Wall clock time and date at job start Tue Mar 31 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99564 * 2 1 4 4 C 1.52999 * 109.46633 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47196 * 65.00238 * 4 3 2 6 6 C 1.35896 * 117.00441 * 179.97438 * 5 4 3 7 7 C 1.38759 * 120.05286 * 0.24917 * 6 5 4 8 8 C 1.38118 * 119.94512 * 180.31943 * 7 6 5 9 9 C 1.38296 * 120.05619 * 359.68306 * 8 7 6 10 10 C 1.38243 * 120.10905 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.05451 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02671 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47109 * 260.00473 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47380 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47182 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00285 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00214 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99912 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00442 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46852 * 60.00049 * 21 19 17 23 23 H 1.48493 * 109.47263 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47041 * 300.00151 * 21 19 17 25 25 H 1.08998 * 109.47585 * 59.99871 * 1 2 3 26 26 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47067 * 299.99783 * 1 2 3 28 28 H 1.08999 * 109.46884 * 60.00312 * 3 2 1 29 29 H 1.08998 * 109.46860 * 299.99771 * 3 2 1 30 30 H 1.08998 * 109.47306 * 305.00360 * 4 3 2 31 31 H 1.08999 * 109.46632 * 184.99788 * 4 3 2 32 32 H 1.08005 * 120.03045 * 0.02990 * 7 6 5 33 33 H 1.08001 * 119.97673 * 179.70488 * 8 7 6 34 34 H 1.08000 * 119.94496 * 180.02562 * 9 8 7 35 35 H 1.07995 * 119.97355 * 180.02562 * 10 9 8 36 36 H 1.08992 * 109.46894 * 140.00209 * 12 11 10 37 37 H 1.09004 * 109.47113 * 20.00359 * 12 11 10 38 38 H 1.00899 * 110.99484 * 303.95639 * 13 12 11 39 39 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 40 40 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 41 41 H 1.09007 * 109.47219 * 300.00436 * 15 14 13 42 42 H 1.09005 * 109.47157 * 59.99991 * 15 14 13 43 43 H 1.08999 * 109.46979 * 300.00363 * 16 15 14 44 44 H 1.08996 * 109.46919 * 59.99709 * 16 15 14 45 45 H 0.97000 * 120.00251 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3019 0.3989 -1.3843 7 6 6.1823 0.7908 -0.3860 8 6 7.5413 0.6120 -0.5560 9 6 8.0243 0.0368 -1.7172 10 6 7.1487 -0.3601 -2.7107 11 6 5.7884 -0.1823 -2.5459 12 6 4.8346 -0.6146 -3.6295 13 7 4.4310 0.5548 -4.4218 14 6 3.4994 0.1705 -5.4906 15 6 3.1022 1.4120 -6.2918 16 6 2.1314 1.0119 -7.4045 17 6 1.7407 2.2346 -8.1940 18 1 2.1440 3.2006 -7.9283 19 6 0.8674 2.1204 -9.2547 20 7 0.3757 0.9442 -9.5780 21 14 0.3825 3.6361 -10.2329 22 1 1.5959 4.2480 -10.8315 23 1 -0.5597 3.2477 -11.3130 24 1 -0.2738 4.6175 -9.3321 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9784 2.1766 0.0889 32 1 5.8057 1.2397 0.5213 33 1 8.2274 0.9212 0.2186 34 1 9.0872 -0.1026 -1.8481 35 1 7.5282 -0.8094 -3.6165 36 1 3.9530 -1.0690 -3.1775 37 1 5.3257 -1.3406 -4.2776 38 1 4.0313 1.2700 -3.8330 39 1 3.9817 -0.5498 -6.1514 40 1 2.6084 -0.2787 -5.0519 41 1 2.6198 2.1321 -5.6307 42 1 3.9930 1.8617 -6.7305 43 1 2.6134 0.2917 -8.0656 44 1 1.2407 0.5625 -6.9654 45 1 -0.2384 0.8637 -10.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177576155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:50 Heat of formation + Delta-G solvation = -74.366582 kcal Electronic energy + Delta-G solvation = -22954.436417 eV Core-core repulsion = 19550.744201 eV Total energy + Delta-G solvation = -3403.692216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41165 -38.34271 -37.25231 -36.20733 -33.65694 -32.11028 -31.12203 -30.39383 -29.41727 -26.64300 -26.54100 -24.48522 -23.87491 -22.18779 -21.71036 -21.21546 -19.98406 -18.30503 -17.08961 -16.42022 -16.36056 -16.06063 -15.70858 -15.42712 -15.17229 -14.91955 -14.52204 -14.46538 -14.06944 -13.76975 -13.42271 -12.97173 -12.81178 -12.49428 -12.39110 -12.03492 -11.81471 -11.74998 -11.60219 -11.41749 -11.21493 -11.09714 -10.81371 -10.74924 -10.50600 -10.44348 -9.97075 -9.60838 -9.31288 -9.04304 -8.91690 -8.28769 -8.26621 -7.95537 -5.94109 -3.95962 1.23590 1.36536 2.99403 3.37068 3.40887 3.43885 3.44177 3.65875 4.49567 4.51698 4.62983 4.73706 4.76393 4.85381 4.92724 4.96846 5.01637 5.12094 5.17770 5.22870 5.26006 5.38943 5.41358 5.49180 5.56691 5.64249 5.76496 5.92396 6.01713 6.05653 6.21442 6.36265 6.43636 6.50372 6.70541 6.82213 6.83812 6.86591 7.22547 7.29171 7.47983 7.74853 7.78989 7.92153 8.07111 8.50634 9.11192 9.67479 11.17369 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.003233 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.970024 B = 8659.266623 C =10230.335440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.063 3.937 5 O -0.303 6.303 6 C 0.135 3.865 7 C -0.212 4.212 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.064 4.064 11 C -0.105 4.105 12 C 0.104 3.896 13 N -0.684 5.684 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.339 0.661 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.016 0.984 44 H 0.013 0.987 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -1.843 24.113 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.016 4.016 4 C -0.013 4.013 5 O -0.216 6.216 6 C 0.089 3.911 7 C -0.231 4.231 8 C -0.104 4.104 9 C -0.178 4.178 10 C -0.083 4.083 11 C -0.106 4.106 12 C -0.025 4.025 13 N -0.315 5.315 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.643 -2.181 23.436 25.436 hybrid contribution -1.260 1.005 0.206 1.625 sum 8.383 -1.176 23.641 25.111 Atomic orbital electron populations 1.22777 0.80603 1.03092 1.00136 1.87953 1.20012 1.26950 1.95442 1.22582 0.91419 0.85978 1.01620 1.22822 0.93879 0.98089 0.86483 1.86158 1.19930 1.76691 1.38805 1.18878 0.82423 0.95633 0.94123 1.21165 0.94303 1.07866 0.99786 1.20883 0.94467 0.97571 0.97433 1.21036 0.99718 1.02462 0.94604 1.20924 0.91438 0.97452 0.98484 1.19268 0.94620 1.02720 0.93972 1.20693 0.96103 0.93484 0.92183 1.60666 1.45598 1.10527 1.14663 1.22121 0.92818 0.99308 0.92661 1.21611 0.99900 0.95111 0.97752 1.19059 0.93489 0.96722 0.92253 1.21235 1.26378 0.94308 1.13718 0.92755 1.25030 0.96264 0.95850 0.97399 1.69961 1.32077 1.22859 1.28778 0.86659 0.78353 0.83314 0.79673 1.20223 1.21340 1.20314 0.93525 0.89442 0.94168 0.91191 0.91686 0.91277 0.90442 0.85797 0.86110 0.86023 0.85232 0.94119 0.90560 0.84367 0.91544 0.95789 0.93819 0.92623 0.96569 0.96829 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.47 10.67 -40.08 -0.43 -4.89 16 3 C 0.06 0.55 6.32 37.16 0.23 0.79 16 4 C 0.06 0.58 5.12 37.16 0.19 0.77 16 5 O -0.30 -3.91 9.26 -24.27 -0.22 -4.13 16 6 C 0.14 1.72 6.65 -39.22 -0.26 1.46 16 7 C -0.21 -2.23 9.04 -39.43 -0.36 -2.59 16 8 C -0.09 -0.82 10.04 -39.60 -0.40 -1.22 16 9 C -0.16 -1.62 10.04 -39.56 -0.40 -2.02 16 10 C -0.06 -0.75 9.67 -39.60 -0.38 -1.13 16 11 C -0.10 -1.40 5.41 -104.47 -0.56 -1.96 16 12 C 0.10 1.52 5.47 -4.97 -0.03 1.50 16 13 N -0.68 -11.39 6.49 -115.06 -0.75 -12.14 16 14 C 0.06 1.12 5.69 -3.82 -0.02 1.10 16 15 C -0.11 -2.33 5.41 -26.73 -0.14 -2.47 16 16 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 17 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 31 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 32 H 0.12 1.01 6.30 -52.48 -0.33 0.68 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.34 8.04 -52.49 -0.42 0.92 16 36 H 0.04 0.63 7.86 -51.93 -0.41 0.22 16 37 H 0.08 1.05 8.00 -51.93 -0.42 0.64 16 38 H 0.34 5.64 8.64 -39.29 -0.34 5.31 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -33.19 375.87 -9.33 -42.53 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.75 Total: 0.64 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.57 Total: -17.90 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.01 Total: -39.02 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.65 Total: -9.03 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.19 -9.33 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177576155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.840 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds