Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 H 1.09001 * 109.46576 * 30.00130 * 3 2 1 5 5 C 1.52999 * 109.46901 * 269.99899 * 3 2 1 6 6 C 1.52991 * 109.46955 * 149.99745 * 3 2 1 7 7 H 1.09003 * 109.46813 * 184.99984 * 6 3 2 8 8 C 1.53002 * 109.47536 * 305.00062 * 6 3 2 9 9 N 1.46505 * 109.47343 * 65.00547 * 6 3 2 10 10 C 1.39660 * 120.00172 * 154.99752 * 9 6 3 11 11 C 1.38972 * 120.04873 * 359.97438 * 10 9 6 12 12 C 1.38120 * 120.03773 * 180.02562 * 11 10 9 13 13 C 1.38217 * 120.12663 * 0.28148 * 12 11 10 14 14 C 1.38775 * 120.09286 * 359.43840 * 13 12 11 15 15 O 1.35891 * 120.01984 * 180.25661 * 14 13 12 16 16 C 1.42899 * 116.99896 * 0.30308 * 15 14 13 17 17 C 1.53002 * 109.47266 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47288 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00325 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99859 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47073 * 90.00396 * 22 20 18 24 24 H 1.48498 * 109.46975 * 210.00121 * 22 20 18 25 25 H 1.48494 * 109.47298 * 330.00482 * 22 20 18 26 26 C 1.38614 * 119.95978 * 0.56135 * 14 13 12 27 27 H 1.09004 * 109.46892 * 59.99898 * 1 2 3 28 28 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47375 * 300.00305 * 1 2 3 30 30 H 1.09007 * 109.47292 * 60.00248 * 5 3 2 31 31 H 1.08999 * 109.46516 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.47167 * 299.99901 * 5 3 2 33 33 H 1.09003 * 109.46949 * 180.02562 * 8 6 3 34 34 H 1.08999 * 109.47117 * 300.00051 * 8 6 3 35 35 H 1.08997 * 109.46713 * 59.99977 * 8 6 3 36 36 H 0.96999 * 119.99410 * 334.99056 * 9 6 3 37 37 H 1.07998 * 119.98425 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.93398 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.95468 * 179.70439 * 13 12 11 40 40 H 1.09001 * 109.47212 * 299.99273 * 16 15 14 41 41 H 1.08999 * 109.47280 * 59.99875 * 16 15 14 42 42 H 1.08998 * 109.47436 * 300.00269 * 17 16 15 43 43 H 1.09005 * 109.47097 * 59.99485 * 17 16 15 44 44 H 0.97005 * 120.00135 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.06243 * 179.74355 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3588 1.2632 0.7213 7 1 3.7608 2.2734 0.7995 8 6 3.1696 0.6797 2.1229 9 7 4.2913 0.4239 -0.0353 10 6 5.6680 0.6233 0.0880 11 6 6.1547 1.6179 0.9278 12 6 7.5163 1.8152 1.0492 13 6 8.3979 1.0286 0.3321 14 6 7.9181 0.0300 -0.5036 15 8 8.7864 -0.7460 -1.2040 16 6 10.1797 -0.4827 -1.0269 17 6 10.9949 -1.4490 -1.8887 18 6 12.4642 -1.1710 -1.7024 19 1 12.7847 -0.3841 -1.0357 20 6 13.3995 -1.9220 -2.3824 21 7 13.0094 -2.8805 -3.1939 22 14 15.2209 -1.5778 -2.1509 23 1 15.7414 -2.4000 -1.0291 24 1 15.9518 -1.9214 -3.3971 25 1 15.4175 -0.1386 -1.8426 26 6 6.5523 -0.1713 -0.6283 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.2568 1.8015 -1.9564 31 1 2.6606 2.7673 -1.4424 32 1 2.8829 1.0774 -1.9563 33 1 4.1304 0.6500 2.6369 34 1 2.4759 1.3042 2.6859 35 1 2.7676 -0.3304 2.0446 36 1 3.9523 -0.2703 -0.6219 37 1 5.4678 2.2375 1.4852 38 1 7.8926 2.5889 1.7020 39 1 9.4619 1.1884 0.4255 40 1 10.3966 0.5427 -1.3260 41 1 10.4449 -0.6193 0.0215 42 1 10.7779 -2.4744 -1.5894 43 1 10.7297 -1.3129 -2.9372 44 1 13.6674 -3.4090 -3.6720 45 1 6.1769 -0.9452 -1.2814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165148279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = -90.167664 kcal Electronic energy + Delta-G solvation = -22902.776665 eV Core-core repulsion = 19498.399262 eV Total energy + Delta-G solvation = -3404.377402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08584 -39.98871 -38.66265 -36.41797 -35.41898 -33.06246 -32.53052 -31.09401 -30.28809 -29.04639 -27.51973 -26.95018 -24.60930 -23.83027 -23.46071 -22.09594 -21.12171 -19.40279 -18.39949 -17.73766 -17.37954 -16.94198 -16.89661 -16.56344 -16.32675 -16.09090 -15.77483 -15.38824 -14.75659 -14.44669 -14.32727 -14.22244 -14.13861 -13.93704 -13.59409 -13.36693 -13.17781 -13.02749 -12.78890 -12.65548 -12.53697 -12.48856 -12.29826 -12.02561 -11.87161 -11.66315 -11.61268 -11.53699 -11.37118 -10.85290 -10.61643 -10.52325 -9.19859 -8.29211 -8.26087 -6.39893 0.60314 0.73249 1.41107 1.43871 1.55080 2.18221 2.40446 2.70900 2.91665 3.00466 3.08064 3.70502 3.99142 4.02950 4.16642 4.26120 4.27801 4.29703 4.37275 4.45336 4.50697 4.51622 4.55374 4.65104 4.70423 4.75777 4.77603 4.83958 4.90674 4.91207 5.00458 5.08760 5.29618 5.31641 5.35753 5.43553 5.47435 5.55254 5.66971 5.69445 5.79369 6.07849 6.25489 6.50009 6.64651 6.74945 6.83326 7.30068 8.87218 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.002382 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.788948 B =11752.335878 C =12203.713801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.080 3.920 4 H 0.095 0.905 5 C -0.173 4.173 6 C 0.151 3.849 7 H 0.102 0.898 8 C -0.162 4.162 9 N -0.729 5.729 10 C 0.258 3.742 11 C -0.237 4.237 12 C -0.031 4.031 13 C -0.284 4.284 14 C 0.152 3.848 15 O -0.344 6.344 16 C 0.087 3.913 17 C 0.028 3.972 18 C -0.545 4.545 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.978 3.022 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.257 4.257 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.402 0.598 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.003 1.003 43 H -0.003 1.003 44 H 0.267 0.733 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.392 13.088 10.649 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.022 3.978 4 H 0.113 0.887 5 C -0.230 4.230 6 C 0.046 3.954 7 H 0.120 0.880 8 C -0.221 4.221 9 N -0.357 5.357 10 C 0.153 3.847 11 C -0.259 4.259 12 C -0.049 4.049 13 C -0.305 4.305 14 C 0.106 3.894 15 O -0.258 6.258 16 C 0.013 3.987 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.199 4.199 21 N -0.571 5.571 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.183 1.183 26 C -0.280 4.280 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.237 0.763 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -26.402 12.766 10.507 31.152 hybrid contribution 0.860 -0.530 -0.601 1.176 sum -25.542 12.236 9.906 30.004 Atomic orbital electron populations 1.22920 0.79838 1.03416 1.00788 1.87911 1.21051 1.28079 1.95161 1.22479 0.93816 0.85395 0.96060 0.88683 1.22233 1.02309 1.01931 0.96543 1.21264 0.87633 0.95403 0.91071 0.88000 1.22170 1.02070 1.01961 0.95866 1.44743 1.00911 1.39838 1.50231 1.17431 0.84053 0.91751 0.91467 1.20764 0.95841 1.02995 1.06339 1.20968 0.92399 0.96357 0.95185 1.21206 1.00998 1.02286 1.05975 1.19147 0.89877 0.89877 0.90490 1.86052 1.18300 1.57012 1.64455 1.22833 0.76139 0.99720 1.00055 1.18975 0.93943 0.93825 0.94191 1.21398 0.90996 1.18671 1.27232 0.91074 1.26078 1.05040 0.94441 0.94315 1.70128 1.36222 1.21848 1.28908 0.85255 0.77571 0.79247 0.77801 1.19503 1.20613 1.18253 1.19762 0.89933 1.07712 1.10634 0.93451 0.89373 0.92729 0.91756 0.90807 0.93149 0.92916 0.90138 0.92882 0.76301 0.83446 0.83190 0.86124 0.92233 0.92295 0.98462 0.98415 0.92441 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -5.99 9.20 -148.98 -1.37 -7.37 16 3 C 0.08 0.95 2.52 30.59 0.08 1.02 16 4 H 0.10 0.69 7.79 -2.39 -0.02 0.67 16 5 C -0.17 -2.19 9.31 71.98 0.67 -1.52 16 6 C 0.15 2.14 2.17 44.99 0.10 2.23 16 7 H 0.10 1.20 6.48 -2.39 -0.02 1.19 16 8 C -0.16 -2.26 9.23 71.98 0.66 -1.60 16 9 N -0.73 -14.78 4.48 -319.01 -1.43 -16.21 16 10 C 0.26 6.75 6.63 38.20 0.25 7.00 16 11 C -0.24 -5.47 8.85 22.42 0.20 -5.27 16 12 C -0.03 -0.78 10.03 22.24 0.22 -0.55 16 13 C -0.28 -9.41 9.04 22.39 0.20 -9.21 16 14 C 0.15 5.85 6.68 22.49 0.15 6.00 16 15 O -0.34 -15.79 10.13 -92.32 -0.94 -16.73 16 16 C 0.09 4.05 4.68 71.98 0.34 4.38 16 17 C 0.03 1.59 5.34 29.85 0.16 1.75 16 18 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 19 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 20 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 21 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 22 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 26 C -0.26 -8.60 9.83 22.49 0.22 -8.38 16 27 H 0.05 0.37 7.87 -2.39 -0.02 0.35 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.35 8.08 -2.39 -0.02 0.33 16 30 H 0.06 0.70 7.87 -2.38 -0.02 0.68 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.84 7.13 -2.39 -0.02 0.82 16 33 H 0.05 0.85 7.71 -2.39 -0.02 0.83 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.91 7.56 -2.39 -0.02 0.89 16 36 H 0.40 8.52 7.87 -92.71 -0.73 7.79 16 37 H 0.15 2.44 6.11 -2.91 -0.02 2.42 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.12 4.00 6.29 -2.91 -0.02 3.99 16 40 H 0.06 2.62 7.65 -2.39 -0.02 2.60 16 41 H 0.06 2.59 7.67 -2.39 -0.02 2.58 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 45 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -70.14 366.61 3.99 -66.15 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.24 Total: 19.07 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 5.18 Total: -33.64 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.14 Total: -73.83 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -2.31 Total: -24.09 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.14 3.99 -66.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165148279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.017 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds