Wall clock time and date at job start Tue Mar 31 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00211 * 2 1 4 4 H 1.09002 * 109.46842 * 330.00387 * 3 2 1 5 5 C 1.52992 * 109.46831 * 90.00014 * 3 2 1 6 6 C 1.52997 * 109.47321 * 210.00398 * 3 2 1 7 7 H 1.09002 * 109.47153 * 299.99798 * 6 3 2 8 8 C 1.53000 * 109.47060 * 60.00117 * 6 3 2 9 9 N 1.46500 * 109.47007 * 179.97438 * 6 3 2 10 10 C 1.39663 * 119.99972 * 154.99721 * 9 6 3 11 11 C 1.38970 * 120.04699 * 0.02562 * 10 9 6 12 12 C 1.38118 * 120.03665 * 179.97438 * 11 10 9 13 13 C 1.38215 * 120.13043 * 0.02562 * 12 11 10 14 14 C 1.38771 * 120.08772 * 0.02562 * 13 12 11 15 15 O 1.35905 * 120.01693 * 179.97438 * 14 13 12 16 16 C 1.42899 * 116.99756 * 0.02562 * 15 14 13 17 17 C 1.52993 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47157 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99881 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99976 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99984 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46894 * 89.99702 * 22 20 18 24 24 H 1.48498 * 109.46767 * 209.99696 * 22 20 18 25 25 H 1.48497 * 109.47185 * 329.99535 * 22 20 18 26 26 C 1.38616 * 119.96628 * 359.70932 * 14 13 12 27 27 H 1.09001 * 109.47259 * 59.99430 * 1 2 3 28 28 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46718 * 299.99619 * 1 2 3 30 30 H 1.09002 * 109.47103 * 60.00533 * 5 3 2 31 31 H 1.09001 * 109.47066 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47747 * 300.00121 * 5 3 2 33 33 H 1.09004 * 109.46724 * 180.02562 * 8 6 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 8 6 3 35 35 H 1.08992 * 109.47399 * 59.99823 * 8 6 3 36 36 H 0.97004 * 120.00223 * 334.99863 * 9 6 3 37 37 H 1.08006 * 119.98508 * 359.97438 * 11 10 9 38 38 H 1.08005 * 119.93706 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.95763 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47374 * 299.99738 * 16 15 14 41 41 H 1.09007 * 109.47134 * 59.99479 * 16 15 14 42 42 H 1.09001 * 109.47425 * 299.99567 * 17 16 15 43 43 H 1.08998 * 109.47510 * 59.99927 * 17 16 15 44 44 H 0.97002 * 120.00056 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.06194 * 180.31788 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.3589 1.2633 -0.7213 7 1 4.0242 0.5694 -0.2075 8 6 3.1514 0.7975 -2.1638 9 7 3.9545 2.6018 -0.7218 10 6 5.3392 2.7499 -0.8273 11 6 6.1530 1.6283 -0.9324 12 6 7.5223 1.7751 -1.0373 13 6 8.0869 3.0366 -1.0374 14 6 7.2794 4.1602 -0.9317 15 8 7.8361 5.4000 -0.9315 16 6 9.2588 5.4723 -1.0439 17 6 9.6980 6.9377 -1.0266 18 6 11.1984 7.0139 -1.1446 19 1 11.7805 6.1078 -1.2243 20 6 11.8280 8.2406 -1.1517 21 7 13.1374 8.3072 -1.2551 22 14 10.8210 9.8080 -1.0145 23 1 10.6669 10.1736 0.4166 24 1 11.5146 10.9064 -1.7341 25 1 9.4814 9.5901 -1.6169 26 6 5.9042 4.0176 -0.8318 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.8830 1.0774 1.9562 31 1 2.6607 2.7672 1.4425 32 1 1.2570 1.8014 1.9563 33 1 4.1123 0.7670 -2.6775 34 1 2.7080 -0.1983 -2.1639 35 1 2.4861 1.4913 -2.6776 36 1 3.3871 3.3852 -0.6488 37 1 5.7145 0.6413 -0.9321 38 1 8.1532 0.9023 -1.1193 39 1 9.1580 3.1481 -1.1192 40 1 9.7167 4.9456 -0.2067 41 1 9.5733 5.0100 -1.9797 42 1 9.2402 7.4642 -1.8642 43 1 9.3835 7.4003 -0.0911 44 1 13.5803 9.1701 -1.2598 45 1 5.2739 4.8912 -0.7546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165148491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:12 Heat of formation + Delta-G solvation = -86.627178 kcal Electronic energy + Delta-G solvation = -22828.652174 eV Core-core repulsion = 19424.428298 eV Total energy + Delta-G solvation = -3404.223875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11498 -39.98288 -38.75473 -36.59271 -35.37185 -33.05451 -32.89282 -31.18009 -30.38117 -29.11732 -27.52133 -27.03490 -24.57350 -23.81397 -23.24824 -21.98910 -21.34986 -19.55798 -18.73852 -17.66364 -17.59972 -16.94973 -16.91527 -16.42861 -16.36279 -16.09058 -15.83076 -15.40055 -14.85981 -14.67352 -14.44655 -14.37816 -14.09766 -14.03754 -13.78173 -13.37094 -13.27301 -13.11059 -12.78513 -12.66281 -12.52335 -12.28314 -12.23869 -12.15471 -11.96942 -11.75127 -11.62031 -11.49699 -11.40485 -10.95715 -10.81223 -10.54560 -9.22338 -8.35979 -8.34572 -6.41267 0.57640 0.69151 1.36138 1.37545 1.50554 2.01275 2.33524 2.52532 2.96062 3.00170 3.10307 3.66317 3.92875 3.99197 4.07718 4.24114 4.24744 4.26562 4.33962 4.42095 4.46781 4.50207 4.52377 4.62256 4.65863 4.69776 4.75618 4.82382 4.87779 4.89596 4.97502 5.06028 5.13592 5.24559 5.31075 5.32699 5.34825 5.50447 5.52330 5.65672 5.73180 6.16680 6.20651 6.37887 6.58799 6.64263 6.80729 7.23684 8.81128 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035436 B = 0.002407 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.956694 B =11628.524858 C =12091.401555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.085 3.915 4 H 0.077 0.923 5 C -0.172 4.172 6 C 0.154 3.846 7 H 0.082 0.918 8 C -0.161 4.161 9 N -0.728 5.728 10 C 0.259 3.741 11 C -0.237 4.237 12 C -0.034 4.034 13 C -0.282 4.282 14 C 0.154 3.846 15 O -0.336 6.336 16 C 0.089 3.911 17 C -0.006 4.006 18 C -0.537 4.537 19 H 0.041 0.959 20 C 0.012 3.988 21 N -0.942 5.942 22 Si 0.950 3.050 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.251 1.251 26 C -0.245 4.245 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.405 0.595 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.117 0.883 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.603 -17.206 2.072 33.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.027 3.973 4 H 0.095 0.905 5 C -0.230 4.230 6 C 0.049 3.951 7 H 0.100 0.900 8 C -0.219 4.219 9 N -0.359 5.359 10 C 0.154 3.846 11 C -0.259 4.259 12 C -0.053 4.053 13 C -0.303 4.303 14 C 0.107 3.893 15 O -0.250 6.250 16 C 0.014 3.986 17 C -0.044 4.044 18 C -0.575 4.575 19 H 0.060 0.940 20 C -0.186 4.186 21 N -0.582 5.582 22 Si 0.773 3.227 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.174 1.174 26 C -0.268 4.268 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.518 -17.277 2.082 33.408 hybrid contribution 0.239 1.237 0.055 1.261 sum -28.279 -16.040 2.137 32.581 Atomic orbital electron populations 1.22975 0.79449 1.03866 1.00773 1.87859 1.21291 1.27249 1.95179 1.22186 0.93937 0.85343 0.95856 0.90528 1.22256 1.02495 1.01935 0.96295 1.20810 0.93738 0.84224 0.96378 0.90022 1.22181 1.02047 1.02054 0.95645 1.44487 1.02405 1.07764 1.81225 1.17306 0.84317 0.92024 0.90913 1.20764 0.93264 0.97878 1.13985 1.20929 0.94895 0.96229 0.93249 1.21214 0.99990 0.93289 1.15784 1.19073 0.92920 0.83854 0.93415 1.86001 1.24313 1.26956 1.87686 1.22638 0.76331 0.99139 1.00481 1.19447 0.94671 0.92467 0.97767 1.21115 0.91042 0.93837 1.51472 0.94045 1.25899 0.95975 1.02990 0.93719 1.70028 1.10032 1.26740 1.51366 0.85662 0.79610 0.78132 0.79321 1.18917 1.20401 1.17435 1.19750 0.91815 0.97112 1.18160 0.93063 0.88491 0.93365 0.92669 0.91154 0.91591 0.92794 0.90707 0.92324 0.75841 0.84217 0.83784 0.86468 0.92534 0.92564 0.95416 0.95505 0.92099 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 113.37 1.23 1.43 16 2 O -0.40 -5.42 9.67 -148.98 -1.44 -6.86 16 3 C 0.09 1.02 2.35 30.59 0.07 1.10 16 4 H 0.08 0.73 7.79 -2.39 -0.02 0.71 16 5 C -0.17 -2.12 9.37 71.98 0.67 -1.45 16 6 C 0.15 2.21 2.06 44.99 0.09 2.30 16 7 H 0.08 1.32 6.48 -2.39 -0.02 1.31 16 8 C -0.16 -2.24 9.28 71.98 0.67 -1.57 16 9 N -0.73 -12.08 4.55 -319.02 -1.45 -13.54 16 10 C 0.26 6.06 6.63 38.20 0.25 6.32 16 11 C -0.24 -5.43 8.84 22.42 0.20 -5.23 16 12 C -0.03 -0.88 10.03 22.24 0.22 -0.65 16 13 C -0.28 -9.03 9.04 22.39 0.20 -8.83 16 14 C 0.15 5.35 6.68 22.49 0.15 5.50 16 15 O -0.34 -13.58 10.13 -92.48 -0.94 -14.52 16 16 C 0.09 3.82 4.68 71.98 0.34 4.16 16 17 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 18 C -0.54 -31.32 9.66 25.60 0.25 -31.08 16 19 H 0.04 2.61 7.99 -2.91 -0.02 2.59 16 20 C 0.01 0.72 5.47 84.66 0.46 1.18 16 21 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 22 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 23 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 26 C -0.24 -7.07 9.83 22.49 0.22 -6.85 16 27 H 0.05 0.32 8.09 -2.39 -0.02 0.30 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.32 7.87 -2.38 -0.02 0.30 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.87 7.45 -2.39 -0.02 0.85 16 32 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 33 H 0.05 0.87 7.70 -2.39 -0.02 0.85 16 34 H 0.07 0.98 7.68 -2.39 -0.02 0.96 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.41 5.55 8.40 -92.71 -0.78 4.77 16 37 H 0.14 2.59 6.11 -2.91 -0.02 2.57 16 38 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.12 3.89 6.29 -2.91 -0.02 3.87 16 40 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 41 H 0.06 2.38 7.66 -2.38 -0.02 2.36 16 42 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 43 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -67.70 364.36 3.65 -64.05 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.13 Total: 16.63 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 5.16 Total: -33.84 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.15 Total: -72.00 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -2.38 Total: -21.38 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -67.70 3.65 -64.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165148491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.574 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds