Wall clock time and date at job start Tue Mar 31 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47247 * 2 1 4 4 C 1.42896 * 113.99953 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47193 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46831 * 184.99660 * 5 4 3 7 7 C 1.52998 * 109.47211 * 305.00018 * 5 4 3 8 8 N 1.46506 * 109.46782 * 65.00036 * 5 4 3 9 9 C 1.39664 * 119.99815 * 154.99986 * 8 5 4 10 10 C 1.38976 * 120.04890 * 0.02562 * 9 8 5 11 11 C 1.38111 * 120.03690 * 179.97438 * 10 9 8 12 12 C 1.38211 * 120.12949 * 359.97438 * 11 10 9 13 13 C 1.38770 * 120.09445 * 0.02889 * 12 11 10 14 14 O 1.35899 * 120.02139 * 179.97438 * 13 12 11 15 15 C 1.42902 * 116.99969 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.46920 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46718 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99805 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99901 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00226 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00186 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47057 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47567 * 119.99768 * 21 19 17 24 24 H 1.48501 * 109.47203 * 239.99717 * 21 19 17 25 25 C 1.38618 * 119.96138 * 359.69578 * 13 12 11 26 26 H 1.08995 * 109.47450 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46852 * 300.00448 * 1 2 3 28 28 H 1.09005 * 109.47215 * 59.99845 * 1 2 3 29 29 H 1.08996 * 109.46874 * 239.99526 * 2 1 3 30 30 H 1.09000 * 109.46800 * 119.99568 * 2 1 3 31 31 H 1.08997 * 109.47325 * 59.99852 * 4 3 2 32 32 H 1.08998 * 109.47242 * 299.99257 * 4 3 2 33 33 H 1.09002 * 109.47121 * 299.99744 * 7 5 4 34 34 H 1.09002 * 109.46901 * 59.99641 * 7 5 4 35 35 H 1.09001 * 109.47093 * 179.97438 * 7 5 4 36 36 H 0.96995 * 120.00050 * 334.72425 * 8 5 4 37 37 H 1.08002 * 119.98103 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.93437 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.95866 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.46978 * 299.99965 * 15 14 13 41 41 H 1.08994 * 109.46897 * 59.99893 * 15 14 13 42 42 H 1.08999 * 109.47391 * 299.99864 * 16 15 14 43 43 H 1.08994 * 109.47299 * 60.00290 * 16 15 14 44 44 H 0.96997 * 120.00078 * 179.97438 * 20 19 17 45 45 H 1.08005 * 120.06859 * 180.31937 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 1 4.9083 3.0253 -0.0911 7 6 3.1572 3.6441 -1.1827 8 7 3.3879 3.5610 1.2507 9 6 4.0426 4.6970 1.7317 10 6 5.1089 5.2379 1.0234 11 6 5.7559 6.3617 1.4990 12 6 5.3447 6.9514 2.6794 13 6 4.2806 6.4158 3.3911 14 8 3.8780 6.9965 4.5519 15 6 4.5957 8.1554 4.9806 16 6 4.0026 8.6652 6.2956 17 6 4.7600 9.8870 6.7479 18 1 5.5824 10.2621 6.1569 19 6 4.4037 10.5253 7.9169 20 7 3.4026 10.0682 8.6370 21 14 5.3420 12.0402 8.4773 22 1 6.4149 12.3484 7.4980 23 1 4.4106 13.1930 8.5709 24 1 5.9469 11.7833 9.8090 25 6 3.6249 5.2914 2.9143 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9765 0.8892 33 1 3.4827 3.1808 -2.1141 34 1 2.0744 3.5570 -1.0927 35 1 3.4379 4.6973 -1.1829 36 1 2.6409 3.1866 1.7434 37 1 5.4319 4.7793 0.1004 38 1 6.5841 6.7809 0.9469 39 1 5.8529 7.8298 3.0490 40 1 5.6445 7.8986 5.1299 41 1 4.5167 8.9332 4.2211 42 1 2.9540 8.9220 6.1458 43 1 4.0813 7.8875 7.0552 44 1 3.1522 10.5171 9.4596 45 1 2.7932 4.8761 3.4642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165147189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:59 Heat of formation + Delta-G solvation = -75.654748 kcal Electronic energy + Delta-G solvation = -22534.452310 eV Core-core repulsion = 19130.704235 eV Total energy + Delta-G solvation = -3403.748075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.82263 -38.85763 -37.58793 -35.53061 -33.31892 -32.30350 -31.09760 -30.55923 -29.02284 -28.03774 -26.59654 -24.95257 -23.21319 -22.60060 -22.28526 -20.79480 -20.13946 -18.07202 -17.08789 -16.59433 -16.47965 -16.09531 -15.60566 -15.29593 -15.20580 -14.78957 -14.43838 -14.30911 -14.13235 -13.33250 -13.31448 -13.11379 -12.72506 -12.68043 -12.47466 -12.28939 -12.14607 -11.74337 -11.65649 -11.45019 -11.35211 -11.23471 -11.03563 -10.88746 -10.68970 -10.39347 -10.02216 -9.96649 -9.66980 -9.59950 -9.23788 -8.41901 -7.88745 -7.25757 -6.06884 -4.11073 1.77833 1.93274 3.17184 3.29009 3.33850 3.36538 3.40394 4.06403 4.17993 4.44097 4.46897 4.62529 4.72598 4.79856 4.94349 4.96838 5.01681 5.14356 5.26126 5.29515 5.33010 5.42042 5.47286 5.51193 5.60803 5.69218 5.72346 5.73454 5.84791 6.11820 6.12936 6.14617 6.19352 6.47782 6.67665 6.71398 6.76697 6.82981 6.95455 7.46160 7.57286 7.69707 7.77683 7.88287 8.17139 8.29145 8.94942 9.52990 11.04804 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.002301 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.541446 B =12167.191927 C =12954.172749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.054 3.946 5 C 0.156 3.844 6 H 0.090 0.910 7 C -0.165 4.165 8 N -0.740 5.740 9 C 0.249 3.751 10 C -0.247 4.247 11 C -0.037 4.037 12 C -0.266 4.266 13 C 0.188 3.812 14 O -0.317 6.317 15 C 0.067 3.933 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.239 4.239 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -19.831 -20.875 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.303 6.303 4 C -0.023 4.023 5 C 0.050 3.950 6 H 0.108 0.892 7 C -0.224 4.224 8 N -0.370 5.370 9 C 0.146 3.854 10 C -0.270 4.270 11 C -0.056 4.056 12 C -0.286 4.286 13 C 0.140 3.860 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.262 4.262 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.238 0.762 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.538 -19.752 -20.738 28.644 hybrid contribution 0.535 0.568 0.491 0.922 sum -0.003 -19.184 -20.248 27.892 Atomic orbital electron populations 1.21744 0.93628 1.02248 1.03307 1.22461 0.95723 0.83744 0.99994 1.87913 1.20603 1.26372 1.95399 1.22813 0.82012 0.96576 1.00922 1.20923 0.99012 0.89944 0.85122 0.89180 1.22198 1.02354 1.00967 0.96880 1.44596 1.37595 1.29667 1.25165 1.17370 0.90654 0.86122 0.91215 1.20396 1.01477 1.01826 1.03293 1.20603 0.97104 0.93641 0.94205 1.21131 1.02571 1.05375 0.99558 1.18823 0.91043 0.90778 0.85350 1.86146 1.57584 1.43858 1.35343 1.23302 0.95239 0.83145 0.99066 1.19134 0.97220 0.95991 0.88953 1.21025 1.16497 1.11226 1.07480 0.92286 1.25001 0.95182 0.97708 0.96420 1.69992 1.27527 1.40373 1.14940 0.86430 0.79779 0.82550 0.78617 1.19631 1.20869 1.20881 1.19668 1.06713 1.00385 0.99419 0.91151 0.91678 0.91855 0.93505 0.93398 0.92111 0.92587 0.92359 0.91418 0.92037 0.76238 0.86671 0.86441 0.85652 0.93115 0.93110 0.95423 0.95439 0.92806 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.37 6.66 37.16 0.25 0.61 16 3 O -0.38 -3.25 9.19 -35.23 -0.32 -3.58 16 4 C 0.05 0.39 5.68 37.16 0.21 0.60 16 5 C 0.16 1.33 2.67 -67.92 -0.18 1.15 16 6 H 0.09 0.71 6.48 -51.93 -0.34 0.37 16 7 C -0.17 -1.42 9.23 37.16 0.34 -1.07 16 8 N -0.74 -8.12 5.23 -52.18 -0.27 -8.39 16 9 C 0.25 3.43 6.63 -83.81 -0.56 2.88 16 10 C -0.25 -3.23 8.84 -39.35 -0.35 -3.58 16 11 C -0.04 -0.51 10.03 -39.64 -0.40 -0.91 16 12 C -0.27 -4.45 9.04 -39.39 -0.36 -4.80 16 13 C 0.19 3.50 6.68 -39.24 -0.26 3.24 16 14 O -0.32 -6.86 10.13 -19.42 -0.20 -7.06 16 15 C 0.07 1.48 4.68 37.16 0.17 1.66 16 16 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 17 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 21 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.24 -3.90 9.83 -39.24 -0.39 -4.29 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 35 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 36 H 0.40 4.34 8.39 -40.82 -0.34 4.00 16 37 H 0.12 1.23 6.11 -52.49 -0.32 0.91 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 40 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.33 370.31 -8.72 -40.05 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.53 Total: 1.10 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.69 Total: -18.13 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.46 Total: -34.51 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.52 Total: -10.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.33 -8.72 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165147189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.607 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds