Wall clock time and date at job start Tue Mar 31 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46849 * 2 1 4 4 C 1.46893 * 111.00426 * 62.12486 * 3 2 1 5 5 C 1.50706 * 109.46978 * 70.94707 * 4 3 2 6 6 H 1.08002 * 119.99808 * 5.06015 * 5 4 3 7 7 C 1.37873 * 120.00125 * 185.06821 * 5 4 3 8 8 N 1.31507 * 120.00355 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00003 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47509 * 90.00147 * 9 7 5 11 11 H 1.48503 * 109.47509 * 210.00808 * 9 7 5 12 12 H 1.48506 * 109.47029 * 330.00185 * 9 7 5 13 13 C 1.46901 * 111.00048 * 298.16971 * 3 2 1 14 14 C 1.50699 * 109.46944 * 287.26658 * 13 3 2 15 15 C 1.38170 * 120.02802 * 264.99922 * 14 13 3 16 16 C 1.38243 * 120.05489 * 179.97438 * 15 14 13 17 17 C 1.38290 * 120.11440 * 359.97438 * 16 15 14 18 18 C 1.38115 * 120.05389 * 0.02562 * 17 16 15 19 19 C 1.38714 * 120.03233 * 84.98061 * 14 13 3 20 20 O 1.35906 * 120.05034 * 359.97438 * 19 14 13 21 21 C 1.42898 * 116.99529 * 174.84019 * 20 19 14 22 22 C 1.53005 * 109.46809 * 185.15903 * 21 20 19 23 23 O 1.42902 * 109.47406 * 65.43523 * 22 21 20 24 24 C 1.42891 * 114.00071 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47371 * 182.62966 * 1 2 3 26 26 H 1.09003 * 109.47153 * 302.62804 * 1 2 3 27 27 H 1.09004 * 109.47259 * 62.62067 * 1 2 3 28 28 H 1.09001 * 109.47127 * 239.99960 * 2 1 3 29 29 H 1.09000 * 109.47116 * 119.99627 * 2 1 3 30 30 H 1.08997 * 109.47101 * 190.94193 * 4 3 2 31 31 H 1.08996 * 109.47035 * 310.94544 * 4 3 2 32 32 H 0.97003 * 120.00258 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47025 * 167.27009 * 13 3 2 34 34 H 1.08998 * 109.46861 * 47.26508 * 13 3 2 35 35 H 1.07998 * 119.97162 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.94326 * 180.02562 * 16 15 14 37 37 H 1.08000 * 119.97428 * 180.27506 * 17 16 15 38 38 H 1.08005 * 120.03063 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47058 * 305.15465 * 21 20 19 40 40 H 1.09000 * 109.47655 * 65.15597 * 21 20 19 41 41 H 1.08996 * 109.46935 * 185.43917 * 22 21 20 42 42 H 1.09002 * 109.46990 * 305.43745 * 22 21 20 43 43 H 1.09002 * 109.47144 * 180.02562 * 24 23 22 44 44 H 1.09009 * 109.47429 * 299.99958 * 24 23 22 45 45 H 1.08997 * 109.47308 * 59.99652 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5906 2.0951 1.2122 5 6 2.3456 1.5599 2.4016 6 1 3.1288 0.8298 2.2602 7 6 2.0364 2.0022 3.6704 8 7 2.6949 1.5348 4.7084 9 14 0.6822 3.2654 3.9150 10 1 -0.6148 2.5691 4.1107 11 1 0.9859 4.0916 5.1111 12 1 0.5988 4.1399 2.7177 13 6 1.5847 2.0972 -1.2090 14 6 2.3651 1.5946 -2.3961 15 6 3.5010 2.2635 -2.8103 16 6 4.2177 1.8026 -3.8989 17 6 3.8004 0.6712 -4.5758 18 6 2.6656 -0.0010 -4.1658 19 6 1.9441 0.4599 -3.0739 20 8 0.8277 -0.2003 -2.6679 21 6 0.3892 -1.2924 -3.4785 22 6 -0.9406 -1.8248 -2.9406 23 8 -1.9501 -0.8246 -3.0910 24 6 -3.2378 -1.2225 -2.6163 25 1 -0.3634 -1.0265 0.0471 26 1 -0.3633 0.5541 0.8655 27 1 -0.3634 0.4726 -0.9126 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7953 3.1599 1.1012 31 1 0.5216 1.9443 1.3625 32 1 2.4776 1.8463 5.6010 33 1 1.7607 3.1656 -1.0844 34 1 0.5215 1.9205 -1.3720 35 1 3.8292 3.1471 -2.2831 36 1 5.1055 2.3266 -4.2208 37 1 4.3645 0.3106 -5.4232 38 1 2.3403 -0.8848 -4.6944 39 1 0.2556 -0.9520 -4.5053 40 1 1.1354 -2.0864 -3.4531 41 1 -1.2269 -2.7167 -3.4979 42 1 -0.8316 -2.0752 -1.8853 43 1 -3.9477 -0.4090 -2.7664 44 1 -3.5721 -2.1021 -3.1666 45 1 -3.1761 -1.4601 -1.5544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127659771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:48 Heat of formation + Delta-G solvation = -65.665043 kcal Electronic energy + Delta-G solvation = -24710.568805 eV Core-core repulsion = 21307.253916 eV Total energy + Delta-G solvation = -3403.314889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34373 -39.12076 -38.56582 -37.90323 -34.75355 -32.97368 -31.75577 -31.22787 -30.41738 -29.00484 -27.23463 -26.25517 -24.73935 -24.38599 -22.57039 -22.27631 -20.79502 -18.98460 -18.84219 -17.85148 -17.33548 -16.91234 -16.78386 -16.48369 -16.15466 -16.10443 -15.76377 -15.56304 -15.17233 -14.69427 -14.49115 -14.29377 -14.09399 -13.49990 -13.39365 -13.34704 -13.12787 -12.80068 -12.73987 -12.56260 -12.47389 -12.30464 -12.13787 -12.08580 -11.87869 -11.78445 -11.59366 -11.40390 -11.25398 -10.76073 -10.62434 -9.72436 -9.02579 -8.82173 -8.26789 -6.28411 0.48257 0.61782 1.32552 1.34324 1.45828 2.33203 2.34520 2.82817 2.87219 3.06750 3.51967 3.87643 3.95865 4.04003 4.15256 4.22908 4.35153 4.36974 4.38612 4.42663 4.53141 4.53658 4.54857 4.56126 4.62721 4.69217 4.71458 4.79076 4.80176 4.86076 4.96817 5.03082 5.13797 5.20019 5.29970 5.45868 5.53992 5.58613 5.62966 5.74578 5.99794 6.05103 6.21052 6.46844 6.59740 6.72296 6.77280 7.34749 8.90361 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.005449 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.139067 B = 5137.664910 C = 6750.061799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 N -0.534 5.534 4 C 0.169 3.831 5 C -0.507 4.507 6 H 0.033 0.967 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.252 1.252 13 C 0.097 3.903 14 C -0.122 4.122 15 C -0.081 4.081 16 C -0.163 4.163 17 C -0.085 4.085 18 C -0.213 4.213 19 C 0.123 3.877 20 O -0.312 6.312 21 C 0.051 3.949 22 C 0.059 3.941 23 O -0.411 6.411 24 C 0.027 3.973 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.022 0.978 31 H -0.005 1.005 32 H 0.266 0.734 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -5.931 -22.892 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.054 4.054 3 N -0.257 5.257 4 C 0.042 3.958 5 C -0.545 4.545 6 H 0.051 0.949 7 C -0.187 4.187 8 N -0.590 5.590 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.176 1.176 13 C -0.030 4.030 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.181 4.181 17 C -0.103 4.103 18 C -0.231 4.231 19 C 0.078 3.922 20 O -0.226 6.226 21 C -0.023 4.023 22 C -0.017 4.017 23 O -0.330 6.330 24 C -0.069 4.069 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.844 -5.720 -22.609 24.305 hybrid contribution -1.196 0.140 0.965 1.543 sum -8.039 -5.580 -21.644 23.753 Atomic orbital electron populations 1.22187 0.97720 1.01479 1.00806 1.21861 0.93385 0.89916 1.00279 1.62130 1.59808 1.02669 1.01122 1.19995 0.93483 0.93876 0.88426 1.21212 1.18419 1.24123 0.90794 0.94865 1.25786 0.98957 0.98571 0.95433 1.70047 1.43692 1.45964 0.99318 0.85773 0.79407 0.79639 0.78496 1.19341 1.20471 1.17560 1.20887 0.96558 0.97398 0.88189 1.19259 0.98842 0.96127 0.98068 1.21054 0.92980 0.99590 0.96343 1.21298 1.01421 0.98595 0.96766 1.21267 0.95259 0.94279 0.99487 1.21453 0.98886 1.03745 0.99041 1.18953 0.87396 0.91818 0.94073 1.86292 1.40556 1.45543 1.50215 1.23078 0.95127 0.88909 0.95226 1.22739 0.86303 0.91336 1.01323 1.87915 1.19471 1.41635 1.84020 1.22872 0.83962 1.01622 0.98454 0.92143 0.95145 0.91049 0.90392 0.94398 0.96006 0.98698 0.92500 0.91277 0.93915 0.85676 0.83925 0.83010 0.83310 0.90500 0.88664 0.88430 0.92739 0.89214 0.92181 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.07 8.54 71.98 0.61 -5.46 16 2 C 0.07 3.08 5.35 86.30 0.46 3.54 16 3 N -0.53 -24.06 4.60 -905.37 -4.17 -28.23 16 4 C 0.17 8.62 3.65 85.56 0.31 8.93 16 5 C -0.51 -30.70 9.02 25.60 0.23 -30.47 16 6 H 0.03 2.26 7.86 -2.91 -0.02 2.23 16 7 C 0.01 0.57 5.47 84.65 0.46 1.03 16 8 N -0.95 -60.99 13.96 21.44 0.30 -60.69 16 9 Si 0.94 45.72 27.37 68.60 1.88 47.59 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.25 -11.48 6.69 99.48 0.67 -10.82 16 13 C 0.10 3.66 4.84 85.56 0.41 4.08 16 14 C -0.12 -4.01 5.19 -19.77 -0.10 -4.11 16 15 C -0.08 -2.38 9.68 22.25 0.22 -2.17 16 16 C -0.16 -3.81 10.04 22.28 0.22 -3.59 16 17 C -0.08 -1.75 10.04 22.25 0.22 -1.53 16 18 C -0.21 -4.79 9.03 22.36 0.20 -4.58 16 19 C 0.12 3.55 5.65 22.51 0.13 3.68 16 20 O -0.31 -8.66 4.84 -88.28 -0.43 -9.09 16 21 C 0.05 0.97 5.13 71.98 0.37 1.34 16 22 C 0.06 1.06 6.32 71.98 0.45 1.52 16 23 O -0.41 -9.34 10.67 -144.77 -1.55 -10.89 16 24 C 0.03 0.45 11.01 113.37 1.25 1.70 16 25 H 0.06 1.96 7.57 -2.39 -0.02 1.94 16 26 H 0.03 1.25 6.11 -2.39 -0.01 1.24 16 27 H 0.07 2.55 4.86 -2.39 -0.01 2.54 16 28 H 0.08 3.00 5.16 -2.39 -0.01 2.99 16 29 H 0.04 1.83 7.26 -2.39 -0.02 1.81 16 30 H 0.02 1.11 7.15 -2.39 -0.02 1.09 16 31 H 0.00 -0.23 4.98 -2.39 -0.01 -0.24 16 32 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 33 H 0.07 2.55 7.63 -2.39 -0.02 2.53 16 34 H 0.04 1.62 5.49 -2.39 -0.01 1.61 16 35 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.15 2.42 6.33 -2.91 -0.02 2.40 16 39 H 0.08 1.29 7.60 -2.39 -0.02 1.27 16 40 H 0.10 1.38 7.74 -2.39 -0.02 1.36 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.08 7.57 -2.39 -0.02 1.07 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.92 349.67 2.43 -71.50 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.93 Total: 15.90 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 5.46 Total: -26.10 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.87 Total: -88.92 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.97 Total: -19.97 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.59 kcal Total: -73.92 2.43 -71.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127659771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.834 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds