Wall clock time and date at job start Tue Mar 31 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00009 * 2 1 4 4 C 1.50700 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.34522 * 125.78690 * 90.00045 * 4 3 2 6 6 C 1.41379 * 106.84137 * 179.97438 * 5 4 3 7 7 C 1.34516 * 106.84152 * 0.02562 * 6 5 4 8 8 C 1.50695 * 125.79288 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.87877 * 7.23251 * 8 7 6 10 10 C 1.54322 * 109.88935 * 246.20582 * 8 7 6 11 11 C 1.55559 * 102.82780 * 218.17726 * 10 8 7 12 12 C 1.54913 * 101.66775 * 35.68198 * 11 10 8 13 13 N 1.47438 * 109.89051 * 128.26672 * 8 7 6 14 14 C 1.46900 * 111.00031 * 356.30884 * 13 8 7 15 15 C 1.53002 * 109.47294 * 195.33044 * 14 13 8 16 16 C 1.52998 * 109.46925 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46960 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00325 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99673 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00451 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47171 * 89.99933 * 21 19 17 23 23 H 1.48499 * 109.47440 * 210.00089 * 21 19 17 24 24 H 1.48501 * 109.46789 * 330.00121 * 21 19 17 25 25 O 1.34306 * 125.79346 * 270.27167 * 4 3 2 26 26 H 1.09001 * 109.46709 * 59.99777 * 1 2 3 27 27 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47257 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.47553 * 59.99943 * 3 2 1 30 30 H 1.08998 * 109.47347 * 299.99939 * 3 2 1 31 31 H 1.07996 * 126.57620 * 359.94918 * 5 4 3 32 32 H 1.07998 * 126.58310 * 179.97438 * 6 5 4 33 33 H 1.08999 * 110.70324 * 336.52322 * 10 8 7 34 34 H 1.08991 * 110.71173 * 99.76631 * 10 8 7 35 35 H 1.08993 * 111.01549 * 277.57389 * 11 10 8 36 36 H 1.08999 * 110.98258 * 153.77749 * 11 10 8 37 37 H 1.08998 * 110.37580 * 204.06114 * 12 11 10 38 38 H 1.09007 * 110.46823 * 81.77137 * 12 11 10 39 39 H 1.08997 * 109.47218 * 315.33448 * 14 13 8 40 40 H 1.09000 * 109.46691 * 75.32840 * 14 13 8 41 41 H 1.09000 * 109.46814 * 300.00333 * 15 14 13 42 42 H 1.09003 * 109.46766 * 59.99886 * 15 14 13 43 43 H 1.09004 * 109.47069 * 299.99561 * 16 15 14 44 44 H 1.08994 * 109.47410 * 60.00008 * 16 15 14 45 45 H 0.97000 * 120.00504 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2972 1.1241 -1.0903 6 6 5.6301 1.0192 -0.6307 7 6 5.5803 1.0231 0.7135 8 6 6.7653 0.9292 1.6397 9 1 7.6900 0.9855 1.0653 10 6 6.7147 -0.3988 2.4241 11 6 7.2189 0.0149 3.8364 12 6 6.6212 1.4370 3.9783 13 7 6.7196 2.0248 2.6253 14 6 5.5902 2.9256 2.3592 15 6 5.7849 4.2304 3.1341 16 6 4.6083 5.1684 2.8574 17 6 4.8004 6.4538 3.6202 18 1 5.6741 6.5881 4.2407 19 6 3.8603 7.4580 3.5269 20 7 2.7961 7.2943 2.7717 21 14 4.0980 9.0510 4.4729 22 1 4.8507 10.0175 3.6336 23 1 2.7724 9.6237 4.8192 24 1 4.8600 8.7782 5.7180 25 8 4.2947 1.1194 1.0903 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.9713 1.1490 -2.1196 32 1 6.5179 0.9485 -1.2416 33 1 5.6941 -0.7782 2.4740 34 1 7.3800 -1.1367 1.9761 35 1 8.3080 0.0441 3.8696 36 1 6.8247 -0.6526 4.6026 37 1 7.2020 2.0235 4.6901 38 1 5.5791 1.3827 4.2936 39 1 5.5408 3.1409 1.2918 40 1 4.6628 2.4492 2.6770 41 1 5.8343 4.0151 4.2015 42 1 6.7124 4.7068 2.8163 43 1 4.5586 5.3837 1.7900 44 1 3.6811 4.6918 3.1755 45 1 2.1348 8.0008 2.7056 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131117760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:02 Heat of formation + Delta-G solvation = -53.046708 kcal Electronic energy + Delta-G solvation = -24157.608919 eV Core-core repulsion = 20754.841202 eV Total energy + Delta-G solvation = -3402.767717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.80293 -40.08381 -38.85191 -36.21086 -34.34691 -34.04380 -32.77305 -31.66110 -30.07859 -27.99460 -27.50931 -25.91153 -24.86864 -22.94810 -22.58263 -22.30617 -21.45716 -20.80674 -18.58208 -17.95277 -17.78322 -17.02168 -16.92199 -16.62340 -16.57879 -16.42838 -16.12476 -15.35231 -14.77857 -14.57566 -14.43800 -14.21113 -14.05013 -13.84055 -13.57919 -13.49048 -13.19703 -12.93905 -12.87161 -12.60603 -12.44931 -12.38135 -12.24628 -12.18318 -12.02838 -11.71076 -11.48024 -11.41201 -11.13204 -10.88489 -10.82945 -10.57908 -9.69830 -9.17387 -8.21932 -6.33670 0.56346 1.38475 1.40594 1.51789 1.54798 1.81410 2.39525 2.89589 3.01882 3.10816 3.48017 3.65601 3.73299 3.81910 4.04693 4.08993 4.15056 4.20690 4.25731 4.36599 4.43006 4.48501 4.50198 4.52691 4.65628 4.76202 4.79113 4.79294 4.87684 4.89727 4.93746 5.01191 5.03274 5.08809 5.12250 5.21055 5.30188 5.47925 5.55264 5.67450 5.81329 5.92398 5.98501 5.99714 6.18014 6.23722 6.82042 7.35621 8.90387 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.004725 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.134296 B = 5924.284918 C = 7718.291532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.143 3.857 4 C -0.048 4.048 5 C -0.185 4.185 6 C -0.211 4.211 7 C -0.024 4.024 8 C 0.145 3.855 9 H 0.135 0.865 10 C -0.129 4.129 11 C -0.115 4.115 12 C 0.032 3.968 13 N -0.525 5.525 14 C 0.076 3.924 15 C -0.087 4.087 16 C 0.032 3.968 17 C -0.543 4.543 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.263 1.263 25 O -0.187 6.187 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.171 0.829 32 H 0.175 0.825 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.053 0.947 43 H -0.014 1.014 44 H -0.016 1.016 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -18.420 -5.507 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.067 3.933 4 C -0.097 4.097 5 C -0.204 4.204 6 C -0.230 4.230 7 C -0.075 4.075 8 C 0.037 3.963 9 H 0.153 0.847 10 C -0.167 4.167 11 C -0.152 4.152 12 C -0.095 4.095 13 N -0.248 5.248 14 C -0.052 4.052 15 C -0.125 4.125 16 C -0.006 4.006 17 C -0.581 4.581 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.187 1.187 25 O -0.085 6.085 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.188 0.812 32 H 0.193 0.807 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.004 0.996 44 H 0.003 0.997 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.933 -18.198 -5.289 19.355 hybrid contribution -1.466 0.923 0.135 1.738 sum 2.467 -17.275 -5.153 18.195 Atomic orbital electron populations 1.23017 0.78485 1.04393 1.01293 1.87902 1.22163 1.27108 1.95704 1.20722 0.83975 0.85601 1.03014 1.22390 0.93561 1.08836 0.84945 1.21905 0.92777 1.05782 0.99932 1.21911 0.99011 1.08596 0.93521 1.23276 0.83381 1.04897 0.95928 1.21619 0.91751 0.91772 0.91160 0.84739 1.22930 1.02045 0.95805 0.95921 1.22775 1.02140 0.94020 0.96307 1.23232 0.99400 0.96384 0.90524 1.63878 1.42043 1.15951 1.02946 1.22218 0.90683 0.93390 0.98928 1.21371 0.98570 0.93884 0.98676 1.18904 0.93054 0.93873 0.94778 1.21656 1.07020 1.01163 1.28252 0.92185 1.26009 0.94677 1.02661 0.96423 1.70106 1.11650 1.34949 1.40704 0.85411 0.77689 0.78654 0.79091 1.19595 1.20533 1.18681 1.84122 1.17476 1.71222 1.35652 0.92077 0.87655 0.93618 0.92522 0.87747 0.81183 0.80727 0.92677 0.87309 0.88512 0.89151 0.89671 0.95198 0.92915 0.95660 0.93288 0.92789 0.99558 0.99745 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -11.08 10.69 -148.98 -1.59 -12.67 16 3 C 0.14 4.00 6.47 71.24 0.46 4.46 16 4 C -0.05 -1.54 6.95 24.83 0.17 -1.37 16 5 C -0.18 -5.17 10.81 22.19 0.24 -4.93 16 6 C -0.21 -5.70 10.79 22.19 0.24 -5.46 16 7 C -0.02 -0.72 3.83 24.83 0.10 -0.63 16 8 C 0.14 3.74 3.87 44.51 0.17 3.92 16 9 H 0.14 2.88 8.12 -2.39 -0.02 2.86 16 10 C -0.13 -2.65 6.49 31.92 0.21 -2.44 16 11 C -0.11 -2.20 7.09 32.13 0.23 -1.97 16 12 C 0.03 0.89 6.05 86.78 0.53 1.41 16 13 N -0.52 -16.63 5.12 -864.89 -4.43 -21.06 16 14 C 0.08 3.02 3.44 86.30 0.30 3.32 16 15 C -0.09 -3.99 5.26 30.59 0.16 -3.83 16 16 C 0.03 1.79 4.97 29.85 0.15 1.94 16 17 C -0.54 -32.39 9.11 25.60 0.23 -32.16 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 21 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 O -0.19 -6.67 8.03 -2.54 -0.02 -6.69 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 32 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.05 1.34 7.84 -2.39 -0.02 1.32 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.03 0.94 7.53 -2.38 -0.02 0.92 16 39 H 0.05 2.24 6.54 -2.39 -0.02 2.23 16 40 H 0.03 1.10 6.16 -2.39 -0.01 1.08 16 41 H 0.05 2.19 7.68 -2.39 -0.02 2.17 16 42 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 43 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -72.87 363.33 2.10 -70.77 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.94 Total: 15.98 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.89 Total: -35.60 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -4.15 Total: -79.13 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.61 Total: -19.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.87 2.10 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131117760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.723 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds