Wall clock time and date at job start Tue Mar 31 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47241 * 2 1 4 4 O 1.42907 * 109.47105 * 239.99809 * 2 1 3 5 5 C 1.53001 * 109.47239 * 120.00118 * 2 1 3 6 6 N 1.46899 * 109.47271 * 184.99461 * 5 2 1 7 7 C 1.46903 * 110.99705 * 66.04462 * 6 5 2 8 8 C 1.46896 * 111.00284 * 189.99801 * 6 5 2 9 9 C 1.50697 * 109.47382 * 170.00109 * 8 6 5 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 6 11 11 C 1.38255 * 120.11174 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05063 * 359.76900 * 11 10 9 13 13 C 1.38710 * 119.94702 * 0.48231 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.76528 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 6 26 26 H 1.09004 * 109.46873 * 299.99883 * 1 2 3 27 27 H 1.09003 * 109.47370 * 60.00008 * 1 2 3 28 28 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 29 29 H 0.96697 * 114.00018 * 300.00412 * 4 2 1 30 30 H 1.09004 * 109.47054 * 64.99459 * 5 2 1 31 31 H 1.08994 * 109.46894 * 304.99943 * 5 2 1 32 32 H 1.09003 * 109.47381 * 183.95359 * 7 6 5 33 33 H 1.08999 * 109.47080 * 303.95581 * 7 6 5 34 34 H 1.09004 * 109.46886 * 63.95499 * 7 6 5 35 35 H 1.09005 * 109.46944 * 50.00123 * 8 6 5 36 36 H 1.09002 * 109.47398 * 290.00564 * 8 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97457 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.02763 * 180.24929 * 12 11 10 40 40 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 41 41 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 43 43 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5040 -0.6177 1.3110 7 6 3.9251 0.7748 1.5151 8 6 4.0499 -1.4915 2.3581 9 6 5.5505 -1.5488 2.2328 10 6 6.1412 -2.5158 1.4403 11 6 7.5177 -2.5707 1.3228 12 6 8.3063 -1.6558 1.9937 13 6 7.7164 -0.6881 2.7935 14 8 8.4903 0.2099 3.4581 15 6 9.9050 0.0953 3.2923 16 6 10.6041 1.1835 4.1097 17 6 12.0959 1.0631 3.9344 18 1 12.5046 0.2882 3.3028 19 6 12.9392 1.9428 4.5795 20 7 12.4414 2.8867 5.3482 21 14 14.7885 1.7931 4.3627 22 1 15.1331 1.9532 2.9272 23 1 15.4669 2.8501 5.1550 24 1 15.2355 0.4574 4.8331 25 6 6.3348 -0.6349 2.9093 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7209 -1.5952 -1.2329 30 1 1.7515 -1.7715 1.2056 31 1 1.6054 -0.2618 2.1369 32 1 5.0132 0.8333 1.4869 33 1 3.5071 1.4000 0.7261 34 1 3.5674 1.1243 2.4836 35 1 3.6374 -2.4943 2.2461 36 1 3.7819 -1.0959 3.3378 37 1 5.5263 -3.2290 0.9115 38 1 7.9766 -3.3266 0.7030 39 1 9.3814 -1.6965 1.8985 40 1 10.2330 -0.8855 3.6367 41 1 10.1581 0.2138 2.2388 42 1 10.2760 2.1641 3.7649 43 1 10.3510 1.0656 5.1633 44 1 13.0346 3.5059 5.8018 45 1 5.8730 0.1201 3.5282 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130754107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:33 Heat of formation + Delta-G solvation = -72.708892 kcal Electronic energy + Delta-G solvation = -22828.917969 eV Core-core repulsion = 19425.297636 eV Total energy + Delta-G solvation = -3403.620333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92190 -38.79338 -37.41220 -35.97109 -33.37687 -32.05895 -30.91447 -30.66827 -29.20360 -27.49691 -26.79158 -25.01213 -23.28837 -22.25994 -21.60922 -21.19363 -20.07130 -17.57564 -16.74557 -16.46224 -16.21972 -15.86534 -15.60505 -15.43776 -15.24001 -14.78102 -14.74221 -14.44180 -13.98099 -13.43385 -13.00568 -12.97047 -12.67928 -12.60731 -12.38381 -12.30368 -11.98978 -11.88286 -11.78395 -11.36809 -11.29114 -11.25850 -10.98239 -10.84535 -10.73549 -10.45956 -10.23219 -9.83926 -9.65415 -9.30975 -8.76981 -8.44833 -8.41026 -7.80130 -6.10082 -4.14757 1.46198 1.73504 3.28993 3.33257 3.35083 3.55549 3.85298 4.07298 4.25627 4.39113 4.41302 4.70945 4.77034 4.83548 4.97448 5.03000 5.14081 5.15645 5.26189 5.30973 5.33066 5.37175 5.43212 5.49606 5.56165 5.65116 5.69078 5.74035 5.84721 5.97774 6.04748 6.08350 6.20837 6.56805 6.58365 6.72101 6.74967 6.80893 6.84397 7.03165 7.45511 7.51010 7.64291 7.81994 8.07778 8.24258 8.90585 9.49439 11.01454 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029789 B = 0.002423 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.724653 B =11552.477980 C =11999.819903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.099 0.901 4 O -0.549 6.549 5 C 0.022 3.978 6 N -0.526 5.526 7 C 0.016 3.984 8 C 0.097 3.903 9 C -0.045 4.045 10 C -0.148 4.148 11 C -0.081 4.081 12 C -0.211 4.211 13 C 0.144 3.856 14 O -0.317 6.317 15 C 0.066 3.934 16 C 0.026 3.974 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.156 4.156 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.370 0.630 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.264 0.736 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.113 -9.874 -8.826 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.045 3.955 3 H 0.117 0.883 4 O -0.354 6.354 5 C -0.106 4.106 6 N -0.249 5.249 7 C -0.132 4.132 8 C -0.030 4.030 9 C -0.046 4.046 10 C -0.167 4.167 11 C -0.099 4.099 12 C -0.230 4.230 13 C 0.097 3.903 14 O -0.230 6.230 15 C -0.008 4.008 16 C -0.011 4.011 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.175 4.175 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.217 0.783 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.647 -9.117 -9.125 26.063 hybrid contribution 0.643 -0.375 0.809 1.100 sum -22.004 -9.492 -8.315 25.366 Atomic orbital electron populations 1.22499 0.96425 1.02566 1.02859 1.21936 0.92001 0.97053 0.84508 0.88344 1.86643 1.77233 1.28565 1.42941 1.22905 0.88465 1.01304 0.97962 1.61929 1.08446 1.08178 1.46393 1.22562 1.02856 0.88358 0.99419 1.21030 0.91374 0.97688 0.92904 1.19309 0.93996 0.94921 0.96357 1.20730 0.94434 1.00328 1.01195 1.20888 0.93566 0.97636 0.97841 1.21386 1.00886 0.98430 1.02248 1.19136 0.91110 0.89011 0.91029 1.86163 1.20786 1.50709 1.65364 1.23319 0.74918 1.01800 1.00810 1.19115 0.93924 0.92691 0.95416 1.20934 0.90415 1.15548 1.29602 0.92412 1.24995 0.99236 0.95052 0.94932 1.69969 1.35397 1.17398 1.30025 0.86538 0.84663 0.77828 0.78294 1.20077 1.21121 1.20090 1.20265 0.90714 1.01879 1.04680 0.91668 0.91549 0.92273 0.78299 0.90515 0.94066 0.90181 0.91305 0.95638 0.90026 0.93946 0.86444 0.86194 0.85312 0.93164 0.93139 0.95425 0.95441 0.92655 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.10 0.79 3.55 -26.73 -0.09 0.69 16 3 H 0.10 0.84 6.26 -51.93 -0.33 0.51 16 4 O -0.55 -5.05 13.29 -35.23 -0.47 -5.51 16 5 C 0.02 0.17 4.60 -3.82 -0.02 0.15 16 6 N -0.53 -5.41 4.70 -244.37 -1.15 -6.56 16 7 C 0.02 0.17 8.95 60.07 0.54 0.71 16 8 C 0.10 1.00 5.12 -4.98 -0.03 0.98 16 9 C -0.05 -0.59 4.88 -104.65 -0.51 -1.10 16 10 C -0.15 -1.89 9.70 -39.56 -0.38 -2.27 16 11 C -0.08 -1.10 10.04 -39.60 -0.40 -1.50 16 12 C -0.21 -3.38 9.04 -39.43 -0.36 -3.74 16 13 C 0.14 2.56 6.69 -39.22 -0.26 2.30 16 14 O -0.32 -6.64 10.14 -19.43 -0.20 -6.84 16 15 C 0.07 1.43 4.68 37.16 0.17 1.60 16 16 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 17 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.16 -2.40 7.90 -39.43 -0.31 -2.71 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.37 2.08 9.05 45.56 0.41 2.49 16 30 H 0.08 0.49 7.93 -51.93 -0.41 0.08 16 31 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 33 H 0.07 0.69 6.21 -51.93 -0.32 0.37 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.71 7.87 -51.93 -0.41 0.31 16 36 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.04 6.30 -52.48 -0.33 1.71 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.12 1.81 8.03 -52.49 -0.42 1.39 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.71 367.19 -9.11 -40.82 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.69 Total: 0.56 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.85 Total: -18.49 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: -0.41 Total: -32.43 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.67 Total: -12.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.71 -9.11 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130754107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.888 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds