Wall clock time and date at job start Tue Mar 31 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00009 * 2 1 4 4 C 1.50700 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.34522 * 125.78690 * 90.00045 * 4 3 2 6 6 C 1.41379 * 106.84137 * 179.97438 * 5 4 3 7 7 C 1.34516 * 106.84152 * 0.02562 * 6 5 4 8 8 C 1.50695 * 125.79288 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.87877 * 7.23251 * 8 7 6 10 10 C 1.54322 * 109.88935 * 246.20582 * 8 7 6 11 11 C 1.55559 * 102.82780 * 218.17726 * 10 8 7 12 12 C 1.54913 * 101.66775 * 35.68198 * 11 10 8 13 13 N 1.47438 * 109.89051 * 128.26672 * 8 7 6 14 14 C 1.46900 * 111.00031 * 356.30884 * 13 8 7 15 15 C 1.53002 * 109.47294 * 195.33044 * 14 13 8 16 16 C 1.52998 * 109.46925 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46960 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00325 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99673 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00451 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47171 * 89.99933 * 21 19 17 23 23 H 1.48499 * 109.47440 * 210.00089 * 21 19 17 24 24 H 1.48501 * 109.46789 * 330.00121 * 21 19 17 25 25 O 1.34306 * 125.79346 * 270.27167 * 4 3 2 26 26 H 1.09001 * 109.46709 * 59.99777 * 1 2 3 27 27 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47257 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.47553 * 59.99943 * 3 2 1 30 30 H 1.08998 * 109.47347 * 299.99939 * 3 2 1 31 31 H 1.07996 * 126.57620 * 359.94918 * 5 4 3 32 32 H 1.07998 * 126.58310 * 179.97438 * 6 5 4 33 33 H 1.08999 * 110.70324 * 336.52322 * 10 8 7 34 34 H 1.08991 * 110.71173 * 99.76631 * 10 8 7 35 35 H 1.08993 * 111.01549 * 277.57389 * 11 10 8 36 36 H 1.08999 * 110.98258 * 153.77749 * 11 10 8 37 37 H 1.08998 * 110.37580 * 204.06114 * 12 11 10 38 38 H 1.09007 * 110.46823 * 81.77137 * 12 11 10 39 39 H 1.08997 * 109.47218 * 315.33448 * 14 13 8 40 40 H 1.09000 * 109.46691 * 75.32840 * 14 13 8 41 41 H 1.09000 * 109.46814 * 300.00333 * 15 14 13 42 42 H 1.09003 * 109.46766 * 59.99886 * 15 14 13 43 43 H 1.09004 * 109.47069 * 299.99561 * 16 15 14 44 44 H 1.08994 * 109.47410 * 60.00008 * 16 15 14 45 45 H 0.97000 * 120.00504 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2972 1.1241 -1.0903 6 6 5.6301 1.0192 -0.6307 7 6 5.5803 1.0231 0.7135 8 6 6.7653 0.9292 1.6397 9 1 7.6900 0.9855 1.0653 10 6 6.7147 -0.3988 2.4241 11 6 7.2189 0.0149 3.8364 12 6 6.6212 1.4370 3.9783 13 7 6.7196 2.0248 2.6253 14 6 5.5902 2.9256 2.3592 15 6 5.7849 4.2304 3.1341 16 6 4.6083 5.1684 2.8574 17 6 4.8004 6.4538 3.6202 18 1 5.6741 6.5881 4.2407 19 6 3.8603 7.4580 3.5269 20 7 2.7961 7.2943 2.7717 21 14 4.0980 9.0510 4.4729 22 1 4.8507 10.0175 3.6336 23 1 2.7724 9.6237 4.8192 24 1 4.8600 8.7782 5.7180 25 8 4.2947 1.1194 1.0903 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.9713 1.1490 -2.1196 32 1 6.5179 0.9485 -1.2416 33 1 5.6941 -0.7782 2.4740 34 1 7.3800 -1.1367 1.9761 35 1 8.3080 0.0441 3.8696 36 1 6.8247 -0.6526 4.6026 37 1 7.2020 2.0235 4.6901 38 1 5.5791 1.3827 4.2936 39 1 5.5408 3.1409 1.2918 40 1 4.6628 2.4492 2.6770 41 1 5.8343 4.0151 4.2015 42 1 6.7124 4.7068 2.8163 43 1 4.5586 5.3837 1.7900 44 1 3.6811 4.6918 3.1755 45 1 2.1348 8.0008 2.7056 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131117760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:02 Heat of formation + Delta-G solvation = -32.181769 kcal Electronic energy + Delta-G solvation = -24156.704147 eV Core-core repulsion = 20754.841202 eV Total energy + Delta-G solvation = -3401.862945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.65986 -38.91678 -37.87854 -34.31364 -32.99632 -32.36593 -31.70058 -30.02534 -29.04756 -26.63082 -26.10740 -24.88246 -23.06711 -21.75866 -21.35853 -21.07034 -19.88875 -19.59901 -16.94791 -16.77685 -16.24928 -15.94793 -15.81060 -15.62983 -15.32431 -14.63634 -14.41535 -14.12470 -13.75922 -13.33278 -13.02862 -12.81208 -12.72117 -12.60578 -12.33069 -12.05124 -11.93075 -11.54984 -11.42003 -11.29302 -11.17498 -11.00595 -10.84316 -10.64893 -10.48433 -10.43152 -9.89513 -9.77765 -9.56702 -9.28145 -9.01760 -8.46895 -8.30472 -7.96261 -5.96047 -3.97580 1.69397 2.62520 2.88940 3.34453 3.40186 3.44164 3.88685 4.22165 4.50054 4.53228 4.63828 4.75003 4.84714 5.08254 5.10537 5.16690 5.18858 5.28207 5.30684 5.39818 5.41719 5.49370 5.51532 5.73591 5.75728 5.80016 5.83809 5.88550 6.01771 6.07798 6.09138 6.19724 6.23365 6.46464 6.59834 6.74598 6.82023 6.90821 7.13567 7.24089 7.30698 7.41978 7.73651 7.89272 8.05143 8.48863 9.09553 9.66010 11.15556 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.004725 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.134296 B = 5924.284918 C = 7718.291532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.141 3.859 4 C -0.018 4.018 5 C -0.184 4.184 6 C -0.210 4.210 7 C -0.004 4.004 8 C 0.149 3.851 9 H 0.113 0.887 10 C -0.136 4.136 11 C -0.128 4.128 12 C 0.040 3.960 13 N -0.520 5.520 14 C 0.052 3.948 15 C -0.102 4.102 16 C 0.024 3.976 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 O -0.160 6.160 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.014 0.986 44 H 0.012 0.988 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -17.889 -5.527 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.065 3.935 4 C -0.068 4.068 5 C -0.203 4.203 6 C -0.230 4.230 7 C -0.056 4.056 8 C 0.041 3.959 9 H 0.130 0.870 10 C -0.174 4.174 11 C -0.166 4.166 12 C -0.087 4.087 13 N -0.243 5.243 14 C -0.075 4.075 15 C -0.140 4.140 16 C -0.014 4.014 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 O -0.056 6.056 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.414 -17.645 -5.306 18.583 hybrid contribution -0.941 0.796 0.182 1.246 sum 1.473 -16.848 -5.124 17.672 Atomic orbital electron populations 1.22777 0.80386 1.02892 1.00480 1.87940 1.20042 1.27264 1.95569 1.20681 0.84696 0.85304 1.02794 1.21833 0.92507 1.07806 0.84643 1.21524 0.92743 1.06875 0.99166 1.21516 0.98135 1.09676 0.93692 1.22844 0.83540 1.04318 0.94898 1.21360 0.91523 0.91560 0.91466 0.86951 1.22944 1.02206 0.96470 0.95799 1.22791 1.01161 0.96440 0.96209 1.23128 1.00123 0.93941 0.91539 1.63940 1.44300 1.14795 1.01310 1.22677 0.89993 0.94135 1.00685 1.21611 1.00984 0.93301 0.98080 1.19047 0.92265 0.93200 0.96866 1.21263 1.06479 1.00070 1.27607 0.92681 1.25018 0.95264 0.98620 0.95582 1.69969 1.10776 1.33483 1.39494 0.86606 0.77339 0.83788 0.80354 1.20668 1.21289 1.19870 1.84157 1.16424 1.70551 1.34494 0.93758 0.89468 0.93566 0.90913 0.89879 0.83535 0.83441 0.90967 0.90371 0.90513 0.90800 0.89825 0.93252 0.91442 0.93881 0.93582 0.92727 0.96802 0.96966 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.18 10.69 -35.23 -0.38 -5.56 16 3 C 0.14 1.89 6.47 36.01 0.23 2.13 16 4 C -0.02 -0.28 6.95 -35.62 -0.25 -0.52 16 5 C -0.18 -2.61 10.81 -39.70 -0.43 -3.03 16 6 C -0.21 -2.95 10.79 -39.70 -0.43 -3.37 16 7 C 0.00 -0.07 3.83 -35.63 -0.14 -0.20 16 8 C 0.15 2.03 3.87 -67.88 -0.26 1.77 16 9 H 0.11 1.35 8.12 -51.93 -0.42 0.93 16 10 C -0.14 -1.54 6.49 -24.68 -0.16 -1.70 16 11 C -0.13 -1.39 7.09 -24.36 -0.17 -1.56 16 12 C 0.04 0.57 6.05 -2.30 -0.01 0.56 16 13 N -0.52 -8.33 5.12 -224.72 -1.15 -9.48 16 14 C 0.05 1.00 3.44 -3.82 -0.01 0.98 16 15 C -0.10 -2.26 5.26 -26.73 -0.14 -2.40 16 16 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 17 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 18 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 O -0.16 -2.73 8.03 5.69 0.05 -2.68 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.75 7.53 -51.92 -0.39 0.36 16 39 H 0.07 1.38 6.54 -51.93 -0.34 1.04 16 40 H 0.04 0.87 6.16 -51.93 -0.32 0.55 16 41 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -32.85 363.33 -9.24 -42.09 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.74 Total: -0.89 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.21 Total: -19.30 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.42 Total: -36.19 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.33 Total: -8.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.85 -9.24 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131117760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.908 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds