Wall clock time and date at job start Tue Mar 31 2020 06:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47231 * 2 1 4 4 C 1.46896 * 111.00696 * 288.18713 * 3 2 1 5 5 C 1.50697 * 109.47678 * 160.35899 * 4 3 2 6 6 H 1.08003 * 119.99923 * 4.89768 * 5 4 3 7 7 C 1.37875 * 120.00151 * 184.89449 * 5 4 3 8 8 N 1.31518 * 119.99838 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00058 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46903 * 89.99680 * 9 7 5 11 11 H 1.48500 * 109.47090 * 209.99634 * 9 7 5 12 12 H 1.48497 * 109.47053 * 329.99914 * 9 7 5 13 13 C 1.46905 * 110.99855 * 164.22854 * 3 2 1 14 14 C 1.50697 * 109.47356 * 293.96139 * 13 3 2 15 15 C 1.38265 * 119.94610 * 90.00103 * 14 13 3 16 16 C 1.38145 * 120.05514 * 180.02562 * 15 14 13 17 17 C 1.38737 * 119.94286 * 359.97438 * 16 15 14 18 18 O 1.35903 * 120.05539 * 180.02562 * 17 16 15 19 19 C 1.42898 * 117.00207 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47042 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47386 * 65.00160 * 20 19 18 22 22 C 1.42893 * 114.00092 * 179.97438 * 21 20 19 23 23 C 1.38733 * 119.88667 * 0.28140 * 17 16 15 24 24 C 1.38136 * 119.94742 * 359.46475 * 23 17 16 25 25 H 1.09008 * 109.46974 * 299.63001 * 1 2 3 26 26 H 1.09004 * 109.47292 * 59.62150 * 1 2 3 27 27 H 1.09000 * 109.47230 * 179.62813 * 1 2 3 28 28 H 1.09005 * 109.47002 * 240.00331 * 2 1 3 29 29 H 1.08995 * 109.47079 * 120.00395 * 2 1 3 30 30 H 1.08997 * 109.46997 * 280.36543 * 4 3 2 31 31 H 1.08999 * 109.46695 * 40.35775 * 4 3 2 32 32 H 0.97001 * 120.00007 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47029 * 173.95590 * 13 3 2 34 34 H 1.09003 * 109.46864 * 53.96058 * 13 3 2 35 35 H 1.07997 * 119.96852 * 0.02562 * 15 14 13 36 36 H 1.07991 * 120.02991 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.46922 * 300.00861 * 19 18 17 38 38 H 1.08999 * 109.46739 * 60.00534 * 19 18 17 39 39 H 1.09001 * 109.47000 * 185.00256 * 20 19 18 40 40 H 1.08998 * 109.47258 * 304.99808 * 20 19 18 41 41 H 1.09004 * 109.47285 * 300.00111 * 22 21 20 42 42 H 1.09002 * 109.47090 * 60.00041 * 22 21 20 43 43 H 1.08999 * 109.47117 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.02430 * 179.71515 * 23 17 16 45 45 H 1.08000 * 119.97394 * 180.22781 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7917 2.0241 -1.3028 5 6 1.8435 3.5218 -1.1437 6 1 2.1054 3.9547 -0.1895 7 6 1.5567 4.3393 -2.2162 8 7 1.6015 5.6464 -2.0771 9 14 1.1031 3.5906 -3.8664 10 1 -0.3680 3.4004 -3.9360 11 1 1.5371 4.4990 -4.9581 12 1 1.7797 2.2773 -4.0168 13 6 3.4395 1.4413 0.3728 14 6 3.6004 1.0040 1.8059 15 6 3.8141 -0.3299 2.1007 16 6 3.9613 -0.7333 3.4137 17 6 3.8952 0.2013 4.4368 18 8 4.0403 -0.1930 5.7293 19 6 3.9603 0.8234 6.7306 20 6 4.1463 0.1937 8.1124 21 8 5.4681 -0.3389 8.2192 22 6 5.7473 -0.9528 9.4790 23 6 3.6755 1.5383 4.1387 24 6 3.5341 1.9374 2.8239 25 1 -0.3633 0.5081 0.8934 26 1 -0.3634 0.5197 -0.8866 27 1 -0.3634 -1.0276 -0.0067 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.5637 1.7062 -2.0035 31 1 0.8129 1.7329 -1.6840 32 1 1.3993 6.2216 -2.8315 33 1 3.8042 2.4624 0.2613 34 1 4.0120 0.7782 -0.2759 35 1 3.8658 -1.0569 1.3037 36 1 4.1277 -1.7753 3.6434 37 1 4.7424 1.5634 6.5604 38 1 2.9849 1.3074 6.6798 39 1 3.9972 0.9526 8.8806 40 1 3.4198 -0.6075 8.2475 41 1 5.6316 -0.2174 10.2752 42 1 5.0540 -1.7778 9.6427 43 1 6.7693 -1.3319 9.4798 44 1 3.6190 2.2670 4.9338 45 1 3.3667 2.9786 2.5911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127668904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:50 Heat of formation + Delta-G solvation = -73.366950 kcal Electronic energy + Delta-G solvation = -23114.149487 eV Core-core repulsion = 19710.500618 eV Total energy + Delta-G solvation = -3403.648869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17764 -39.55035 -38.63147 -37.58455 -34.69978 -32.81753 -31.95591 -31.72301 -30.94878 -28.83344 -27.25520 -25.88057 -24.67332 -24.04529 -23.06336 -22.04460 -21.19160 -19.25531 -18.97992 -17.80372 -17.22859 -16.91191 -16.75398 -16.54070 -16.13415 -15.86621 -15.67217 -15.60434 -15.13261 -14.87936 -14.55033 -14.39916 -14.26084 -13.82770 -13.53416 -13.32811 -13.15032 -12.93360 -12.75265 -12.62808 -12.43163 -12.26786 -12.22992 -12.08205 -11.90453 -11.76352 -11.64099 -11.47097 -11.38815 -10.74564 -10.66255 -9.88840 -9.09350 -8.88608 -8.25894 -6.27781 0.42394 0.48652 1.34992 1.36086 1.46894 2.23179 2.35593 2.75566 2.81129 3.07312 3.44085 3.81700 3.94796 3.99697 4.01641 4.11494 4.24768 4.30648 4.35926 4.38573 4.46706 4.49185 4.52938 4.56433 4.61821 4.69263 4.73193 4.76607 4.82754 4.87406 4.94869 4.99968 5.05860 5.13804 5.21111 5.34124 5.37252 5.43647 5.61361 5.79776 5.82846 6.05225 6.19314 6.42768 6.49117 6.70806 6.77869 7.35118 8.90901 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.002800 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.979082 B = 9999.200359 C =10501.666899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.538 5.538 4 C 0.171 3.829 5 C -0.509 4.509 6 H 0.036 0.964 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.944 3.056 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.252 1.252 13 C 0.107 3.893 14 C -0.114 4.114 15 C -0.074 4.074 16 C -0.155 4.155 17 C 0.119 3.881 18 O -0.322 6.322 19 C 0.051 3.949 20 C 0.063 3.937 21 O -0.418 6.418 22 C 0.025 3.975 23 C -0.208 4.208 24 C -0.072 4.072 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.087 0.913 30 H -0.014 1.014 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -15.941 19.282 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 N -0.263 5.263 4 C 0.044 3.956 5 C -0.547 4.547 6 H 0.055 0.945 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.176 1.176 13 C -0.021 4.021 14 C -0.115 4.115 15 C -0.092 4.092 16 C -0.173 4.173 17 C 0.073 3.927 18 O -0.236 6.236 19 C -0.024 4.024 20 C -0.014 4.014 21 O -0.338 6.338 22 C -0.070 4.070 23 C -0.226 4.226 24 C -0.091 4.091 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.004 0.996 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.161 0.839 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.626 -15.705 19.477 25.444 hybrid contribution 0.036 0.396 -1.234 1.297 sum 4.661 -15.309 18.243 24.267 Atomic orbital electron populations 1.21743 0.94857 1.01817 1.01429 1.22271 0.96611 0.88942 1.00820 1.61896 1.16808 1.16695 1.30852 1.19964 0.95375 0.93396 0.86820 1.21261 1.45577 0.90820 0.97082 0.94526 1.25827 0.95265 0.95043 1.02906 1.70052 1.51499 1.04513 1.32912 0.85755 0.79430 0.79127 0.78879 1.19040 1.20796 1.17602 1.20804 0.88907 1.00365 0.91988 1.19745 1.02816 0.94157 0.94741 1.20980 0.97327 0.94758 0.96162 1.20547 1.06438 0.99843 0.90512 1.19088 0.96545 0.92875 0.84169 1.86077 1.87400 1.37309 1.12785 1.23112 1.02869 0.90451 0.85991 1.22710 0.84769 0.99154 0.94719 1.87926 1.31648 1.77163 1.37025 1.22922 1.02380 0.97200 0.84540 1.21326 1.08451 0.95311 0.97540 1.20901 0.96459 0.99520 0.92247 0.93172 0.94155 0.90104 0.95206 0.89482 0.99637 0.94957 0.92549 0.92285 0.94268 0.83931 0.83709 0.91202 0.88724 0.88408 0.91608 0.92501 0.93219 0.89033 0.83945 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.98 71.98 0.72 -3.69 16 2 C 0.04 1.37 5.52 86.30 0.48 1.84 16 3 N -0.54 -22.57 4.37 -905.39 -3.96 -26.53 16 4 C 0.17 8.31 3.66 85.56 0.31 8.62 16 5 C -0.51 -29.79 9.17 25.60 0.23 -29.56 16 6 H 0.04 2.39 7.90 -2.91 -0.02 2.37 16 7 C 0.01 0.38 5.47 84.65 0.46 0.84 16 8 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 9 Si 0.94 44.52 27.37 68.60 1.88 46.40 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.25 -11.13 6.69 99.48 0.67 -10.46 16 13 C 0.11 4.13 4.94 85.56 0.42 4.55 16 14 C -0.11 -3.77 4.94 -19.85 -0.10 -3.87 16 15 C -0.07 -2.02 7.84 22.25 0.17 -1.84 16 16 C -0.15 -4.00 9.99 22.37 0.22 -3.77 16 17 C 0.12 3.20 6.69 22.51 0.15 3.35 16 18 O -0.32 -7.98 10.10 -87.82 -0.89 -8.87 16 19 C 0.05 0.90 5.12 71.98 0.37 1.27 16 20 C 0.06 0.90 6.32 71.98 0.45 1.35 16 21 O -0.42 -8.02 10.67 -144.34 -1.54 -9.56 16 22 C 0.03 0.29 11.01 113.37 1.25 1.54 16 23 C -0.21 -5.76 9.04 22.36 0.20 -5.56 16 24 C -0.07 -2.40 9.69 22.25 0.22 -2.18 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.04 1.38 6.52 -2.38 -0.02 1.36 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.03 0.94 8.06 -2.38 -0.02 0.92 16 29 H 0.09 2.58 5.14 -2.39 -0.01 2.57 16 30 H -0.01 -0.68 7.40 -2.39 -0.02 -0.70 16 31 H 0.03 1.54 5.39 -2.39 -0.01 1.53 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.06 2.64 7.26 -2.39 -0.02 2.62 16 34 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.14 3.28 7.73 -2.91 -0.02 3.26 16 36 H 0.15 3.11 8.06 -2.92 -0.02 3.09 16 37 H 0.07 1.26 7.67 -2.39 -0.02 1.24 16 38 H 0.09 1.36 7.65 -2.39 -0.02 1.34 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.14 3.24 6.30 -2.91 -0.02 3.22 16 45 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -71.54 363.22 2.27 -69.27 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.91 Total: 15.98 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 5.57 Total: -27.10 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -3.66 Total: -86.12 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -2.43 Total: -18.43 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -71.54 2.27 -69.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127668904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.095 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds