Wall clock time and date at job start Tue Mar 31 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 O 1.42900 * 109.47301 * 119.99839 * 2 1 3 5 5 C 1.53001 * 109.46936 * 239.99618 * 2 1 3 6 6 N 1.46910 * 109.46715 * 177.03276 * 5 2 1 7 7 C 1.46898 * 110.99733 * 160.31021 * 6 5 2 8 8 C 1.46901 * 110.99762 * 284.26185 * 6 5 2 9 9 C 1.50707 * 109.46733 * 170.00153 * 8 6 5 10 10 C 1.38282 * 119.97383 * 270.02161 * 9 8 6 11 11 C 1.38240 * 120.11275 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05437 * 359.76712 * 11 10 9 13 13 C 1.38706 * 119.94142 * 0.48677 * 12 11 10 14 14 O 1.35906 * 120.05294 * 179.76706 * 13 12 11 15 15 C 1.42896 * 116.99877 * 359.72413 * 14 13 12 16 16 C 1.53008 * 109.46780 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46938 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00039 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00061 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.47112 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46734 * 120.00016 * 21 19 17 24 24 H 1.48500 * 109.46546 * 239.99842 * 21 19 17 25 25 C 1.38120 * 119.96820 * 90.00133 * 9 8 6 26 26 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46962 * 300.00155 * 1 2 3 28 28 H 1.08998 * 109.47251 * 60.00135 * 1 2 3 29 29 H 0.96702 * 113.99862 * 59.99357 * 4 2 1 30 30 H 1.08998 * 109.46920 * 57.03731 * 5 2 1 31 31 H 1.09001 * 109.47326 * 297.02721 * 5 2 1 32 32 H 1.09003 * 109.47270 * 189.84946 * 7 6 5 33 33 H 1.09000 * 109.47130 * 309.84960 * 7 6 5 34 34 H 1.09002 * 109.47362 * 69.84676 * 7 6 5 35 35 H 1.08997 * 109.47091 * 50.00785 * 8 6 5 36 36 H 1.08995 * 109.47197 * 289.99955 * 8 6 5 37 37 H 1.07998 * 119.94187 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.97120 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.02626 * 180.25360 * 12 11 10 40 40 H 1.08997 * 109.47178 * 299.99778 * 15 14 13 41 41 H 1.08996 * 109.47148 * 60.00259 * 15 14 13 42 42 H 1.08996 * 109.47308 * 300.00249 * 16 15 14 43 43 H 1.08996 * 109.47141 * 60.00166 * 16 15 14 44 44 H 0.96998 * 119.99890 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03128 * 0.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0399 -0.7213 -1.2492 6 7 3.5073 -0.6595 -1.2856 7 6 4.0561 -1.6979 -2.1678 8 6 3.9680 0.6746 -1.6926 9 6 5.4570 0.7772 -1.4838 10 6 5.9558 1.2268 -0.2750 11 6 7.3211 1.3214 -0.0801 12 6 8.1910 0.9622 -1.0918 13 6 7.6931 0.5160 -2.3070 14 8 8.5466 0.1666 -3.3053 15 6 9.9446 0.2895 -3.0361 16 6 10.7412 -0.1455 -4.2679 17 6 12.2156 -0.0165 -3.9839 18 1 12.5509 0.3404 -3.0213 19 6 13.1364 -0.3532 -4.9533 20 7 12.7282 -0.7873 -6.1257 21 14 14.9640 -0.1926 -4.6014 22 1 15.1594 0.3147 -3.2196 23 1 15.6129 -1.5214 -4.7379 24 1 15.5724 0.7570 -5.5675 25 6 6.3223 0.4215 -2.4999 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7209 -1.5952 1.2330 30 1 1.6338 -0.2391 -2.1384 31 1 1.7207 -1.7632 -1.2229 32 1 5.1380 -1.7456 -2.0436 33 1 3.6180 -2.6622 -1.9105 34 1 3.8197 -1.4564 -3.2041 35 1 3.4640 1.4319 -1.0921 36 1 3.7371 0.8331 -2.7459 37 1 5.2775 1.5036 0.5186 38 1 7.7082 1.6724 0.8650 39 1 9.2576 1.0325 -0.9376 40 1 10.1793 1.3274 -2.8000 41 1 10.2087 -0.3444 -2.1897 42 1 10.5066 -1.1833 -4.5046 43 1 10.4770 0.4888 -5.1141 44 1 13.3760 -1.0238 -6.8078 45 1 5.9322 0.0705 -3.4439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130754321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:35 Heat of formation + Delta-G solvation = -73.486649 kcal Electronic energy + Delta-G solvation = -22897.095554 eV Core-core repulsion = 19493.441495 eV Total energy + Delta-G solvation = -3403.654059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91223 -38.76550 -37.35260 -35.98792 -33.37597 -31.93054 -31.03147 -30.74465 -29.18523 -27.46999 -26.72846 -24.98493 -23.05386 -22.28786 -21.87474 -21.16987 -20.05681 -17.59943 -16.86439 -16.32511 -16.09464 -15.87219 -15.56645 -15.34917 -15.14361 -14.98734 -14.67185 -14.47565 -13.89259 -13.47699 -13.00122 -12.92067 -12.59973 -12.58893 -12.44269 -12.31964 -12.10495 -11.87700 -11.77332 -11.38152 -11.28583 -11.21171 -11.02069 -10.86180 -10.68575 -10.43627 -10.24334 -9.83971 -9.65082 -9.28240 -8.74767 -8.45586 -8.40731 -7.78405 -6.10566 -4.14980 1.48166 1.75802 3.26530 3.33573 3.37398 3.56532 3.86190 4.05919 4.25434 4.40848 4.45184 4.70886 4.77450 4.83719 4.94671 5.05109 5.16051 5.21274 5.25229 5.25948 5.33095 5.38509 5.44265 5.51087 5.58539 5.65254 5.70711 5.75935 5.86982 5.91541 6.05294 6.09333 6.22869 6.58812 6.59895 6.73607 6.75986 6.80949 6.86315 7.04982 7.46736 7.51583 7.64298 7.82330 8.08438 8.24278 8.90865 9.49354 11.01066 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037622 B = 0.002408 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.074914 B =11626.782037 C =12052.746323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.107 3.893 3 H 0.096 0.904 4 O -0.549 6.549 5 C 0.021 3.979 6 N -0.526 5.526 7 C 0.021 3.979 8 C 0.096 3.904 9 C -0.045 4.045 10 C -0.146 4.146 11 C -0.081 4.081 12 C -0.211 4.211 13 C 0.143 3.857 14 O -0.317 6.317 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.156 4.156 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.370 0.630 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 1.494 11.543 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.047 3.953 3 H 0.114 0.886 4 O -0.353 6.353 5 C -0.108 4.108 6 N -0.249 5.249 7 C -0.127 4.127 8 C -0.031 4.031 9 C -0.046 4.046 10 C -0.165 4.165 11 C -0.100 4.100 12 C -0.230 4.230 13 C 0.096 3.904 14 O -0.231 6.231 15 C -0.008 4.008 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.175 4.175 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.217 0.783 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.476 1.844 11.740 26.313 hybrid contribution 0.651 -0.292 -0.785 1.060 sum -22.825 1.552 10.955 25.366 Atomic orbital electron populations 1.22503 0.96522 1.02554 1.02828 1.21883 0.91835 0.96906 0.84636 0.88587 1.86636 1.77238 1.28527 1.42897 1.22929 0.88521 1.01380 0.97949 1.61919 1.07324 1.03637 1.52065 1.22503 1.02050 0.94341 0.93807 1.21077 0.92088 0.91054 0.98855 1.19301 0.93873 0.97911 0.93494 1.20756 0.95013 1.03883 0.96869 1.20891 0.93122 0.97820 0.98128 1.21384 1.00835 1.06637 0.94095 1.19131 0.90447 0.93006 0.87783 1.86162 1.18920 1.80601 1.37375 1.23314 0.75453 0.99908 1.02163 1.19128 0.93060 0.97887 0.91143 1.21015 0.90228 1.45109 0.99986 0.92300 1.25001 0.99392 0.94932 0.94947 1.69987 1.34345 1.43931 1.04526 0.86427 0.84696 0.77825 0.78424 1.19624 1.20832 1.20849 1.20258 0.90248 1.06777 1.00251 0.92304 0.91568 0.91687 0.78343 0.93855 0.90524 0.90313 0.91698 0.95572 0.89976 0.93932 0.86337 0.86201 0.85335 0.93175 0.93150 0.95425 0.95433 0.92773 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 9.53 37.16 0.35 -0.62 16 2 C 0.11 0.78 3.66 -26.73 -0.10 0.68 16 3 H 0.10 0.77 6.71 -51.93 -0.35 0.42 16 4 O -0.55 -4.95 13.26 -35.23 -0.47 -5.42 16 5 C 0.02 0.16 4.65 -3.82 -0.02 0.14 16 6 N -0.53 -5.38 4.60 -244.36 -1.12 -6.51 16 7 C 0.02 0.22 9.00 60.06 0.54 0.76 16 8 C 0.10 1.03 4.94 -4.97 -0.02 1.00 16 9 C -0.05 -0.60 4.88 -104.65 -0.51 -1.11 16 10 C -0.15 -1.94 9.70 -39.56 -0.38 -2.32 16 11 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 12 C -0.21 -3.42 9.04 -39.43 -0.36 -3.77 16 13 C 0.14 2.56 6.69 -39.22 -0.26 2.30 16 14 O -0.32 -6.66 10.14 -19.44 -0.20 -6.86 16 15 C 0.07 1.43 4.68 37.16 0.17 1.61 16 16 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 17 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.16 -2.41 8.05 -39.43 -0.32 -2.73 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.37 2.10 9.05 45.56 0.41 2.52 16 30 H 0.04 0.30 8.00 -51.93 -0.42 -0.11 16 31 H 0.08 0.50 7.74 -51.93 -0.40 0.10 16 32 H 0.08 0.98 6.56 -51.93 -0.34 0.64 16 33 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 34 H 0.03 0.26 8.06 -51.93 -0.42 -0.16 16 35 H 0.08 0.78 6.53 -51.93 -0.34 0.44 16 36 H 0.04 0.43 8.00 -51.93 -0.42 0.02 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.12 1.81 8.03 -52.49 -0.42 1.38 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -31.68 367.93 -9.11 -40.79 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.72 Total: 0.49 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.86 Total: -18.55 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: -0.39 Total: -32.36 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.66 Total: -12.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.68 -9.11 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130754321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.695 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds