Wall clock time and date at job start Tue Mar 31 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47247 * 2 1 4 4 C 1.42896 * 113.99953 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47193 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46831 * 184.99660 * 5 4 3 7 7 C 1.52998 * 109.47211 * 305.00018 * 5 4 3 8 8 N 1.46506 * 109.46782 * 65.00036 * 5 4 3 9 9 C 1.39664 * 119.99815 * 154.99986 * 8 5 4 10 10 C 1.38976 * 120.04890 * 0.02562 * 9 8 5 11 11 C 1.38111 * 120.03690 * 179.97438 * 10 9 8 12 12 C 1.38211 * 120.12949 * 359.97438 * 11 10 9 13 13 C 1.38770 * 120.09445 * 0.02889 * 12 11 10 14 14 O 1.35899 * 120.02139 * 179.97438 * 13 12 11 15 15 C 1.42902 * 116.99969 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.46920 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46718 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99805 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99901 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00226 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00186 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47057 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47567 * 119.99768 * 21 19 17 24 24 H 1.48501 * 109.47203 * 239.99717 * 21 19 17 25 25 C 1.38618 * 119.96138 * 359.69578 * 13 12 11 26 26 H 1.08995 * 109.47450 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46852 * 300.00448 * 1 2 3 28 28 H 1.09005 * 109.47215 * 59.99845 * 1 2 3 29 29 H 1.08996 * 109.46874 * 239.99526 * 2 1 3 30 30 H 1.09000 * 109.46800 * 119.99568 * 2 1 3 31 31 H 1.08997 * 109.47325 * 59.99852 * 4 3 2 32 32 H 1.08998 * 109.47242 * 299.99257 * 4 3 2 33 33 H 1.09002 * 109.47121 * 299.99744 * 7 5 4 34 34 H 1.09002 * 109.46901 * 59.99641 * 7 5 4 35 35 H 1.09001 * 109.47093 * 179.97438 * 7 5 4 36 36 H 0.96995 * 120.00050 * 334.72425 * 8 5 4 37 37 H 1.08002 * 119.98103 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.93437 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.95866 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.46978 * 299.99965 * 15 14 13 41 41 H 1.08994 * 109.46897 * 59.99893 * 15 14 13 42 42 H 1.08999 * 109.47391 * 299.99864 * 16 15 14 43 43 H 1.08994 * 109.47299 * 60.00290 * 16 15 14 44 44 H 0.96997 * 120.00078 * 179.97438 * 20 19 17 45 45 H 1.08005 * 120.06859 * 180.31937 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 1 4.9083 3.0253 -0.0911 7 6 3.1572 3.6441 -1.1827 8 7 3.3879 3.5610 1.2507 9 6 4.0426 4.6970 1.7317 10 6 5.1089 5.2379 1.0234 11 6 5.7559 6.3617 1.4990 12 6 5.3447 6.9514 2.6794 13 6 4.2806 6.4158 3.3911 14 8 3.8780 6.9965 4.5519 15 6 4.5957 8.1554 4.9806 16 6 4.0026 8.6652 6.2956 17 6 4.7600 9.8870 6.7479 18 1 5.5824 10.2621 6.1569 19 6 4.4037 10.5253 7.9169 20 7 3.4026 10.0682 8.6370 21 14 5.3420 12.0402 8.4773 22 1 6.4149 12.3484 7.4980 23 1 4.4106 13.1930 8.5709 24 1 5.9469 11.7833 9.8090 25 6 3.6249 5.2914 2.9143 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9765 0.8892 33 1 3.4827 3.1808 -2.1141 34 1 2.0744 3.5570 -1.0927 35 1 3.4379 4.6973 -1.1829 36 1 2.6409 3.1866 1.7434 37 1 5.4319 4.7793 0.1004 38 1 6.5841 6.7809 0.9469 39 1 5.8529 7.8298 3.0490 40 1 5.6445 7.8986 5.1299 41 1 4.5167 8.9332 4.2211 42 1 2.9540 8.9220 6.1458 43 1 4.0813 7.8875 7.0552 44 1 3.1522 10.5171 9.4596 45 1 2.7932 4.8761 3.4642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165147189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:59 Heat of formation + Delta-G solvation = -94.394191 kcal Electronic energy + Delta-G solvation = -22535.264913 eV Core-core repulsion = 19130.704235 eV Total energy + Delta-G solvation = -3404.560678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06180 -39.72719 -38.66919 -36.51937 -35.42357 -33.11744 -32.54045 -31.63732 -30.43708 -29.07331 -27.24090 -26.92821 -23.87254 -23.74920 -23.59079 -22.21262 -21.27753 -19.38391 -18.37708 -17.74081 -17.31832 -17.06127 -16.90282 -16.88763 -16.53868 -16.38043 -15.65895 -15.13575 -14.85449 -14.43649 -14.39229 -14.31939 -14.16253 -13.78643 -13.69012 -13.21318 -13.17858 -13.03578 -12.85768 -12.66105 -12.51654 -12.31978 -12.20211 -12.03843 -11.95589 -11.79659 -11.62737 -11.53068 -11.36120 -10.84527 -10.62610 -10.54305 -9.20962 -8.31880 -8.26506 -6.40206 0.59203 0.71791 1.41052 1.42381 1.56061 2.17322 2.40015 2.68052 2.81782 2.98789 3.07705 3.83377 4.00674 4.10831 4.19145 4.21354 4.26654 4.29503 4.33775 4.36358 4.46797 4.47585 4.52150 4.56027 4.67922 4.70908 4.75478 4.83955 4.90042 4.97061 5.04039 5.08816 5.27019 5.31310 5.34938 5.44070 5.47260 5.54314 5.66530 5.68591 5.78734 6.07554 6.24898 6.47224 6.63620 6.74877 6.81657 7.29816 8.87013 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.002301 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.541446 B =12167.191927 C =12954.172749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.405 6.405 4 C 0.055 3.945 5 C 0.151 3.849 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.733 5.733 9 C 0.256 3.744 10 C -0.237 4.237 11 C -0.031 4.031 12 C -0.283 4.283 13 C 0.152 3.848 14 O -0.344 6.344 15 C 0.087 3.913 16 C 0.028 3.972 17 C -0.544 4.544 18 H 0.071 0.929 19 C -0.001 4.001 20 N -0.932 5.932 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.256 4.256 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.402 0.598 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.059 0.941 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -20.470 -23.324 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.325 6.325 4 C -0.022 4.022 5 C 0.046 3.954 6 H 0.124 0.876 7 C -0.218 4.218 8 N -0.362 5.362 9 C 0.151 3.849 10 C -0.259 4.259 11 C -0.049 4.049 12 C -0.304 4.304 13 C 0.106 3.894 14 O -0.258 6.258 15 C 0.012 3.988 16 C -0.010 4.010 17 C -0.582 4.582 18 H 0.089 0.911 19 C -0.199 4.199 20 N -0.571 5.571 21 Si 0.802 3.198 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.280 4.280 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.237 0.763 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.366 -20.435 -23.230 30.969 hybrid contribution -0.132 0.579 1.115 1.264 sum 1.233 -19.855 -22.115 29.746 Atomic orbital electron populations 1.21764 0.93616 1.03113 1.02412 1.22593 0.95813 0.83042 1.00880 1.87891 1.21378 1.27659 1.95586 1.22845 0.81612 0.95562 1.02137 1.21191 0.99851 0.90711 0.83641 0.87640 1.22139 1.01296 1.00521 0.97885 1.44787 1.36996 1.28582 1.25844 1.17453 0.90744 0.86514 0.90213 1.20779 1.00227 1.01082 1.03843 1.20972 0.97534 0.93380 0.93030 1.21215 1.02484 1.05845 1.00839 1.19149 0.93027 0.92145 0.85088 1.86055 1.58331 1.43850 1.37547 1.22838 0.95073 0.83999 0.96868 1.18980 0.95856 0.95333 0.90800 1.21430 1.16965 1.11721 1.08084 0.91064 1.26081 0.96089 1.01346 0.96407 1.70136 1.29259 1.42187 1.15542 0.85200 0.78489 0.77793 0.78344 1.18067 1.20207 1.20186 1.19773 1.06989 1.00459 1.00772 0.89449 0.92930 0.92349 0.92045 0.92994 0.89738 0.92459 0.90155 0.93068 0.93031 0.76308 0.83372 0.83124 0.86062 0.92203 0.92283 0.98432 0.98391 0.92443 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.59 6.66 71.98 0.48 1.06 16 3 O -0.41 -6.19 9.19 -148.98 -1.37 -7.56 16 4 C 0.06 0.64 5.68 71.98 0.41 1.05 16 5 C 0.15 2.13 2.67 44.99 0.12 2.25 16 6 H 0.11 1.21 6.48 -2.39 -0.02 1.20 16 7 C -0.16 -2.32 9.23 71.98 0.66 -1.66 16 8 N -0.73 -14.96 5.23 -318.99 -1.67 -16.62 16 9 C 0.26 6.72 6.63 38.20 0.25 6.97 16 10 C -0.24 -5.49 8.84 22.42 0.20 -5.29 16 11 C -0.03 -0.78 10.03 22.23 0.22 -0.55 16 12 C -0.28 -9.38 9.04 22.39 0.20 -9.17 16 13 C 0.15 5.84 6.68 22.49 0.15 5.99 16 14 O -0.34 -15.73 10.13 -92.41 -0.94 -16.67 16 15 C 0.09 4.02 4.68 71.98 0.34 4.36 16 16 C 0.03 1.56 5.34 29.85 0.16 1.72 16 17 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 18 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 19 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 20 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 21 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 C -0.26 -8.58 9.83 22.49 0.22 -8.36 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.92 7.56 -2.39 -0.02 0.91 16 35 H 0.05 0.85 7.70 -2.39 -0.02 0.84 16 36 H 0.40 8.40 8.39 -92.71 -0.78 7.62 16 37 H 0.15 2.45 6.11 -2.91 -0.02 2.44 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.12 4.01 6.29 -2.91 -0.02 3.99 16 40 H 0.06 2.62 7.66 -2.39 -0.02 2.60 16 41 H 0.06 2.59 7.66 -2.39 -0.02 2.58 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 45 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -70.18 370.31 3.37 -66.80 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.18 Total: 18.68 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 4.85 Total: -33.43 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.38 Total: -74.17 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -2.31 Total: -24.23 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.18 3.37 -66.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165147189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.592 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds