Wall clock time and date at job start Tue Mar 31 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99808 * 2 1 4 4 C 1.53001 * 109.46752 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47215 * 65.08679 * 4 3 2 6 6 C 1.42902 * 113.99999 * 184.93952 * 5 4 3 7 7 C 1.53004 * 109.47004 * 184.93767 * 6 5 4 8 8 N 1.46905 * 109.46807 * 64.52309 * 7 6 5 9 9 C 1.46899 * 110.99822 * 200.45255 * 8 7 6 10 10 C 1.50705 * 109.46737 * 64.15454 * 9 8 7 11 11 H 1.07993 * 120.00054 * 5.22888 * 10 9 8 12 12 C 1.37876 * 119.99740 * 185.22604 * 10 9 8 13 13 N 1.31514 * 119.99774 * 354.86064 * 12 10 9 14 14 Si 1.86795 * 119.99862 * 174.86117 * 12 10 9 15 15 H 1.48505 * 109.47313 * 94.99792 * 14 12 10 16 16 H 1.48504 * 109.47183 * 214.99555 * 14 12 10 17 17 H 1.48496 * 109.47190 * 334.99317 * 14 12 10 18 18 C 1.46904 * 110.99595 * 76.50441 * 8 7 6 19 19 C 1.50703 * 109.46703 * 190.00264 * 18 8 7 20 20 C 1.38229 * 120.00589 * 89.99418 * 19 18 8 21 21 C 1.38237 * 120.00332 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.99764 * 359.96617 * 21 20 19 23 23 C 1.38235 * 120.00067 * 0.26847 * 22 21 20 24 24 C 1.38230 * 120.00148 * 359.51553 * 23 22 21 25 25 H 1.09000 * 109.47220 * 300.00124 * 1 2 3 26 26 H 1.09007 * 109.46881 * 59.99898 * 1 2 3 27 27 H 1.08996 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47489 * 60.00317 * 3 2 1 29 29 H 1.08992 * 109.47491 * 299.99680 * 3 2 1 30 30 H 1.09003 * 109.47311 * 305.08937 * 4 3 2 31 31 H 1.09001 * 109.46904 * 185.08677 * 4 3 2 32 32 H 1.09003 * 109.47070 * 64.94501 * 6 5 4 33 33 H 1.09000 * 109.47592 * 304.94181 * 6 5 4 34 34 H 1.08991 * 109.47457 * 304.52353 * 7 6 5 35 35 H 1.09002 * 109.46826 * 184.51676 * 7 6 5 36 36 H 1.09003 * 109.47056 * 184.15021 * 9 8 7 37 37 H 1.08995 * 109.47309 * 304.15777 * 9 8 7 38 38 H 0.97005 * 119.99183 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47475 * 70.00276 * 18 8 7 40 40 H 1.09003 * 109.47256 * 309.99304 * 18 8 7 41 41 H 1.08000 * 119.99651 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.00111 * 179.97438 * 21 20 19 43 43 H 1.08000 * 119.99630 * 180.02562 * 22 21 20 44 44 H 1.08008 * 119.99818 * 179.73288 * 23 22 21 45 45 H 1.07995 * 120.00437 * 180.25244 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9659 0.5810 -1.2210 6 6 5.3697 0.3192 -1.2768 7 6 5.7351 -0.2090 -2.6655 8 7 5.4843 0.8351 -3.6680 9 6 5.3499 0.2543 -5.0106 10 6 4.1361 -0.6381 -5.0526 11 1 3.4786 -0.6958 -4.1979 12 6 3.8652 -1.3806 -6.1823 13 7 4.6069 -1.2348 -7.2585 14 14 2.4448 -2.5937 -6.1842 15 1 1.2381 -1.9422 -6.7540 16 1 2.8045 -3.7759 -7.0077 17 1 2.1625 -3.0275 -4.7923 18 6 6.5397 1.8565 -3.6396 19 6 6.1298 3.0263 -4.4967 20 6 5.4205 4.0749 -3.9418 21 6 5.0450 5.1481 -4.7280 22 6 5.3794 5.1730 -6.0690 23 6 6.0845 4.1221 -6.6251 24 6 6.4639 3.0510 -5.8380 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8506 0.5671 0.8418 31 1 3.9784 2.1764 0.0918 32 1 5.6305 -0.4255 -0.5247 33 1 5.9192 1.2401 -1.0821 34 1 5.1271 -1.0845 -2.8928 35 1 6.7896 -0.4843 -2.6836 36 1 5.2384 1.0539 -5.7429 37 1 6.2393 -0.3310 -5.2440 38 1 4.4164 -1.7575 -8.0532 39 1 7.4670 1.4317 -4.0240 40 1 6.6919 2.1933 -2.6141 41 1 5.1597 4.0557 -2.8939 42 1 4.4904 5.9673 -4.2944 43 1 5.0864 6.0117 -6.6831 44 1 6.3421 4.1395 -7.6739 45 1 7.0184 2.2318 -6.2715 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155460251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:57 Heat of formation + Delta-G solvation = -59.124281 kcal Electronic energy + Delta-G solvation = -23995.950602 eV Core-core repulsion = 20592.919342 eV Total energy + Delta-G solvation = -3403.031260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.97940 -38.18628 -37.17296 -35.92502 -32.54977 -31.47628 -30.45549 -30.19899 -28.30925 -26.94564 -26.10558 -24.35325 -22.45089 -22.32710 -21.87089 -21.07999 -19.61688 -16.79095 -16.58989 -16.31150 -16.20107 -15.42696 -15.26831 -15.11273 -14.71998 -14.63434 -14.38275 -14.09251 -13.48684 -13.37759 -12.94914 -12.75951 -12.51095 -12.09953 -12.02688 -11.86944 -11.69579 -11.47744 -11.24436 -11.18553 -10.89661 -10.67946 -10.57292 -10.50252 -10.38558 -10.01894 -9.71772 -9.56909 -9.17297 -9.04265 -8.43687 -8.27999 -8.20733 -7.12575 -5.92693 -3.90535 1.84073 1.90072 3.39510 3.45426 3.52927 3.88572 4.08182 4.23187 4.54529 5.07115 5.12980 5.27925 5.29839 5.33055 5.36623 5.42744 5.43217 5.44828 5.45727 5.57813 5.62286 5.67269 5.75319 5.76128 5.81112 5.92136 5.95618 6.03776 6.09375 6.12714 6.27756 6.48383 6.53433 6.78566 6.90911 6.96526 7.16870 7.25280 7.39107 7.40625 7.49746 7.73459 7.96455 8.20666 8.28381 8.67170 9.19722 9.72562 11.18464 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008369 B = 0.006337 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3344.823915 B = 4417.269066 C = 6450.156667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.065 3.935 4 C 0.062 3.938 5 O -0.350 6.350 6 C 0.072 3.928 7 C 0.060 3.940 8 N -0.520 5.520 9 C 0.189 3.811 10 C -0.500 4.500 11 H 0.068 0.932 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.892 3.108 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.271 1.271 18 C 0.088 3.912 19 C -0.059 4.059 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.099 4.099 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.040 0.960 37 H -0.012 1.012 38 H 0.258 0.742 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 9.575 12.115 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.012 4.012 4 C -0.015 4.015 5 O -0.269 6.269 6 C -0.005 4.005 7 C -0.069 4.069 8 N -0.244 5.244 9 C 0.064 3.936 10 C -0.539 4.539 11 H 0.087 0.913 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.721 3.279 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.196 1.196 18 C -0.039 4.039 19 C -0.059 4.059 20 C -0.120 4.120 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.118 4.118 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.052 9.499 11.901 15.227 hybrid contribution -0.137 -0.765 -0.198 0.802 sum -0.085 8.733 11.703 14.603 Atomic orbital electron populations 1.22714 0.81492 1.02655 0.99602 1.87979 1.19248 1.27423 1.95297 1.22538 0.92859 0.85381 1.00428 1.22405 0.93122 0.97166 0.88814 1.88197 1.22876 1.81115 1.34670 1.22576 0.82240 0.97905 0.97782 1.22042 0.98347 0.96546 0.89928 1.62106 1.41156 1.12663 1.08473 1.19849 0.95905 0.94263 0.83605 1.21247 1.09062 1.23240 1.00328 0.91349 1.24957 0.96725 0.97468 0.95458 1.69979 1.40042 1.41437 1.02626 0.86559 0.82546 0.80780 0.78060 1.20904 1.21467 1.19608 1.21067 0.93400 0.91942 0.97537 1.19769 0.97131 0.94855 0.94176 1.20893 0.97799 0.93579 0.99701 1.21002 1.00891 0.98555 0.94269 1.21002 0.99854 0.98723 0.95259 1.21054 0.99244 0.94311 0.99423 1.21124 0.99735 0.97497 0.93423 0.94641 0.93901 0.89797 0.92633 0.92119 0.93432 0.92539 0.94195 0.94451 0.88274 0.94725 0.94253 0.99422 0.93201 0.95240 0.91609 0.86656 0.86843 0.86893 0.86584 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.03 10.67 -40.00 -0.43 -6.46 16 3 C 0.06 0.87 6.32 37.16 0.23 1.11 16 4 C 0.06 0.87 6.32 37.16 0.23 1.11 16 5 O -0.35 -6.53 10.25 -40.00 -0.41 -6.94 16 6 C 0.07 1.19 6.13 37.16 0.23 1.42 16 7 C 0.06 1.18 5.22 -3.82 -0.02 1.16 16 8 N -0.52 -11.32 4.37 -237.51 -1.04 -12.36 16 9 C 0.19 4.95 4.48 -4.97 -0.02 4.93 16 10 C -0.50 -14.46 8.08 -34.44 -0.28 -14.74 16 11 H 0.07 2.04 7.41 -52.49 -0.39 1.65 16 12 C 0.05 1.59 5.45 -17.82 -0.10 1.49 16 13 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 14 Si 0.89 22.52 29.54 -169.99 -5.02 17.49 16 15 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.09 1.62 4.94 -4.97 -0.02 1.59 16 19 C -0.06 -1.08 4.90 -104.62 -0.51 -1.59 16 20 C -0.10 -1.67 9.70 -39.59 -0.38 -2.06 16 21 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 22 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.12 -2.02 10.05 -39.59 -0.40 -2.41 16 24 C -0.10 -1.83 7.87 -39.58 -0.31 -2.14 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.55 6.71 -51.93 -0.35 0.20 16 34 H 0.10 2.25 6.52 -51.93 -0.34 1.91 16 35 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 36 H 0.04 1.10 5.60 -51.93 -0.29 0.81 16 37 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 40 H 0.07 1.05 6.56 -51.93 -0.34 0.71 16 41 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.12 2.28 7.91 -52.49 -0.42 1.87 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -33.20 370.58 -9.20 -42.39 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.59 Total: 0.09 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.03 Total: -13.34 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.30 Total: -38.83 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.84 Total: -13.40 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.20 -9.20 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155460251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.731 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds