242 1.20973 0.96336 0.97826 0.88800 1.19329 0.97584 0.94182 0.97838 1.20918 0.92895 0.99385 0.95273 1.20992 1.01011 0.98151 0.97620 1.20806 0.95706 0.95261 0.99227 1.21104 0.99166 1.03004 0.99923 1.18827 0.86868 0.92078 0.93443 1.86352 1.40657 1.44466 1.48873 1.22768 0.94369 0.89373 0.95141 1.22597 0.86819 0.90688 1.01423 1.87959 1.18236 1.40182 1.83714 1.22742 0.84831 1.00503 0.98433 0.94143 0.92814 0.91883 0.92024 0.90729 0.95960 0.98972 0.92828 0.91068 0.93557 0.85388 0.86315 0.86455 0.86133 0.91515 0.90702 0.91609 0.91639 0.89626 0.94329 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.54 37.16 0.32 -3.03 16 2 C 0.06 1.33 5.35 -3.82 -0.02 1.31 16 3 N -0.52 -11.37 4.60 -237.52 -1.09 -12.46 16 4 C 0.16 3.94 3.65 -4.98 -0.02 3.92 16 5 C -0.50 -14.53 9.02 -34.44 -0.31 -14.85 16 6 H 0.08 2.54 7.86 -52.49 -0.41 2.12 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 9 Si 0.87 22.00 27.37 -169.99 -4.65 17.34 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.51 6.69 56.52 0.38 -6.13 16 13 C 0.09 1.66 4.84 -4.98 -0.02 1.63 16 14 C -0.09 -1.47 5.19 -104.47 -0.54 -2.01 16 15 C -0.07 -0.99 9.68 -39.60 -0.38 -1.37 16 16 C -0.16 -2.05 10.04 -39.56 -0.40 -2.45 16 17 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 18 C -0.21 -2.73 9.03 -39.44 -0.36 -3.08 16 19 C 0.13 2.02 5.65 -39.22 -0.22 1.80 16 20 O -0.29 -4.24 4.84 -23.84 -0.12 -4.35 16 21 C 0.06 0.63 5.13 37.16 0.19 0.82 16 22 C 0.06 0.62 6.32 37.16 0.23 0.86 16 23 O -0.38 -4.67 10.67 -39.63 -0.42 -5.09 16 24 C 0.03 0.29 11.01 101.05 1.11 1.40 16 25 H 0.04 0.66 7.57 -51.93 -0.39 0.27 16 26 H 0.05 1.11 6.11 -51.93 -0.32 0.79 16 27 H 0.06 1.14 4.86 -51.93 -0.25 0.88 16 28 H 0.06 1.18 5.16 -51.93 -0.27 0.91 16 29 H 0.07 1.71 7.26 -51.93 -0.38 1.33 16 30 H 0.02 0.56 7.15 -51.93 -0.37 0.19 16 31 H -0.01 -0.18 4.98 -51.93 -0.26 -0.44 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 1.29 7.63 -51.93 -0.40 0.89 16 34 H 0.05 0.88 5.49 -51.93 -0.29 0.59 16 35 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.23 6.33 -52.48 -0.33 0.90 16 39 H 0.07 0.66 7.60 -51.93 -0.39 0.27 16 40 H 0.07 0.67 7.74 -51.93 -0.40 0.26 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.70 7.57 -51.93 -0.39 0.31 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -32.97 349.67 -8.13 -41.10 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.97 Total: 0.28 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.91 Total: -14.69 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.32 Total: -39.86 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.54 Total: -9.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.65 Total: 17.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.97 -8.13 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127659771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.613 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds