Wall clock time and date at job start Tue Mar 31 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99433 * 2 1 4 4 C 1.53005 * 109.46989 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47217 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47372 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47584 * 179.97438 * 6 5 4 8 8 C 1.39664 * 120.00039 * 179.97438 * 7 6 5 9 9 C 1.38973 * 120.04703 * 359.97438 * 8 7 6 10 10 C 1.38116 * 120.03003 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 H 1.09003 * 109.46852 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47334 * 299.99618 * 1 2 3 27 27 H 1.09002 * 109.47425 * 60.00204 * 1 2 3 28 28 H 1.09000 * 109.46977 * 60.00449 * 3 2 1 29 29 H 1.08998 * 109.47654 * 299.99720 * 3 2 1 30 30 H 1.09006 * 109.47096 * 59.99972 * 4 3 2 31 31 H 1.08997 * 109.47335 * 300.00112 * 4 3 2 32 32 H 1.08997 * 109.47173 * 60.00115 * 5 4 3 33 33 H 1.09008 * 109.47399 * 300.00011 * 5 4 3 34 34 H 1.09006 * 109.47286 * 59.99638 * 6 5 4 35 35 H 1.09008 * 109.46600 * 300.00173 * 6 5 4 36 36 H 0.97000 * 119.99514 * 359.97438 * 7 6 5 37 37 H 1.07996 * 119.98339 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.92769 * 179.97438 * 10 9 8 39 39 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.06150 * 180.23058 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5826 0.0013 6 6 5.6828 2.4619 0.0013 7 7 6.2786 3.8002 0.0013 8 6 7.6676 3.9463 0.0018 9 6 8.4854 2.8227 0.0029 10 6 9.8590 2.9675 0.0040 11 6 10.4237 4.2290 -0.0013 12 6 9.6120 5.3546 0.0030 13 8 10.1689 6.5942 0.0026 14 6 11.5962 6.6643 0.0038 15 6 12.0349 8.1300 0.0038 16 6 13.5400 8.2040 0.0044 17 1 14.1252 7.2963 0.0045 18 6 14.1700 9.4304 0.0040 19 7 13.4573 10.5357 0.0034 20 14 16.0358 9.5221 0.0055 21 1 16.5988 8.1480 0.0066 22 1 16.4969 10.2446 -1.2072 23 1 16.4948 10.2465 1.2178 24 6 8.2331 5.2138 0.0019 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6884 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8574 0.6438 -0.8892 31 1 3.8567 0.6441 0.8908 32 1 3.8355 3.1232 0.8913 33 1 3.8363 3.1238 -0.8887 34 1 6.0046 1.9213 -0.8889 35 1 6.0044 1.9205 0.8911 36 1 5.7084 4.5849 0.0009 37 1 8.0467 1.8358 0.0029 38 1 10.4930 2.0931 0.0052 39 1 11.4981 4.3388 -0.0049 40 1 11.9835 6.1695 0.8945 41 1 11.9851 6.1683 -0.8855 42 1 11.6475 8.6252 -0.8867 43 1 11.6460 8.6258 0.8932 44 1 13.9006 11.3986 0.0027 45 1 7.5999 6.0887 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179277946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:09 Heat of formation + Delta-G solvation = -81.954374 kcal Electronic energy + Delta-G solvation = -21681.651767 eV Core-core repulsion = 18277.630519 eV Total energy + Delta-G solvation = -3404.021247 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73837 -38.56336 -37.84724 -36.00354 -33.74729 -33.28730 -30.86733 -30.03048 -28.93316 -27.78249 -26.37663 -24.96431 -23.55705 -22.63399 -21.74175 -21.18560 -20.27416 -17.93802 -16.88941 -16.82678 -16.30263 -16.22078 -15.64097 -15.57677 -15.28777 -15.22441 -15.20982 -14.61481 -14.16052 -13.92162 -13.36431 -12.86676 -12.85009 -12.65391 -12.32793 -12.29691 -12.26568 -11.80916 -11.54685 -11.47682 -11.43902 -11.17778 -11.13789 -10.89063 -10.70325 -10.41425 -10.17184 -9.97186 -9.69310 -9.61305 -9.24977 -8.42874 -7.91637 -7.31212 -6.07938 -4.12154 1.74415 1.90179 3.04708 3.28411 3.35360 3.39084 3.44611 4.04270 4.15103 4.39034 4.40483 4.44989 4.72787 4.77159 4.79243 4.88660 4.92785 5.06448 5.12846 5.17139 5.25612 5.28646 5.36265 5.39283 5.46280 5.57762 5.62882 5.74749 5.76512 5.81071 6.11211 6.12443 6.14952 6.43331 6.64738 6.65584 6.69977 6.78166 6.92011 7.39927 7.55139 7.68172 7.68488 7.86544 8.14754 8.27854 8.93812 9.52070 11.03737 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.057394 B = 0.001763 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.743022 B =15880.215994 C =16321.000674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.129 3.871 7 N -0.751 5.751 8 C 0.245 3.755 9 C -0.244 4.244 10 C -0.037 4.037 11 C -0.264 4.264 12 C 0.187 3.813 13 O -0.316 6.316 14 C 0.066 3.934 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.238 4.238 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.036 -19.881 -0.005 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.154 4.154 5 C -0.167 4.167 6 C 0.005 3.995 7 N -0.382 5.382 8 C 0.143 3.857 9 C -0.266 4.266 10 C -0.056 4.056 11 C -0.284 4.284 12 C 0.139 3.861 13 O -0.229 6.229 14 C -0.008 4.008 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.262 4.262 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.036 -19.854 -0.005 30.411 hybrid contribution 0.728 0.572 0.001 0.925 sum -22.308 -19.282 -0.004 29.486 Atomic orbital electron populations 1.22749 0.80871 1.02861 1.00040 1.87871 1.19855 1.28126 1.95445 1.22554 0.94082 0.84655 1.00325 1.21402 0.93012 0.97029 1.03913 1.21663 0.94673 0.97200 1.03115 1.21229 0.91921 0.84981 1.01388 1.44536 1.03015 1.07252 1.83380 1.17348 0.83192 0.92864 0.92307 1.20393 0.93438 0.96695 1.16117 1.20625 0.94052 0.96424 0.94501 1.21153 1.00231 0.92396 1.14660 1.18823 0.91871 0.84820 0.90590 1.86143 1.25417 1.24643 1.86709 1.23312 0.74818 1.02889 0.99762 1.19133 0.95930 0.87395 0.98823 1.21026 0.90677 0.92670 1.51944 0.92281 1.24990 0.98670 0.95593 0.94952 1.69992 1.35374 0.97526 1.49929 0.86434 0.85092 0.78209 0.77680 1.19616 1.20870 1.20864 1.19667 0.92639 0.95891 1.17955 0.89553 0.94018 0.94025 0.93210 0.93202 0.90672 0.90677 0.91030 0.91037 0.92217 0.92211 0.76747 0.86681 0.86346 0.85573 0.93091 0.93086 0.95435 0.95429 0.92810 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.15 10.70 -35.23 -0.38 -3.52 16 3 C 0.06 0.37 5.94 37.16 0.22 0.59 16 4 C -0.12 -0.67 5.58 -26.73 -0.15 -0.82 16 5 C -0.13 -0.73 5.33 -26.73 -0.14 -0.87 16 6 C 0.13 1.00 4.91 -4.04 -0.02 0.98 16 7 N -0.75 -7.60 5.73 -58.65 -0.34 -7.93 16 8 C 0.25 3.33 6.65 -83.81 -0.56 2.77 16 9 C -0.24 -3.21 9.31 -39.35 -0.37 -3.57 16 10 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 11 C -0.26 -4.39 9.04 -39.39 -0.36 -4.74 16 12 C 0.19 3.44 6.68 -39.24 -0.26 3.17 16 13 O -0.32 -6.77 10.13 -19.42 -0.20 -6.96 16 14 C 0.07 1.46 4.68 37.16 0.17 1.64 16 15 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 20 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.24 -3.81 9.83 -39.24 -0.39 -4.19 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 35 H 0.06 0.47 7.95 -51.92 -0.41 0.06 16 36 H 0.40 3.48 8.48 -40.82 -0.35 3.14 16 37 H 0.12 1.25 6.73 -52.49 -0.35 0.90 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 40 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -31.92 374.06 -8.94 -40.86 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.69 Total: -0.82 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.69 Total: -17.72 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.40 Total: -33.89 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.57 Total: -10.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.92 -8.94 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179277946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.096 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds