Wall clock time and date at job start Tue Mar 31 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47241 * 2 1 4 4 O 1.42907 * 109.47105 * 239.99809 * 2 1 3 5 5 C 1.53001 * 109.47239 * 120.00118 * 2 1 3 6 6 N 1.46899 * 109.47271 * 184.99461 * 5 2 1 7 7 C 1.46903 * 110.99705 * 66.04462 * 6 5 2 8 8 C 1.46896 * 111.00284 * 189.99801 * 6 5 2 9 9 C 1.50697 * 109.47382 * 170.00109 * 8 6 5 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 6 11 11 C 1.38255 * 120.11174 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05063 * 359.76900 * 11 10 9 13 13 C 1.38710 * 119.94702 * 0.48231 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.76528 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 6 26 26 H 1.09004 * 109.46873 * 299.99883 * 1 2 3 27 27 H 1.09003 * 109.47370 * 60.00008 * 1 2 3 28 28 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 29 29 H 0.96697 * 114.00018 * 300.00412 * 4 2 1 30 30 H 1.09004 * 109.47054 * 64.99459 * 5 2 1 31 31 H 1.08994 * 109.46894 * 304.99943 * 5 2 1 32 32 H 1.09003 * 109.47381 * 183.95359 * 7 6 5 33 33 H 1.08999 * 109.47080 * 303.95581 * 7 6 5 34 34 H 1.09004 * 109.46886 * 63.95499 * 7 6 5 35 35 H 1.09005 * 109.46944 * 50.00123 * 8 6 5 36 36 H 1.09002 * 109.47398 * 290.00564 * 8 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97457 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.02763 * 180.24929 * 12 11 10 40 40 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 41 41 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 43 43 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5040 -0.6177 1.3110 7 6 3.9251 0.7748 1.5151 8 6 4.0499 -1.4915 2.3581 9 6 5.5505 -1.5488 2.2328 10 6 6.1412 -2.5158 1.4403 11 6 7.5177 -2.5707 1.3228 12 6 8.3063 -1.6558 1.9937 13 6 7.7164 -0.6881 2.7935 14 8 8.4903 0.2099 3.4581 15 6 9.9050 0.0953 3.2923 16 6 10.6041 1.1835 4.1097 17 6 12.0959 1.0631 3.9344 18 1 12.5046 0.2882 3.3028 19 6 12.9392 1.9428 4.5795 20 7 12.4414 2.8867 5.3482 21 14 14.7885 1.7931 4.3627 22 1 15.1331 1.9532 2.9272 23 1 15.4669 2.8501 5.1550 24 1 15.2355 0.4574 4.8331 25 6 6.3348 -0.6349 2.9093 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7209 -1.5952 -1.2329 30 1 1.7515 -1.7715 1.2056 31 1 1.6054 -0.2618 2.1369 32 1 5.0132 0.8333 1.4869 33 1 3.5071 1.4000 0.7261 34 1 3.5674 1.1243 2.4836 35 1 3.6374 -2.4943 2.2461 36 1 3.7819 -1.0959 3.3378 37 1 5.5263 -3.2290 0.9115 38 1 7.9766 -3.3266 0.7030 39 1 9.3814 -1.6965 1.8985 40 1 10.2330 -0.8855 3.6367 41 1 10.1581 0.2138 2.2388 42 1 10.2760 2.1641 3.7649 43 1 10.3510 1.0656 5.1633 44 1 13.0346 3.5059 5.8018 45 1 5.8730 0.1201 3.5282 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130754107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:33 Heat of formation + Delta-G solvation = -94.585233 kcal Electronic energy + Delta-G solvation = -22829.866599 eV Core-core repulsion = 19425.297636 eV Total energy + Delta-G solvation = -3404.568963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14996 -39.66349 -38.52875 -36.83745 -35.47544 -32.89380 -32.58823 -31.56741 -30.65861 -28.32783 -27.61956 -26.89794 -24.29515 -23.41332 -23.10890 -21.96524 -21.40720 -19.08764 -18.13403 -17.40242 -17.15032 -17.03229 -16.91958 -16.82240 -16.47094 -16.21138 -15.62264 -15.48551 -14.88698 -14.35421 -14.33791 -14.29569 -14.19806 -13.87349 -13.38673 -13.12725 -13.03908 -12.86491 -12.73266 -12.66157 -12.59070 -12.54575 -12.47483 -12.26987 -11.88056 -11.60659 -11.58845 -11.53576 -11.40106 -10.86360 -10.62804 -9.84046 -9.22705 -9.08230 -8.27847 -6.41843 0.34296 0.55384 1.39945 1.44166 1.52157 2.26223 2.50121 2.67903 3.06290 3.14346 3.69094 3.75599 3.86818 3.91885 4.11329 4.19303 4.21660 4.24891 4.28383 4.32250 4.42037 4.45394 4.50361 4.57617 4.63735 4.71360 4.71862 4.75429 4.81857 4.90678 5.03849 5.11354 5.21264 5.29108 5.29881 5.43140 5.44575 5.53152 5.64527 5.67192 5.90322 6.01344 6.06130 6.12433 6.56738 6.72557 7.01533 7.28217 8.85105 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029789 B = 0.002423 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.724653 B =11552.477980 C =11999.819903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 H 0.082 0.918 4 O -0.573 6.573 5 C 0.024 3.976 6 N -0.536 5.536 7 C 0.019 3.981 8 C 0.099 3.901 9 C -0.042 4.042 10 C -0.139 4.139 11 C -0.079 4.079 12 C -0.223 4.223 13 C 0.105 3.895 14 O -0.343 6.343 15 C 0.086 3.914 16 C 0.029 3.971 17 C -0.547 4.547 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.977 3.023 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.163 4.163 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.385 0.615 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.126 0.874 40 H 0.059 0.941 41 H 0.058 0.942 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.087 -12.259 -10.192 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.100 0.900 4 O -0.380 6.380 5 C -0.103 4.103 6 N -0.259 5.259 7 C -0.129 4.129 8 C -0.028 4.028 9 C -0.042 4.042 10 C -0.157 4.157 11 C -0.097 4.097 12 C -0.242 4.242 13 C 0.059 3.941 14 O -0.258 6.258 15 C 0.011 3.989 16 C -0.008 4.008 17 C -0.585 4.585 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.188 1.188 25 C -0.182 4.182 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.234 0.766 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.655 -11.531 -10.505 28.335 hybrid contribution 0.770 0.325 1.187 1.451 sum -22.885 -11.206 -9.318 27.131 Atomic orbital electron populations 1.22415 0.94643 1.03567 1.02961 1.21927 0.93305 0.96137 0.84109 0.89995 1.86603 1.77817 1.29924 1.43653 1.22966 0.86552 1.02642 0.98155 1.61916 1.10339 1.07411 1.46277 1.22469 1.01176 0.89403 0.99882 1.21078 0.89389 0.99135 0.93164 1.19660 0.95542 0.93871 0.95150 1.21164 0.94478 1.00054 1.00044 1.21248 0.93953 0.97295 0.97236 1.21492 1.01145 0.98887 1.02703 1.19480 0.91716 0.89969 0.92893 1.86072 1.20131 1.52618 1.66958 1.22840 0.75813 1.00147 1.00069 1.18957 0.94567 0.92944 0.94365 1.21363 0.91191 1.16044 1.29897 0.91125 1.26067 1.05012 0.94419 0.94291 1.70119 1.37516 1.18351 1.31017 0.85320 0.77606 0.78287 0.78761 1.18841 1.20715 1.18767 1.20407 0.90014 1.02579 1.05200 0.90967 0.92054 0.90810 0.76627 0.88519 0.93323 0.92775 0.90931 0.95181 0.87437 0.93755 0.83243 0.83195 0.85653 0.92230 0.92400 0.98441 0.98346 0.92413 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.53 71.98 0.69 -0.83 16 2 C 0.10 1.39 3.55 30.59 0.11 1.50 16 3 H 0.08 1.33 6.26 -2.39 -0.01 1.32 16 4 O -0.57 -9.47 13.29 -148.98 -1.98 -11.45 16 5 C 0.02 0.31 4.60 86.30 0.40 0.70 16 6 N -0.54 -9.94 4.70 -927.04 -4.36 -14.30 16 7 C 0.02 0.40 8.95 127.69 1.14 1.55 16 8 C 0.10 1.80 5.12 85.56 0.44 2.24 16 9 C -0.04 -1.02 4.88 -19.88 -0.10 -1.12 16 10 C -0.14 -3.12 9.70 22.28 0.22 -2.90 16 11 C -0.08 -1.97 10.04 22.26 0.22 -1.75 16 12 C -0.22 -7.12 9.04 22.36 0.20 -6.92 16 13 C 0.10 3.83 6.69 22.50 0.15 3.98 16 14 O -0.34 -15.20 10.14 -92.43 -0.94 -16.13 16 15 C 0.09 3.89 4.68 71.98 0.34 4.23 16 16 C 0.03 1.62 5.34 29.85 0.16 1.78 16 17 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 18 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 21 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 25 C -0.16 -5.07 7.90 22.37 0.18 -4.89 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.38 3.38 9.05 -74.06 -0.67 2.71 16 30 H 0.10 0.85 7.93 -2.39 -0.02 0.83 16 31 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 32 H 0.05 1.43 6.17 -2.39 -0.01 1.42 16 33 H 0.07 1.46 6.21 -2.39 -0.01 1.45 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 1.42 7.87 -2.38 -0.02 1.40 16 36 H 0.04 0.80 8.06 -2.39 -0.02 0.78 16 37 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.15 2.78 8.06 -2.92 -0.02 2.75 16 39 H 0.13 3.98 6.30 -2.91 -0.02 3.96 16 40 H 0.06 2.54 7.67 -2.39 -0.02 2.53 16 41 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.12 3.67 8.03 -2.91 -0.02 3.64 16 Total: -1.00 -70.75 367.19 0.17 -70.59 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.30 Total: 15.47 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 4.83 Total: -33.11 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -4.07 Total: -71.32 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -2.92 Total: -27.58 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.75 0.17 -70.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130754107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.998 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds