Wall clock time and date at job start Tue Mar 31 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99564 * 2 1 4 4 C 1.52999 * 109.46633 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47196 * 65.00238 * 4 3 2 6 6 C 1.35896 * 117.00441 * 179.97438 * 5 4 3 7 7 C 1.38759 * 120.05286 * 0.24917 * 6 5 4 8 8 C 1.38118 * 119.94512 * 180.31943 * 7 6 5 9 9 C 1.38296 * 120.05619 * 359.68306 * 8 7 6 10 10 C 1.38243 * 120.10905 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.05451 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02671 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47109 * 260.00473 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47380 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47182 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00285 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00214 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99912 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00442 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46852 * 60.00049 * 21 19 17 23 23 H 1.48493 * 109.47263 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47041 * 300.00151 * 21 19 17 25 25 H 1.08998 * 109.47585 * 59.99871 * 1 2 3 26 26 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47067 * 299.99783 * 1 2 3 28 28 H 1.08999 * 109.46884 * 60.00312 * 3 2 1 29 29 H 1.08998 * 109.46860 * 299.99771 * 3 2 1 30 30 H 1.08998 * 109.47306 * 305.00360 * 4 3 2 31 31 H 1.08999 * 109.46632 * 184.99788 * 4 3 2 32 32 H 1.08005 * 120.03045 * 0.02990 * 7 6 5 33 33 H 1.08001 * 119.97673 * 179.70488 * 8 7 6 34 34 H 1.08000 * 119.94496 * 180.02562 * 9 8 7 35 35 H 1.07995 * 119.97355 * 180.02562 * 10 9 8 36 36 H 1.08992 * 109.46894 * 140.00209 * 12 11 10 37 37 H 1.09004 * 109.47113 * 20.00359 * 12 11 10 38 38 H 1.00899 * 110.99484 * 303.95639 * 13 12 11 39 39 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 40 40 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 41 41 H 1.09007 * 109.47219 * 300.00436 * 15 14 13 42 42 H 1.09005 * 109.47157 * 59.99991 * 15 14 13 43 43 H 1.08999 * 109.46979 * 300.00363 * 16 15 14 44 44 H 1.08996 * 109.46919 * 59.99709 * 16 15 14 45 45 H 0.97000 * 120.00251 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3019 0.3989 -1.3843 7 6 6.1823 0.7908 -0.3860 8 6 7.5413 0.6120 -0.5560 9 6 8.0243 0.0368 -1.7172 10 6 7.1487 -0.3601 -2.7107 11 6 5.7884 -0.1823 -2.5459 12 6 4.8346 -0.6146 -3.6295 13 7 4.4310 0.5548 -4.4218 14 6 3.4994 0.1705 -5.4906 15 6 3.1022 1.4120 -6.2918 16 6 2.1314 1.0119 -7.4045 17 6 1.7407 2.2346 -8.1940 18 1 2.1440 3.2006 -7.9283 19 6 0.8674 2.1204 -9.2547 20 7 0.3757 0.9442 -9.5780 21 14 0.3825 3.6361 -10.2329 22 1 1.5959 4.2480 -10.8315 23 1 -0.5597 3.2477 -11.3130 24 1 -0.2738 4.6175 -9.3321 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9784 2.1766 0.0889 32 1 5.8057 1.2397 0.5213 33 1 8.2274 0.9212 0.2186 34 1 9.0872 -0.1026 -1.8481 35 1 7.5282 -0.8094 -3.6165 36 1 3.9530 -1.0690 -3.1775 37 1 5.3257 -1.3406 -4.2776 38 1 4.0313 1.2700 -3.8330 39 1 3.9817 -0.5498 -6.1514 40 1 2.6084 -0.2787 -5.0519 41 1 2.6198 2.1321 -5.6307 42 1 3.9930 1.8617 -6.7305 43 1 2.6134 0.2917 -8.0656 44 1 1.2407 0.5625 -6.9654 45 1 -0.2384 0.8637 -10.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177576155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:49 Heat of formation + Delta-G solvation = -95.628132 kcal Electronic energy + Delta-G solvation = -22955.358387 eV Core-core repulsion = 19550.744201 eV Total energy + Delta-G solvation = -3404.614186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25112 -39.13354 -38.11566 -37.61678 -35.56429 -33.71496 -32.02995 -31.65088 -30.33239 -28.31737 -27.29643 -25.97257 -24.64166 -23.90893 -22.53612 -22.29354 -21.71556 -19.11604 -18.49034 -17.83087 -17.32093 -17.13461 -16.59362 -16.55317 -16.31689 -16.21366 -15.80572 -15.45735 -15.36734 -15.16632 -14.44740 -14.28592 -14.07011 -13.66307 -13.46610 -13.28409 -13.17448 -13.08608 -12.67869 -12.62005 -12.47214 -12.36856 -12.32693 -12.18245 -11.83218 -11.66727 -11.54888 -11.39283 -11.11597 -10.71107 -10.55318 -9.83845 -9.40022 -9.04608 -8.20027 -6.31635 0.39665 0.54051 1.39526 1.43451 1.51408 2.23861 2.41122 2.76362 2.79767 3.12586 3.43055 3.79571 3.87409 3.96047 4.08569 4.16382 4.23742 4.28765 4.32480 4.33287 4.44684 4.48143 4.48715 4.50630 4.59514 4.66846 4.70322 4.72925 4.82227 4.88342 4.97208 5.07252 5.10622 5.22245 5.40462 5.50445 5.55468 5.65780 5.73402 5.84523 5.91875 6.02074 6.13809 6.26293 6.40377 6.51049 6.84619 7.37408 8.91899 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.003233 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.970024 B = 8659.266623 C =10230.335440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.057 3.943 4 C 0.057 3.943 5 O -0.329 6.329 6 C 0.119 3.881 7 C -0.215 4.215 8 C -0.082 4.082 9 C -0.162 4.162 10 C -0.074 4.074 11 C -0.133 4.133 12 C 0.111 3.889 13 N -0.680 5.680 14 C 0.072 3.928 15 C -0.090 4.090 16 C 0.026 3.974 17 C -0.545 4.545 18 H 0.059 0.941 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.266 1.266 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.339 0.661 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.046 0.954 42 H 0.054 0.946 43 H -0.007 1.007 44 H -0.011 1.011 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -0.211 25.617 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.020 4.020 4 C -0.018 4.018 5 O -0.243 6.243 6 C 0.074 3.926 7 C -0.233 4.233 8 C -0.100 4.100 9 C -0.180 4.180 10 C -0.093 4.093 11 C -0.134 4.134 12 C -0.018 4.018 13 N -0.310 5.310 14 C -0.057 4.057 15 C -0.128 4.128 16 C -0.011 4.011 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.011 0.989 44 H 0.008 0.992 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.899 -0.547 24.961 27.242 hybrid contribution -1.624 0.464 -0.191 1.700 sum 9.275 -0.083 24.770 26.450 Atomic orbital electron populations 1.22893 0.79587 1.03648 1.00857 1.87907 1.21356 1.28578 1.95641 1.22772 0.91427 0.85241 1.02524 1.23086 0.93969 0.99205 0.85542 1.86126 1.20321 1.77271 1.40610 1.19080 0.82787 0.96145 0.94630 1.21476 0.94510 1.07354 0.99978 1.21315 0.94633 0.96169 0.97850 1.21368 1.00766 1.01667 0.94223 1.21111 0.91064 0.97680 0.99441 1.19258 0.95053 1.04884 0.94175 1.20627 0.96043 0.92610 0.92512 1.60633 1.44296 1.11455 1.14656 1.21849 0.93113 0.97598 0.93117 1.21358 0.98471 0.96397 0.96553 1.18956 0.93412 0.95618 0.93130 1.21660 1.26983 0.95091 1.14552 0.92238 1.26022 0.95984 0.99423 0.98516 1.70099 1.32580 1.25347 1.29420 0.85462 0.78340 0.78981 0.78037 1.19111 1.20675 1.19085 0.94296 0.89105 0.91888 0.88010 0.92914 0.90410 0.88200 0.83487 0.82991 0.83574 0.84624 0.95604 0.90117 0.84356 0.91617 0.96517 0.93503 0.92750 0.98902 0.99235 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.42 -9.62 10.67 -144.34 -1.54 -11.16 16 3 C 0.06 0.99 6.32 71.98 0.45 1.44 16 4 C 0.06 0.98 5.12 71.98 0.37 1.35 16 5 O -0.33 -8.49 9.26 -87.74 -0.81 -9.30 16 6 C 0.12 2.95 6.65 22.51 0.15 3.10 16 7 C -0.21 -4.03 9.04 22.37 0.20 -3.83 16 8 C -0.08 -1.33 10.04 22.26 0.22 -1.10 16 9 C -0.16 -2.89 10.04 22.28 0.22 -2.66 16 10 C -0.07 -1.66 9.67 22.25 0.22 -1.45 16 11 C -0.13 -3.52 5.41 -19.77 -0.11 -3.63 16 12 C 0.11 3.32 5.47 85.56 0.47 3.78 16 13 N -0.68 -22.98 6.49 -517.92 -3.36 -26.34 16 14 C 0.07 2.80 5.69 86.31 0.49 3.29 16 15 C -0.09 -4.03 5.41 30.60 0.17 -3.87 16 16 C 0.03 1.48 4.97 29.85 0.15 1.63 16 17 C -0.54 -32.37 9.11 25.60 0.23 -32.14 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 21 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.18 7.65 -2.39 -0.02 1.16 16 31 H 0.10 1.22 7.67 -2.39 -0.02 1.21 16 32 H 0.15 1.96 6.30 -2.91 -0.02 1.94 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.14 2.71 8.04 -2.91 -0.02 2.69 16 36 H 0.03 0.84 7.86 -2.39 -0.02 0.82 16 37 H 0.08 2.28 8.00 -2.38 -0.02 2.26 16 38 H 0.34 11.47 8.64 -89.69 -0.77 10.69 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -72.39 375.87 1.72 -70.67 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.18 Total: 19.01 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 4.95 Total: -32.03 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.08 Total: -84.54 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -2.35 Total: -20.46 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.39 1.72 -70.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177576155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.962 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds