Wall clock time and date at job start Tue Mar 31 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99808 * 2 1 4 4 C 1.53001 * 109.46752 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47215 * 65.08679 * 4 3 2 6 6 C 1.42902 * 113.99999 * 184.93952 * 5 4 3 7 7 C 1.53004 * 109.47004 * 184.93767 * 6 5 4 8 8 N 1.46905 * 109.46807 * 64.52309 * 7 6 5 9 9 C 1.46899 * 110.99822 * 200.45255 * 8 7 6 10 10 C 1.50705 * 109.46737 * 64.15454 * 9 8 7 11 11 H 1.07993 * 120.00054 * 5.22888 * 10 9 8 12 12 C 1.37876 * 119.99740 * 185.22604 * 10 9 8 13 13 N 1.31514 * 119.99774 * 354.86064 * 12 10 9 14 14 Si 1.86795 * 119.99862 * 174.86117 * 12 10 9 15 15 H 1.48505 * 109.47313 * 94.99792 * 14 12 10 16 16 H 1.48504 * 109.47183 * 214.99555 * 14 12 10 17 17 H 1.48496 * 109.47190 * 334.99317 * 14 12 10 18 18 C 1.46904 * 110.99595 * 76.50441 * 8 7 6 19 19 C 1.50703 * 109.46703 * 190.00264 * 18 8 7 20 20 C 1.38229 * 120.00589 * 89.99418 * 19 18 8 21 21 C 1.38237 * 120.00332 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.99764 * 359.96617 * 21 20 19 23 23 C 1.38235 * 120.00067 * 0.26847 * 22 21 20 24 24 C 1.38230 * 120.00148 * 359.51553 * 23 22 21 25 25 H 1.09000 * 109.47220 * 300.00124 * 1 2 3 26 26 H 1.09007 * 109.46881 * 59.99898 * 1 2 3 27 27 H 1.08996 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47489 * 60.00317 * 3 2 1 29 29 H 1.08992 * 109.47491 * 299.99680 * 3 2 1 30 30 H 1.09003 * 109.47311 * 305.08937 * 4 3 2 31 31 H 1.09001 * 109.46904 * 185.08677 * 4 3 2 32 32 H 1.09003 * 109.47070 * 64.94501 * 6 5 4 33 33 H 1.09000 * 109.47592 * 304.94181 * 6 5 4 34 34 H 1.08991 * 109.47457 * 304.52353 * 7 6 5 35 35 H 1.09002 * 109.46826 * 184.51676 * 7 6 5 36 36 H 1.09003 * 109.47056 * 184.15021 * 9 8 7 37 37 H 1.08995 * 109.47309 * 304.15777 * 9 8 7 38 38 H 0.97005 * 119.99183 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47475 * 70.00276 * 18 8 7 40 40 H 1.09003 * 109.47256 * 309.99304 * 18 8 7 41 41 H 1.08000 * 119.99651 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.00111 * 179.97438 * 21 20 19 43 43 H 1.08000 * 119.99630 * 180.02562 * 22 21 20 44 44 H 1.08008 * 119.99818 * 179.73288 * 23 22 21 45 45 H 1.07995 * 120.00437 * 180.25244 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9659 0.5810 -1.2210 6 6 5.3697 0.3192 -1.2768 7 6 5.7351 -0.2090 -2.6655 8 7 5.4843 0.8351 -3.6680 9 6 5.3499 0.2543 -5.0106 10 6 4.1361 -0.6381 -5.0526 11 1 3.4786 -0.6958 -4.1979 12 6 3.8652 -1.3806 -6.1823 13 7 4.6069 -1.2348 -7.2585 14 14 2.4448 -2.5937 -6.1842 15 1 1.2381 -1.9422 -6.7540 16 1 2.8045 -3.7759 -7.0077 17 1 2.1625 -3.0275 -4.7923 18 6 6.5397 1.8565 -3.6396 19 6 6.1298 3.0263 -4.4967 20 6 5.4205 4.0749 -3.9418 21 6 5.0450 5.1481 -4.7280 22 6 5.3794 5.1730 -6.0690 23 6 6.0845 4.1221 -6.6251 24 6 6.4639 3.0510 -5.8380 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8506 0.5671 0.8418 31 1 3.9784 2.1764 0.0918 32 1 5.6305 -0.4255 -0.5247 33 1 5.9192 1.2401 -1.0821 34 1 5.1271 -1.0845 -2.8928 35 1 6.7896 -0.4843 -2.6836 36 1 5.2384 1.0539 -5.7429 37 1 6.2393 -0.3310 -5.2440 38 1 4.4164 -1.7575 -8.0532 39 1 7.4670 1.4317 -4.0240 40 1 6.6919 2.1933 -2.6141 41 1 5.1597 4.0557 -2.8939 42 1 4.4904 5.9673 -4.2944 43 1 5.0864 6.0117 -6.6831 44 1 6.3421 4.1395 -7.6739 45 1 7.0184 2.2318 -6.2715 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155460251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:56 Heat of formation + Delta-G solvation = -80.959096 kcal Electronic energy + Delta-G solvation = -23996.897431 eV Core-core repulsion = 20592.919342 eV Total energy + Delta-G solvation = -3403.978089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33798 -39.34970 -38.45711 -37.40258 -34.72003 -32.80221 -31.75150 -31.45066 -29.91539 -28.63071 -27.08367 -26.06665 -24.14756 -23.37965 -23.26277 -22.48703 -21.20814 -18.54622 -17.85263 -17.72582 -17.49270 -16.94324 -16.52149 -16.29767 -16.25177 -16.02287 -15.82856 -15.57204 -14.98017 -14.92442 -14.21780 -14.15888 -13.87179 -13.65745 -13.51646 -13.33191 -13.09872 -12.84761 -12.79284 -12.60121 -12.51237 -12.32301 -12.07385 -11.97403 -11.80411 -11.70566 -11.41411 -11.19866 -10.59497 -10.56470 -10.32924 -9.68219 -9.55331 -8.88608 -8.17823 -6.23697 0.55050 0.61745 1.37386 1.37879 1.51708 2.41213 2.87641 2.93068 2.95977 3.14385 3.50582 3.98224 4.03771 4.12335 4.24540 4.27356 4.31123 4.34543 4.41854 4.43973 4.49179 4.50972 4.53971 4.63319 4.65371 4.71071 4.75493 4.79939 4.85604 4.86475 4.88412 5.10090 5.21021 5.23422 5.27359 5.41786 5.66153 5.69419 5.70958 5.85426 6.12972 6.23350 6.27351 6.38293 6.55442 6.74565 6.93484 7.43987 8.93074 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008369 B = 0.006337 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3344.823915 B = 4417.269066 C = 6450.156667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.061 3.939 4 C 0.056 3.944 5 O -0.392 6.392 6 C 0.081 3.919 7 C 0.057 3.943 8 N -0.525 5.525 9 C 0.209 3.791 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.958 3.042 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.270 1.270 18 C 0.091 3.909 19 C -0.082 4.082 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.127 4.127 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.018 0.982 37 H -0.044 1.044 38 H 0.262 0.738 39 H 0.023 0.977 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.129 0.871 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 11.270 13.981 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.015 4.015 4 C -0.020 4.020 5 O -0.312 6.312 6 C 0.004 3.996 7 C -0.071 4.071 8 N -0.249 5.249 9 C 0.083 3.917 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.193 4.193 13 N -0.573 5.573 14 Si 0.783 3.217 15 H -0.201 1.201 16 H -0.204 1.204 17 H -0.194 1.194 18 C -0.036 4.036 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.145 4.145 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.036 0.964 37 H -0.026 1.026 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.114 0.886 41 H 0.150 0.850 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.060 11.204 13.790 17.799 hybrid contribution 0.213 -1.219 -0.756 1.450 sum -0.847 9.985 13.034 16.441 Atomic orbital electron populations 1.22879 0.79922 1.03435 1.00716 1.87923 1.21218 1.29007 1.95551 1.22710 0.92633 0.84755 1.01434 1.22688 0.93549 0.98404 0.87367 1.88140 1.23727 1.81978 1.37354 1.22486 0.82049 0.99503 0.95543 1.22063 0.98442 0.95042 0.91540 1.62024 1.43240 1.13388 1.06271 1.19416 0.93610 0.92730 0.85990 1.21445 1.09699 1.24105 0.99917 0.92746 1.25780 0.99408 0.99137 0.95022 1.70091 1.41643 1.42344 1.03189 0.85538 0.79368 0.78641 0.78128 1.20149 1.20352 1.19425 1.21130 0.91978 0.91071 0.99407 1.19872 0.98604 0.95641 0.94140 1.21158 0.97268 0.93414 1.00821 1.21444 0.99977 0.98810 0.94135 1.21416 0.98451 0.98858 0.95869 1.21315 0.99515 0.94344 1.00076 1.21127 1.01114 0.97979 0.94308 0.91846 0.94385 0.89330 0.88887 0.93666 0.92244 0.89927 0.91987 0.91997 0.92128 0.93423 0.96357 1.02600 0.92903 0.95915 0.88552 0.84968 0.83321 0.83595 0.85324 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.42 -12.79 10.67 -144.42 -1.54 -14.33 16 3 C 0.06 1.53 6.32 71.98 0.45 1.98 16 4 C 0.06 1.44 6.32 71.98 0.45 1.90 16 5 O -0.39 -14.27 10.25 -144.42 -1.48 -15.75 16 6 C 0.08 2.55 6.13 71.98 0.44 2.99 16 7 C 0.06 2.30 5.22 86.30 0.45 2.75 16 8 N -0.53 -23.48 4.37 -905.34 -3.96 -27.44 16 9 C 0.21 11.56 4.48 85.56 0.38 11.94 16 10 C -0.51 -30.87 8.08 25.60 0.21 -30.67 16 11 H 0.05 3.37 7.41 -2.91 -0.02 3.35 16 12 C 0.00 0.25 5.45 84.65 0.46 0.71 16 13 N -0.93 -57.99 13.29 21.45 0.29 -57.70 16 14 Si 0.96 47.14 29.54 68.60 2.03 49.17 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 18 C 0.09 3.37 4.94 85.56 0.42 3.79 16 19 C -0.08 -3.02 4.90 -19.86 -0.10 -3.12 16 20 C -0.11 -3.39 9.70 22.27 0.22 -3.17 16 21 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 22 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 23 C -0.13 -4.43 10.05 22.27 0.22 -4.20 16 24 C -0.13 -4.86 7.87 22.27 0.18 -4.69 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.63 6.71 -2.39 -0.02 1.62 16 34 H 0.06 2.88 6.52 -2.39 -0.02 2.86 16 35 H 0.05 1.74 7.99 -2.39 -0.02 1.72 16 36 H 0.02 1.09 5.60 -2.39 -0.01 1.08 16 37 H -0.04 -2.62 8.14 -2.39 -0.02 -2.64 16 38 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 39 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 40 H 0.10 2.90 6.56 -2.39 -0.02 2.89 16 41 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 43 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 45 H 0.10 4.02 7.91 -2.91 -0.02 3.99 16 Total: -1.00 -74.91 370.58 1.76 -73.14 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.94 Total: 17.38 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.49 Total: -24.47 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.67 Total: -85.14 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -3.02 Total: -30.08 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -74.91 1.76 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155460251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.814 kcal (2) G-P(sol) polarization free energy of solvation -74.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds