Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47231 * 2 1 4 4 C 1.46896 * 111.00696 * 288.18713 * 3 2 1 5 5 C 1.50697 * 109.47678 * 160.35899 * 4 3 2 6 6 H 1.08003 * 119.99923 * 4.89768 * 5 4 3 7 7 C 1.37875 * 120.00151 * 184.89449 * 5 4 3 8 8 N 1.31518 * 119.99838 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00058 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46903 * 89.99680 * 9 7 5 11 11 H 1.48500 * 109.47090 * 209.99634 * 9 7 5 12 12 H 1.48497 * 109.47053 * 329.99914 * 9 7 5 13 13 C 1.46905 * 110.99855 * 164.22854 * 3 2 1 14 14 C 1.50697 * 109.47356 * 293.96139 * 13 3 2 15 15 C 1.38265 * 119.94610 * 90.00103 * 14 13 3 16 16 C 1.38145 * 120.05514 * 180.02562 * 15 14 13 17 17 C 1.38737 * 119.94286 * 359.97438 * 16 15 14 18 18 O 1.35903 * 120.05539 * 180.02562 * 17 16 15 19 19 C 1.42898 * 117.00207 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47042 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47386 * 65.00160 * 20 19 18 22 22 C 1.42893 * 114.00092 * 179.97438 * 21 20 19 23 23 C 1.38733 * 119.88667 * 0.28140 * 17 16 15 24 24 C 1.38136 * 119.94742 * 359.46475 * 23 17 16 25 25 H 1.09008 * 109.46974 * 299.63001 * 1 2 3 26 26 H 1.09004 * 109.47292 * 59.62150 * 1 2 3 27 27 H 1.09000 * 109.47230 * 179.62813 * 1 2 3 28 28 H 1.09005 * 109.47002 * 240.00331 * 2 1 3 29 29 H 1.08995 * 109.47079 * 120.00395 * 2 1 3 30 30 H 1.08997 * 109.46997 * 280.36543 * 4 3 2 31 31 H 1.08999 * 109.46695 * 40.35775 * 4 3 2 32 32 H 0.97001 * 120.00007 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47029 * 173.95590 * 13 3 2 34 34 H 1.09003 * 109.46864 * 53.96058 * 13 3 2 35 35 H 1.07997 * 119.96852 * 0.02562 * 15 14 13 36 36 H 1.07991 * 120.02991 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.46922 * 300.00861 * 19 18 17 38 38 H 1.08999 * 109.46739 * 60.00534 * 19 18 17 39 39 H 1.09001 * 109.47000 * 185.00256 * 20 19 18 40 40 H 1.08998 * 109.47258 * 304.99808 * 20 19 18 41 41 H 1.09004 * 109.47285 * 300.00111 * 22 21 20 42 42 H 1.09002 * 109.47090 * 60.00041 * 22 21 20 43 43 H 1.08999 * 109.47117 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.02430 * 179.71515 * 23 17 16 45 45 H 1.08000 * 119.97394 * 180.22781 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7917 2.0241 -1.3028 5 6 1.8435 3.5218 -1.1437 6 1 2.1054 3.9547 -0.1895 7 6 1.5567 4.3393 -2.2162 8 7 1.6015 5.6464 -2.0771 9 14 1.1031 3.5906 -3.8664 10 1 -0.3680 3.4004 -3.9360 11 1 1.5371 4.4990 -4.9581 12 1 1.7797 2.2773 -4.0168 13 6 3.4395 1.4413 0.3728 14 6 3.6004 1.0040 1.8059 15 6 3.8141 -0.3299 2.1007 16 6 3.9613 -0.7333 3.4137 17 6 3.8952 0.2013 4.4368 18 8 4.0403 -0.1930 5.7293 19 6 3.9603 0.8234 6.7306 20 6 4.1463 0.1937 8.1124 21 8 5.4681 -0.3389 8.2192 22 6 5.7473 -0.9528 9.4790 23 6 3.6755 1.5383 4.1387 24 6 3.5341 1.9374 2.8239 25 1 -0.3633 0.5081 0.8934 26 1 -0.3634 0.5197 -0.8866 27 1 -0.3634 -1.0276 -0.0067 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.5637 1.7062 -2.0035 31 1 0.8129 1.7329 -1.6840 32 1 1.3993 6.2216 -2.8315 33 1 3.8042 2.4624 0.2613 34 1 4.0120 0.7782 -0.2759 35 1 3.8658 -1.0569 1.3037 36 1 4.1277 -1.7753 3.6434 37 1 4.7424 1.5634 6.5604 38 1 2.9849 1.3074 6.6798 39 1 3.9972 0.9526 8.8806 40 1 3.4198 -0.6075 8.2475 41 1 5.6316 -0.2174 10.2752 42 1 5.0540 -1.7778 9.6427 43 1 6.7693 -1.3319 9.4798 44 1 3.6190 2.2670 4.9338 45 1 3.3667 2.9786 2.5911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127668904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -52.315713 kcal Electronic energy + Delta-G solvation = -23113.236636 eV Core-core repulsion = 19710.500618 eV Total energy + Delta-G solvation = -3402.736019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10210 -38.48970 -37.68371 -36.25860 -32.55675 -31.71099 -30.77601 -30.54805 -29.55880 -27.16519 -26.66130 -24.49373 -23.65462 -22.47332 -21.82074 -20.88473 -19.61847 -18.25065 -17.12098 -16.83715 -16.28531 -15.92219 -15.45290 -15.32354 -14.96761 -14.93243 -14.31642 -13.96181 -13.69761 -13.56616 -13.23091 -13.20847 -12.82355 -12.49570 -12.42394 -12.14959 -11.90340 -11.75475 -11.54312 -11.40105 -11.06230 -10.96653 -10.76495 -10.72383 -10.54027 -10.39995 -10.06439 -10.02669 -9.79582 -9.28583 -8.73457 -8.53781 -7.87264 -7.30698 -6.02973 -3.99143 1.57073 1.68398 3.13329 3.29273 3.36979 3.38157 3.39052 3.97448 4.43838 4.57452 4.77090 4.89465 4.93494 4.94597 5.01561 5.04731 5.10377 5.14076 5.29864 5.31195 5.31636 5.33285 5.59432 5.64036 5.64210 5.78441 5.88252 6.04021 6.05481 6.23422 6.31111 6.41555 6.50052 6.55729 6.61632 6.73649 6.75018 6.84707 6.94062 6.98029 7.07683 7.52845 7.66635 7.96097 8.07688 8.69679 9.06636 9.59477 11.10327 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.002800 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.979082 B = 9999.200359 C =10501.666899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.520 5.520 4 C 0.160 3.840 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.100 3.900 14 C -0.097 4.097 15 C -0.080 4.080 16 C -0.155 4.155 17 C 0.118 3.882 18 O -0.312 6.312 19 C 0.061 3.939 20 C 0.063 3.937 21 O -0.384 6.384 22 C 0.031 3.969 23 C -0.209 4.209 24 C -0.055 4.055 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.019 0.981 29 H 0.068 0.932 30 H -0.012 1.012 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -13.201 18.658 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 N -0.245 5.245 4 C 0.034 3.966 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.027 4.027 14 C -0.098 4.098 15 C -0.099 4.099 16 C -0.173 4.173 17 C 0.073 3.927 18 O -0.226 6.226 19 C -0.014 4.014 20 C -0.014 4.014 21 O -0.303 6.303 22 C -0.066 4.066 23 C -0.228 4.228 24 C -0.073 4.073 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.005 0.995 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.141 0.859 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.958 -12.941 18.821 23.373 hybrid contribution -0.124 -0.474 -1.253 1.345 sum 4.834 -13.416 17.569 22.628 Atomic orbital electron populations 1.21744 0.95595 0.99970 1.02785 1.22158 0.96012 0.90962 0.99499 1.61997 1.15361 1.14280 1.32823 1.20228 0.95358 0.95954 0.85017 1.21035 1.46227 0.88219 0.98732 0.90183 1.24897 0.95299 0.94720 0.98487 1.69893 1.49935 1.02787 1.31437 0.86897 0.79197 0.79445 0.84425 1.20202 1.21246 1.19360 1.20950 0.89849 1.02028 0.89888 1.19920 1.00631 0.92919 0.96316 1.20869 0.98188 0.95611 0.95192 1.20276 1.07355 0.98789 0.90908 1.18931 0.97451 0.92980 0.83336 1.86073 1.87718 1.35859 1.12929 1.22786 1.01929 0.90727 0.86002 1.22588 0.85342 0.98241 0.95185 1.87981 1.30635 1.76591 1.35090 1.22756 1.01834 0.96609 0.85376 1.21197 1.09098 0.94503 0.98011 1.20933 0.95108 1.00221 0.91075 0.92159 0.92503 0.93556 0.96233 0.91325 0.99481 0.95457 0.92742 0.88818 0.95367 0.85901 0.85802 0.91112 0.90388 0.91178 0.92116 0.94096 0.93972 0.89510 0.85927 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.98 37.16 0.37 -2.02 16 2 C 0.04 0.74 5.52 -3.82 -0.02 0.72 16 3 N -0.52 -10.88 4.37 -237.52 -1.04 -11.92 16 4 C 0.16 3.88 3.66 -4.98 -0.02 3.86 16 5 C -0.50 -14.20 9.17 -34.44 -0.32 -14.52 16 6 H 0.08 2.45 7.90 -52.48 -0.41 2.03 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 9 Si 0.87 21.54 27.37 -169.99 -4.65 16.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.41 6.69 56.52 0.38 -6.04 16 13 C 0.10 1.90 4.94 -4.97 -0.02 1.88 16 14 C -0.10 -1.61 4.94 -104.60 -0.52 -2.12 16 15 C -0.08 -1.17 7.84 -39.61 -0.31 -1.48 16 16 C -0.15 -2.17 9.99 -39.43 -0.39 -2.57 16 17 C 0.12 1.68 6.69 -39.21 -0.26 1.42 16 18 O -0.31 -4.16 10.10 -24.29 -0.25 -4.40 16 19 C 0.06 0.60 5.12 37.15 0.19 0.79 16 20 C 0.06 0.52 6.32 37.15 0.23 0.76 16 21 O -0.38 -4.00 10.67 -40.08 -0.43 -4.42 16 22 C 0.03 0.21 11.01 101.05 1.11 1.32 16 23 C -0.21 -2.96 9.04 -39.44 -0.36 -3.32 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 29 H 0.07 1.11 5.14 -51.93 -0.27 0.84 16 30 H -0.01 -0.31 7.40 -51.93 -0.38 -0.69 16 31 H 0.03 0.66 5.39 -51.93 -0.28 0.38 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.09 1.95 7.26 -51.93 -0.38 1.57 16 34 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.12 1.60 7.73 -52.49 -0.41 1.19 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 38 H 0.08 0.64 7.65 -51.93 -0.40 0.25 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.12 1.44 6.30 -52.49 -0.33 1.11 16 45 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -32.29 363.22 -8.30 -40.60 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.39 Total: -0.76 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.79 Total: -14.70 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.27 Total: -38.66 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.67 Total: -8.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.65 Total: 16.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.29 -8.30 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127668904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.719 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds