Wall clock time and date at job start Tue Mar 31 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 H 1.09001 * 109.46576 * 30.00130 * 3 2 1 5 5 C 1.52999 * 109.46901 * 269.99899 * 3 2 1 6 6 C 1.52991 * 109.46955 * 149.99745 * 3 2 1 7 7 H 1.09003 * 109.46813 * 184.99984 * 6 3 2 8 8 C 1.53002 * 109.47536 * 305.00062 * 6 3 2 9 9 N 1.46505 * 109.47343 * 65.00547 * 6 3 2 10 10 C 1.39660 * 120.00172 * 154.99752 * 9 6 3 11 11 C 1.38972 * 120.04873 * 359.97438 * 10 9 6 12 12 C 1.38120 * 120.03773 * 180.02562 * 11 10 9 13 13 C 1.38217 * 120.12663 * 0.28148 * 12 11 10 14 14 C 1.38775 * 120.09286 * 359.43840 * 13 12 11 15 15 O 1.35891 * 120.01984 * 180.25661 * 14 13 12 16 16 C 1.42899 * 116.99896 * 0.30308 * 15 14 13 17 17 C 1.53002 * 109.47266 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47288 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00325 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99859 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47073 * 90.00396 * 22 20 18 24 24 H 1.48498 * 109.46975 * 210.00121 * 22 20 18 25 25 H 1.48494 * 109.47298 * 330.00482 * 22 20 18 26 26 C 1.38614 * 119.95978 * 0.56135 * 14 13 12 27 27 H 1.09004 * 109.46892 * 59.99898 * 1 2 3 28 28 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47375 * 300.00305 * 1 2 3 30 30 H 1.09007 * 109.47292 * 60.00248 * 5 3 2 31 31 H 1.08999 * 109.46516 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.47167 * 299.99901 * 5 3 2 33 33 H 1.09003 * 109.46949 * 180.02562 * 8 6 3 34 34 H 1.08999 * 109.47117 * 300.00051 * 8 6 3 35 35 H 1.08997 * 109.46713 * 59.99977 * 8 6 3 36 36 H 0.96999 * 119.99410 * 334.99056 * 9 6 3 37 37 H 1.07998 * 119.98425 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.93398 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.95468 * 179.70439 * 13 12 11 40 40 H 1.09001 * 109.47212 * 299.99273 * 16 15 14 41 41 H 1.08999 * 109.47280 * 59.99875 * 16 15 14 42 42 H 1.08998 * 109.47436 * 300.00269 * 17 16 15 43 43 H 1.09005 * 109.47097 * 59.99485 * 17 16 15 44 44 H 0.97005 * 120.00135 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.06243 * 179.74355 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3588 1.2632 0.7213 7 1 3.7608 2.2734 0.7995 8 6 3.1696 0.6797 2.1229 9 7 4.2913 0.4239 -0.0353 10 6 5.6680 0.6233 0.0880 11 6 6.1547 1.6179 0.9278 12 6 7.5163 1.8152 1.0492 13 6 8.3979 1.0286 0.3321 14 6 7.9181 0.0300 -0.5036 15 8 8.7864 -0.7460 -1.2040 16 6 10.1797 -0.4827 -1.0269 17 6 10.9949 -1.4490 -1.8887 18 6 12.4642 -1.1710 -1.7024 19 1 12.7847 -0.3841 -1.0357 20 6 13.3995 -1.9220 -2.3824 21 7 13.0094 -2.8805 -3.1939 22 14 15.2209 -1.5778 -2.1509 23 1 15.7414 -2.4000 -1.0291 24 1 15.9518 -1.9214 -3.3971 25 1 15.4175 -0.1386 -1.8426 26 6 6.5523 -0.1713 -0.6283 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.2568 1.8015 -1.9564 31 1 2.6606 2.7673 -1.4424 32 1 2.8829 1.0774 -1.9563 33 1 4.1304 0.6500 2.6369 34 1 2.4759 1.3042 2.6859 35 1 2.7676 -0.3304 2.0446 36 1 3.9523 -0.2703 -0.6219 37 1 5.4678 2.2375 1.4852 38 1 7.8926 2.5889 1.7020 39 1 9.4619 1.1884 0.4255 40 1 10.3966 0.5427 -1.3260 41 1 10.4449 -0.6193 0.0215 42 1 10.7779 -2.4744 -1.5894 43 1 10.7297 -1.3129 -2.9372 44 1 13.6674 -3.4090 -3.6720 45 1 6.1769 -0.9452 -1.2814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165148279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:09 Heat of formation + Delta-G solvation = -71.429457 kcal Electronic energy + Delta-G solvation = -22901.964115 eV Core-core repulsion = 19498.399262 eV Total energy + Delta-G solvation = -3403.564853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92042 -39.08845 -37.52300 -35.45649 -33.31502 -32.18779 -30.79054 -30.19035 -28.98326 -27.98785 -27.06764 -24.97348 -23.90139 -22.55302 -22.10561 -20.69197 -20.09064 -18.12797 -17.01539 -16.69976 -16.14460 -15.72232 -15.51000 -15.23554 -15.20144 -14.94734 -14.61891 -14.28579 -13.97542 -13.37009 -13.27255 -13.03868 -12.87504 -12.69175 -12.43089 -12.27986 -12.08433 -12.03856 -11.57576 -11.46821 -11.35088 -11.07934 -11.02961 -10.87063 -10.70401 -10.38621 -10.06393 -9.91400 -9.65258 -9.59555 -9.24785 -8.41141 -7.87663 -7.23790 -6.06320 -4.10565 1.78780 1.94429 3.18641 3.30281 3.36003 3.39031 3.45417 4.07523 4.18893 4.30949 4.46449 4.60114 4.69018 4.92700 4.95516 4.99001 5.13648 5.22382 5.27582 5.30008 5.34323 5.39967 5.42287 5.51302 5.61698 5.67984 5.71639 5.85225 5.87679 6.09371 6.13429 6.15023 6.20293 6.48481 6.68148 6.71447 6.77065 6.84190 6.96522 7.47839 7.57734 7.70211 7.79370 7.88823 8.17882 8.29674 8.95177 9.53393 11.05321 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.002382 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.788948 B =11752.335878 C =12203.713801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.077 3.923 4 H 0.071 0.929 5 C -0.174 4.174 6 C 0.157 3.843 7 H 0.089 0.911 8 C -0.167 4.167 9 N -0.736 5.736 10 C 0.250 3.750 11 C -0.248 4.248 12 C -0.037 4.037 13 C -0.266 4.266 14 C 0.188 3.812 15 O -0.317 6.317 16 C 0.067 3.933 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.239 4.239 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.368 10.615 8.714 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.019 3.981 4 H 0.089 0.911 5 C -0.231 4.231 6 C 0.051 3.949 7 H 0.106 0.894 8 C -0.226 4.226 9 N -0.367 5.367 10 C 0.147 3.853 11 C -0.270 4.270 12 C -0.056 4.056 13 C -0.287 4.287 14 C 0.140 3.860 15 O -0.229 6.229 16 C -0.007 4.007 17 C -0.013 4.013 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.262 4.262 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.238 0.762 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.317 10.277 8.555 28.632 hybrid contribution 0.794 0.229 -0.024 0.827 sum -24.523 10.506 8.531 28.009 Atomic orbital electron populations 1.22780 0.81110 1.02817 0.99800 1.87934 1.19550 1.27330 1.95045 1.22464 0.94199 0.85200 0.96218 0.91137 1.22244 1.02271 1.02204 0.96404 1.20991 0.87424 0.95388 0.91122 0.89363 1.22226 1.02139 1.02259 0.95974 1.44570 1.01645 1.39876 1.50579 1.17359 0.83177 0.92397 0.92318 1.20389 0.95567 1.03698 1.07362 1.20603 0.92394 0.96647 0.95920 1.21127 1.00574 1.01795 1.05189 1.18822 0.89666 0.88595 0.88900 1.86144 1.18642 1.55341 1.62810 1.23300 0.75582 1.00969 1.00889 1.19128 0.92842 0.94193 0.95091 1.20984 0.90291 1.18175 1.26852 0.92353 1.24996 0.99353 0.94948 0.94968 1.69978 1.34205 1.20726 1.27915 0.86488 0.84603 0.78672 0.77621 1.20517 1.21088 1.19764 1.19664 0.90178 1.06791 1.09588 0.94141 0.89617 0.94092 0.92567 0.91414 0.91139 0.91899 0.92506 0.91434 0.76154 0.86725 0.86489 0.85687 0.93123 0.93129 0.95442 0.95444 0.92750 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.17 9.20 -35.23 -0.32 -3.49 16 3 C 0.08 0.56 2.52 -26.74 -0.07 0.49 16 4 H 0.07 0.39 7.79 -51.93 -0.40 -0.01 16 5 C -0.17 -1.27 9.31 37.16 0.35 -0.92 16 6 C 0.16 1.33 2.17 -67.93 -0.15 1.18 16 7 H 0.09 0.71 6.48 -51.93 -0.34 0.37 16 8 C -0.17 -1.40 9.23 37.16 0.34 -1.06 16 9 N -0.74 -7.96 4.48 -52.18 -0.23 -8.20 16 10 C 0.25 3.41 6.63 -83.81 -0.56 2.86 16 11 C -0.25 -3.21 8.85 -39.35 -0.35 -3.56 16 12 C -0.04 -0.51 10.03 -39.63 -0.40 -0.91 16 13 C -0.27 -4.45 9.04 -39.39 -0.36 -4.81 16 14 C 0.19 3.50 6.68 -39.24 -0.26 3.23 16 15 O -0.32 -6.86 10.13 -19.40 -0.20 -7.06 16 16 C 0.07 1.49 4.68 37.16 0.17 1.66 16 17 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.24 -3.89 9.83 -39.24 -0.39 -4.28 16 27 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.62 7.13 -51.93 -0.37 0.25 16 33 H 0.06 0.60 7.71 -51.93 -0.40 0.19 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 36 H 0.40 4.35 7.87 -40.82 -0.32 4.03 16 37 H 0.11 1.22 6.11 -52.49 -0.32 0.90 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 40 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -31.24 366.61 -8.05 -39.29 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.41 Total: 1.46 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.12 Total: -17.93 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.50 Total: -34.33 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.52 Total: -10.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.24 -8.05 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165148279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.142 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds