Wall clock time and date at job start Tue Mar 31 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 O 1.42900 * 109.47301 * 119.99839 * 2 1 3 5 5 C 1.53001 * 109.46936 * 239.99618 * 2 1 3 6 6 N 1.46910 * 109.46715 * 177.03276 * 5 2 1 7 7 C 1.46898 * 110.99733 * 160.31021 * 6 5 2 8 8 C 1.46901 * 110.99762 * 284.26185 * 6 5 2 9 9 C 1.50707 * 109.46733 * 170.00153 * 8 6 5 10 10 C 1.38282 * 119.97383 * 270.02161 * 9 8 6 11 11 C 1.38240 * 120.11275 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05437 * 359.76712 * 11 10 9 13 13 C 1.38706 * 119.94142 * 0.48677 * 12 11 10 14 14 O 1.35906 * 120.05294 * 179.76706 * 13 12 11 15 15 C 1.42896 * 116.99877 * 359.72413 * 14 13 12 16 16 C 1.53008 * 109.46780 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46938 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00039 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00061 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.47112 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46734 * 120.00016 * 21 19 17 24 24 H 1.48500 * 109.46546 * 239.99842 * 21 19 17 25 25 C 1.38120 * 119.96820 * 90.00133 * 9 8 6 26 26 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46962 * 300.00155 * 1 2 3 28 28 H 1.08998 * 109.47251 * 60.00135 * 1 2 3 29 29 H 0.96702 * 113.99862 * 59.99357 * 4 2 1 30 30 H 1.08998 * 109.46920 * 57.03731 * 5 2 1 31 31 H 1.09001 * 109.47326 * 297.02721 * 5 2 1 32 32 H 1.09003 * 109.47270 * 189.84946 * 7 6 5 33 33 H 1.09000 * 109.47130 * 309.84960 * 7 6 5 34 34 H 1.09002 * 109.47362 * 69.84676 * 7 6 5 35 35 H 1.08997 * 109.47091 * 50.00785 * 8 6 5 36 36 H 1.08995 * 109.47197 * 289.99955 * 8 6 5 37 37 H 1.07998 * 119.94187 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.97120 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.02626 * 180.25360 * 12 11 10 40 40 H 1.08997 * 109.47178 * 299.99778 * 15 14 13 41 41 H 1.08996 * 109.47148 * 60.00259 * 15 14 13 42 42 H 1.08996 * 109.47308 * 300.00249 * 16 15 14 43 43 H 1.08996 * 109.47141 * 60.00166 * 16 15 14 44 44 H 0.96998 * 119.99890 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03128 * 0.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0399 -0.7213 -1.2492 6 7 3.5073 -0.6595 -1.2856 7 6 4.0561 -1.6979 -2.1678 8 6 3.9680 0.6746 -1.6926 9 6 5.4570 0.7772 -1.4838 10 6 5.9558 1.2268 -0.2750 11 6 7.3211 1.3214 -0.0801 12 6 8.1910 0.9622 -1.0918 13 6 7.6931 0.5160 -2.3070 14 8 8.5466 0.1666 -3.3053 15 6 9.9446 0.2895 -3.0361 16 6 10.7412 -0.1455 -4.2679 17 6 12.2156 -0.0165 -3.9839 18 1 12.5509 0.3404 -3.0213 19 6 13.1364 -0.3532 -4.9533 20 7 12.7282 -0.7873 -6.1257 21 14 14.9640 -0.1926 -4.6014 22 1 15.1594 0.3147 -3.2196 23 1 15.6129 -1.5214 -4.7379 24 1 15.5724 0.7570 -5.5675 25 6 6.3223 0.4215 -2.4999 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7209 -1.5952 1.2330 30 1 1.6338 -0.2391 -2.1384 31 1 1.7207 -1.7632 -1.2229 32 1 5.1380 -1.7456 -2.0436 33 1 3.6180 -2.6622 -1.9105 34 1 3.8197 -1.4564 -3.2041 35 1 3.4640 1.4319 -1.0921 36 1 3.7371 0.8331 -2.7459 37 1 5.2775 1.5036 0.5186 38 1 7.7082 1.6724 0.8650 39 1 9.2576 1.0325 -0.9376 40 1 10.1793 1.3274 -2.8000 41 1 10.2087 -0.3444 -2.1897 42 1 10.5066 -1.1833 -4.5046 43 1 10.4770 0.4888 -5.1141 44 1 13.3760 -1.0238 -6.8078 45 1 5.9322 0.0705 -3.4439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130754321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:34 Heat of formation + Delta-G solvation = -95.069979 kcal Electronic energy + Delta-G solvation = -22898.031478 eV Core-core repulsion = 19493.441495 eV Total energy + Delta-G solvation = -3404.589983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15633 -39.65339 -38.46229 -36.84509 -35.47535 -32.78086 -32.57653 -31.76698 -30.66437 -28.23828 -27.61575 -26.88233 -24.07427 -23.44786 -23.14080 -22.20244 -21.34327 -19.10942 -18.15347 -17.50615 -17.05669 -16.95246 -16.92885 -16.73593 -16.46311 -16.03865 -15.73706 -15.53372 -14.79208 -14.42287 -14.35523 -14.31693 -14.10127 -13.87520 -13.36694 -13.14676 -13.01294 -12.94050 -12.76001 -12.65728 -12.59533 -12.55291 -12.42989 -12.30607 -11.83081 -11.64897 -11.56990 -11.53131 -11.37475 -10.84650 -10.64180 -9.84034 -9.21827 -9.09026 -8.28140 -6.41774 0.33820 0.54620 1.40141 1.41147 1.54768 2.26004 2.49899 2.68308 3.06228 3.11763 3.71909 3.76383 3.88881 3.90696 4.07584 4.19044 4.24520 4.25421 4.30560 4.32871 4.42528 4.45268 4.54292 4.58467 4.61697 4.67684 4.72346 4.78861 4.80185 4.92869 5.05469 5.10951 5.21719 5.30296 5.31017 5.42581 5.45037 5.52400 5.64537 5.67403 5.89362 6.01784 6.06461 6.12617 6.56545 6.73067 7.01750 7.28341 8.85228 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037622 B = 0.002408 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.074914 B =11626.782037 C =12052.746323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 H 0.088 0.912 4 O -0.572 6.572 5 C 0.023 3.977 6 N -0.536 5.536 7 C 0.023 3.977 8 C 0.098 3.902 9 C -0.040 4.040 10 C -0.140 4.140 11 C -0.079 4.079 12 C -0.222 4.222 13 C 0.106 3.894 14 O -0.342 6.342 15 C 0.085 3.915 16 C 0.028 3.972 17 C -0.545 4.545 18 H 0.070 0.930 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.977 3.023 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.161 4.161 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.383 0.617 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.059 0.941 41 H 0.058 0.942 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.991 2.102 13.570 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.049 3.951 3 H 0.106 0.894 4 O -0.378 6.378 5 C -0.105 4.105 6 N -0.260 5.260 7 C -0.125 4.125 8 C -0.029 4.029 9 C -0.041 4.041 10 C -0.158 4.158 11 C -0.097 4.097 12 C -0.241 4.241 13 C 0.061 3.939 14 O -0.257 6.257 15 C 0.011 3.989 16 C -0.009 4.009 17 C -0.583 4.583 18 H 0.088 0.912 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.800 3.200 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.180 4.180 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.231 0.769 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.544 2.451 13.786 28.257 hybrid contribution 0.795 -0.492 -1.371 1.659 sum -23.748 1.958 12.416 26.869 Atomic orbital electron populations 1.22425 0.94879 1.03329 1.03082 1.21895 0.93038 0.96242 0.83920 0.89392 1.86591 1.77822 1.29739 1.43662 1.22991 0.86625 1.02397 0.98508 1.61898 1.09162 1.03054 1.51893 1.22438 1.00536 0.95351 0.94141 1.21100 0.90225 0.92001 0.99571 1.19621 0.95212 0.96429 0.92841 1.21117 0.95213 1.02342 0.97175 1.21222 0.93171 0.96776 0.98509 1.21482 1.01262 1.07195 0.94163 1.19461 0.90808 0.95543 0.88085 1.86074 1.18456 1.81928 1.39215 1.22846 0.76110 1.00271 0.99676 1.18968 0.93986 0.95546 0.92383 1.21422 0.91020 1.45211 1.00628 0.91152 1.26062 1.04985 0.94220 0.94553 1.70127 1.36372 1.44803 1.05706 0.85219 0.77791 0.78041 0.78900 1.18145 1.20181 1.20189 1.20384 0.89634 1.06950 1.01024 0.91303 0.91884 0.90839 0.76903 0.92919 0.89347 0.92947 0.90280 0.95383 0.88281 0.93554 0.83931 0.83309 0.85554 0.92273 0.92341 0.98352 0.98325 0.92423 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.53 71.98 0.69 -0.73 16 2 C 0.11 1.32 3.66 30.59 0.11 1.43 16 3 H 0.09 1.20 6.71 -2.39 -0.02 1.18 16 4 O -0.57 -9.09 13.26 -148.98 -1.97 -11.07 16 5 C 0.02 0.28 4.65 86.30 0.40 0.68 16 6 N -0.54 -9.98 4.60 -927.02 -4.27 -14.24 16 7 C 0.02 0.47 9.00 127.69 1.15 1.62 16 8 C 0.10 1.90 4.94 85.56 0.42 2.33 16 9 C -0.04 -1.03 4.88 -19.88 -0.10 -1.12 16 10 C -0.14 -3.37 9.70 22.28 0.22 -3.16 16 11 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 12 C -0.22 -7.14 9.04 22.37 0.20 -6.94 16 13 C 0.11 3.89 6.69 22.51 0.15 4.04 16 14 O -0.34 -15.07 10.14 -92.49 -0.94 -16.01 16 15 C 0.09 3.86 4.68 71.98 0.34 4.20 16 16 C 0.03 1.58 5.34 29.85 0.16 1.74 16 17 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 18 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 21 Si 0.98 43.92 29.54 68.60 2.03 45.94 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 C -0.16 -5.03 8.05 22.37 0.18 -4.85 16 26 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.38 3.57 9.05 -74.06 -0.67 2.90 16 30 H 0.05 0.59 8.00 -2.39 -0.02 0.57 16 31 H 0.09 0.92 7.74 -2.39 -0.02 0.90 16 32 H 0.05 1.32 6.56 -2.39 -0.02 1.30 16 33 H 0.08 1.31 7.83 -2.39 -0.02 1.29 16 34 H 0.03 0.53 8.06 -2.39 -0.02 0.51 16 35 H 0.10 1.60 6.53 -2.39 -0.02 1.58 16 36 H 0.05 0.87 8.00 -2.39 -0.02 0.85 16 37 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.13 4.02 6.30 -2.91 -0.02 4.01 16 40 H 0.06 2.52 7.67 -2.39 -0.02 2.50 16 41 H 0.06 2.50 7.65 -2.39 -0.02 2.49 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.12 3.70 8.03 -2.91 -0.02 3.67 16 Total: -1.00 -69.73 367.93 0.27 -69.46 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.29 Total: 15.80 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 4.84 Total: -33.06 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -3.98 Total: -71.07 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -2.91 Total: -27.07 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.73 0.27 -69.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130754321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.607 kcal (2) G-P(sol) polarization free energy of solvation -69.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds