Wall clock time and date at job start Tue Mar 31 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00211 * 2 1 4 4 H 1.09002 * 109.46842 * 330.00387 * 3 2 1 5 5 C 1.52992 * 109.46831 * 90.00014 * 3 2 1 6 6 C 1.52997 * 109.47321 * 210.00398 * 3 2 1 7 7 H 1.09002 * 109.47153 * 299.99798 * 6 3 2 8 8 C 1.53000 * 109.47060 * 60.00117 * 6 3 2 9 9 N 1.46500 * 109.47007 * 179.97438 * 6 3 2 10 10 C 1.39663 * 119.99972 * 154.99721 * 9 6 3 11 11 C 1.38970 * 120.04699 * 0.02562 * 10 9 6 12 12 C 1.38118 * 120.03665 * 179.97438 * 11 10 9 13 13 C 1.38215 * 120.13043 * 0.02562 * 12 11 10 14 14 C 1.38771 * 120.08772 * 0.02562 * 13 12 11 15 15 O 1.35905 * 120.01693 * 179.97438 * 14 13 12 16 16 C 1.42899 * 116.99756 * 0.02562 * 15 14 13 17 17 C 1.52993 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47157 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99881 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99976 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99984 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46894 * 89.99702 * 22 20 18 24 24 H 1.48498 * 109.46767 * 209.99696 * 22 20 18 25 25 H 1.48497 * 109.47185 * 329.99535 * 22 20 18 26 26 C 1.38616 * 119.96628 * 359.70932 * 14 13 12 27 27 H 1.09001 * 109.47259 * 59.99430 * 1 2 3 28 28 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46718 * 299.99619 * 1 2 3 30 30 H 1.09002 * 109.47103 * 60.00533 * 5 3 2 31 31 H 1.09001 * 109.47066 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47747 * 300.00121 * 5 3 2 33 33 H 1.09004 * 109.46724 * 180.02562 * 8 6 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 8 6 3 35 35 H 1.08992 * 109.47399 * 59.99823 * 8 6 3 36 36 H 0.97004 * 120.00223 * 334.99863 * 9 6 3 37 37 H 1.08006 * 119.98508 * 359.97438 * 11 10 9 38 38 H 1.08005 * 119.93706 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.95763 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47374 * 299.99738 * 16 15 14 41 41 H 1.09007 * 109.47134 * 59.99479 * 16 15 14 42 42 H 1.09001 * 109.47425 * 299.99567 * 17 16 15 43 43 H 1.08998 * 109.47510 * 59.99927 * 17 16 15 44 44 H 0.97002 * 120.00056 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.06194 * 180.31788 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.3589 1.2633 -0.7213 7 1 4.0242 0.5694 -0.2075 8 6 3.1514 0.7975 -2.1638 9 7 3.9545 2.6018 -0.7218 10 6 5.3392 2.7499 -0.8273 11 6 6.1530 1.6283 -0.9324 12 6 7.5223 1.7751 -1.0373 13 6 8.0869 3.0366 -1.0374 14 6 7.2794 4.1602 -0.9317 15 8 7.8361 5.4000 -0.9315 16 6 9.2588 5.4723 -1.0439 17 6 9.6980 6.9377 -1.0266 18 6 11.1984 7.0139 -1.1446 19 1 11.7805 6.1078 -1.2243 20 6 11.8280 8.2406 -1.1517 21 7 13.1374 8.3072 -1.2551 22 14 10.8210 9.8080 -1.0145 23 1 10.6669 10.1736 0.4166 24 1 11.5146 10.9064 -1.7341 25 1 9.4814 9.5901 -1.6169 26 6 5.9042 4.0176 -0.8318 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.8830 1.0774 1.9562 31 1 2.6607 2.7672 1.4425 32 1 1.2570 1.8014 1.9563 33 1 4.1123 0.7670 -2.6775 34 1 2.7080 -0.1983 -2.1639 35 1 2.4861 1.4913 -2.6776 36 1 3.3871 3.3852 -0.6488 37 1 5.7145 0.6413 -0.9321 38 1 8.1532 0.9023 -1.1193 39 1 9.1580 3.1481 -1.1192 40 1 9.7167 4.9456 -0.2067 41 1 9.5733 5.0100 -1.9797 42 1 9.2402 7.4642 -1.8642 43 1 9.3835 7.4003 -0.0911 44 1 13.5803 9.1701 -1.2598 45 1 5.2739 4.8912 -0.7546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165148491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:12 Heat of formation + Delta-G solvation = -67.642471 kcal Electronic energy + Delta-G solvation = -22827.828935 eV Core-core repulsion = 19424.428298 eV Total energy + Delta-G solvation = -3403.400637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99889 -39.14497 -37.71296 -35.66168 -33.30647 -32.21426 -31.06535 -30.33456 -29.23753 -28.13449 -27.07661 -25.18307 -23.85451 -22.71177 -21.94886 -20.65847 -20.22934 -18.28194 -17.10824 -16.84767 -16.54279 -15.76359 -15.59207 -15.37389 -15.29177 -15.08248 -14.55343 -14.19416 -13.94036 -13.44186 -13.39708 -13.30647 -12.96377 -12.86117 -12.57359 -12.46927 -12.13409 -12.07495 -11.74821 -11.61966 -11.56063 -11.27424 -10.92736 -10.83077 -10.68114 -10.21334 -10.14049 -10.00066 -9.84321 -9.72246 -9.31780 -8.60646 -8.00455 -7.36629 -6.11681 -4.12245 1.69158 1.83928 2.82938 3.29731 3.36814 3.42553 3.61960 3.97205 4.09188 4.26108 4.40651 4.52212 4.64025 4.86104 4.90591 5.01364 5.07144 5.17663 5.22435 5.23497 5.32811 5.34861 5.39622 5.49142 5.52080 5.60873 5.65998 5.77451 5.81228 5.98436 5.99041 6.01242 6.08170 6.37315 6.47932 6.59699 6.69613 6.74918 6.84430 7.09558 7.26356 7.35331 7.60219 7.66292 8.01120 8.41120 8.89514 9.48714 11.00844 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035436 B = 0.002407 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.956694 B =11628.524858 C =12091.401555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.081 3.919 4 H 0.063 0.937 5 C -0.174 4.174 6 C 0.155 3.845 7 H 0.088 0.912 8 C -0.166 4.166 9 N -0.741 5.741 10 C 0.250 3.750 11 C -0.242 4.242 12 C -0.036 4.036 13 C -0.262 4.262 14 C 0.186 3.814 15 O -0.321 6.321 16 C 0.074 3.926 17 C -0.009 4.009 18 C -0.526 4.526 19 H 0.075 0.925 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.237 4.237 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.397 0.603 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.265 0.735 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.543 -16.679 1.904 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.022 3.978 4 H 0.081 0.919 5 C -0.231 4.231 6 C 0.049 3.951 7 H 0.106 0.894 8 C -0.225 4.225 9 N -0.372 5.372 10 C 0.148 3.852 11 C -0.264 4.264 12 C -0.055 4.055 13 C -0.283 4.283 14 C 0.138 3.862 15 O -0.234 6.234 16 C 0.000 4.000 17 C -0.047 4.047 18 C -0.563 4.563 19 H 0.093 0.907 20 C -0.131 4.131 21 N -0.536 5.536 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.260 4.260 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.231 0.769 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.405 -16.724 1.910 30.475 hybrid contribution -0.606 1.276 0.104 1.417 sum -26.011 -15.448 2.013 30.319 Atomic orbital electron populations 1.22803 0.80818 1.02879 1.00004 1.87886 1.19753 1.27012 1.95087 1.22259 0.94456 0.85069 0.96010 0.91878 1.22273 1.02236 1.02398 0.96238 1.20738 0.93146 0.85264 0.95980 0.89364 1.22240 1.02466 1.01597 0.96148 1.44459 1.03538 1.06642 1.82604 1.17273 0.82937 0.92806 0.92190 1.20466 0.93571 0.96881 1.15501 1.20645 0.94050 0.96454 0.94351 1.21172 1.00412 0.92424 1.14256 1.18765 0.91809 0.84604 0.90973 1.86092 1.25654 1.25019 1.86593 1.23060 0.75017 1.01496 1.00466 1.19588 0.97277 0.90021 0.97797 1.20853 0.88991 0.94774 1.51730 0.90716 1.24941 0.94834 0.99115 0.94191 1.69895 1.08119 1.25511 1.50088 0.86754 0.80930 0.82872 0.78688 1.20084 1.21208 1.18765 1.19630 0.92685 0.95844 1.17883 0.93959 0.89459 0.94031 0.91514 0.91055 0.92528 0.91801 0.91255 0.92782 0.76875 0.86437 0.86245 0.85458 0.92477 0.92458 0.95464 0.95896 0.92482 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.04 9.67 -35.23 -0.34 -3.38 16 3 C 0.08 0.59 2.35 -26.74 -0.06 0.52 16 4 H 0.06 0.40 7.79 -51.93 -0.40 -0.01 16 5 C -0.17 -1.26 9.37 37.15 0.35 -0.91 16 6 C 0.15 1.30 2.06 -67.93 -0.14 1.16 16 7 H 0.09 0.82 6.48 -51.93 -0.34 0.49 16 8 C -0.17 -1.36 9.28 37.16 0.34 -1.02 16 9 N -0.74 -7.03 4.55 -52.19 -0.24 -7.27 16 10 C 0.25 3.16 6.63 -83.82 -0.56 2.61 16 11 C -0.24 -3.04 8.84 -39.35 -0.35 -3.38 16 12 C -0.04 -0.49 10.03 -39.63 -0.40 -0.88 16 13 C -0.26 -4.19 9.04 -39.39 -0.36 -4.54 16 14 C 0.19 3.23 6.68 -39.25 -0.26 2.97 16 15 O -0.32 -6.43 10.13 -19.44 -0.20 -6.63 16 16 C 0.07 1.55 4.68 37.15 0.17 1.73 16 17 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 18 C -0.53 -14.94 9.66 -34.44 -0.33 -15.28 16 19 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 22 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 C -0.24 -3.54 9.83 -39.24 -0.39 -3.92 16 27 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 32 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 34 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 3.23 8.40 -40.82 -0.34 2.88 16 37 H 0.12 1.26 6.11 -52.48 -0.32 0.94 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 39 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 40 H 0.06 1.16 7.66 -51.93 -0.40 0.77 16 41 H 0.06 1.17 7.66 -51.92 -0.40 0.77 16 42 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -31.22 364.36 -7.70 -38.92 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.42 Total: 0.52 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -1.10 Total: -18.06 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.54 Total: -33.92 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.54 Total: -10.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.22 -7.70 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165148491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.723 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds