Wall clock time and date at job start Tue Mar 31 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99433 * 2 1 4 4 C 1.53005 * 109.46989 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47217 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47372 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47584 * 179.97438 * 6 5 4 8 8 C 1.39664 * 120.00039 * 179.97438 * 7 6 5 9 9 C 1.38973 * 120.04703 * 359.97438 * 8 7 6 10 10 C 1.38116 * 120.03003 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 H 1.09003 * 109.46852 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47334 * 299.99618 * 1 2 3 27 27 H 1.09002 * 109.47425 * 60.00204 * 1 2 3 28 28 H 1.09000 * 109.46977 * 60.00449 * 3 2 1 29 29 H 1.08998 * 109.47654 * 299.99720 * 3 2 1 30 30 H 1.09006 * 109.47096 * 59.99972 * 4 3 2 31 31 H 1.08997 * 109.47335 * 300.00112 * 4 3 2 32 32 H 1.08997 * 109.47173 * 60.00115 * 5 4 3 33 33 H 1.09008 * 109.47399 * 300.00011 * 5 4 3 34 34 H 1.09006 * 109.47286 * 59.99638 * 6 5 4 35 35 H 1.09008 * 109.46600 * 300.00173 * 6 5 4 36 36 H 0.97000 * 119.99514 * 359.97438 * 7 6 5 37 37 H 1.07996 * 119.98339 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.92769 * 179.97438 * 10 9 8 39 39 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.06150 * 180.23058 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5826 0.0013 6 6 5.6828 2.4619 0.0013 7 7 6.2786 3.8002 0.0013 8 6 7.6676 3.9463 0.0018 9 6 8.4854 2.8227 0.0029 10 6 9.8590 2.9675 0.0040 11 6 10.4237 4.2290 -0.0013 12 6 9.6120 5.3546 0.0030 13 8 10.1689 6.5942 0.0026 14 6 11.5962 6.6643 0.0038 15 6 12.0349 8.1300 0.0038 16 6 13.5400 8.2040 0.0044 17 1 14.1252 7.2963 0.0045 18 6 14.1700 9.4304 0.0040 19 7 13.4573 10.5357 0.0034 20 14 16.0358 9.5221 0.0055 21 1 16.5988 8.1480 0.0066 22 1 16.4969 10.2446 -1.2072 23 1 16.4948 10.2465 1.2178 24 6 8.2331 5.2138 0.0019 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6884 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8574 0.6438 -0.8892 31 1 3.8567 0.6441 0.8908 32 1 3.8355 3.1232 0.8913 33 1 3.8363 3.1238 -0.8887 34 1 6.0046 1.9213 -0.8889 35 1 6.0044 1.9205 0.8911 36 1 5.7084 4.5849 0.0009 37 1 8.0467 1.8358 0.0029 38 1 10.4930 2.0931 0.0052 39 1 11.4981 4.3388 -0.0049 40 1 11.9835 6.1695 0.8945 41 1 11.9851 6.1683 -0.8855 42 1 11.6475 8.6252 -0.8867 43 1 11.6460 8.6258 0.8932 44 1 13.9006 11.3986 0.0027 45 1 7.5999 6.0887 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179277946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:09 Heat of formation + Delta-G solvation = -101.378610 kcal Electronic energy + Delta-G solvation = -21682.494065 eV Core-core repulsion = 18277.630519 eV Total energy + Delta-G solvation = -3404.863546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01738 -39.26377 -38.86138 -36.88905 -35.45458 -34.43803 -32.56109 -31.22122 -30.13354 -28.53862 -27.13067 -26.69462 -24.33295 -23.89429 -22.94553 -22.01616 -21.69142 -19.31698 -18.30264 -17.49011 -17.28369 -17.12954 -16.90204 -16.73099 -16.52907 -16.46347 -16.08946 -15.95189 -15.28514 -14.61814 -14.47195 -14.32532 -14.12722 -14.07905 -13.33671 -13.29105 -13.17471 -12.88754 -12.81949 -12.53214 -12.51973 -12.33128 -12.26864 -11.97040 -11.84396 -11.77877 -11.56066 -11.53252 -11.35776 -10.81946 -10.62242 -10.61968 -9.21004 -8.33741 -8.26100 -6.39691 0.57880 0.70278 1.41639 1.42686 1.56359 2.16121 2.39612 2.68207 2.95528 2.97283 3.08400 3.88720 3.95828 4.00443 4.24125 4.28485 4.29772 4.31989 4.32086 4.34399 4.38475 4.52610 4.52932 4.54825 4.62938 4.68138 4.74155 4.76019 4.85193 4.85651 4.92190 5.05148 5.27595 5.29330 5.31938 5.34617 5.47965 5.53480 5.64799 5.67858 5.77793 6.08115 6.22937 6.41524 6.62980 6.75269 6.83031 7.30475 8.87323 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.057394 B = 0.001763 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.743022 B =15880.215994 C =16321.000674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.057 3.943 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.125 3.875 7 N -0.742 5.742 8 C 0.251 3.749 9 C -0.238 4.238 10 C -0.033 4.033 11 C -0.282 4.282 12 C 0.151 3.849 13 O -0.342 6.342 14 C 0.086 3.914 15 C 0.028 3.972 16 C -0.546 4.546 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.977 3.023 21 H -0.258 1.258 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.253 4.253 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.405 0.595 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.301 -22.238 -0.003 32.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.020 4.020 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.002 3.998 7 N -0.372 5.372 8 C 0.146 3.854 9 C -0.260 4.260 10 C -0.051 4.051 11 C -0.303 4.303 12 C 0.104 3.896 13 O -0.256 6.256 14 C 0.012 3.988 15 C -0.009 4.009 16 C -0.584 4.584 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.800 3.200 21 H -0.181 1.181 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.277 4.277 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.240 0.760 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.140 0.860 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.075 0.925 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.357 -22.241 -0.003 32.253 hybrid contribution 0.588 1.201 0.000 1.337 sum -22.769 -21.040 -0.003 31.002 Atomic orbital electron populations 1.22906 0.79643 1.03729 1.00800 1.87827 1.21373 1.29205 1.95621 1.22637 0.94113 0.84227 1.00976 1.21345 0.92985 0.96909 1.03665 1.21556 0.93102 0.97252 1.03679 1.21411 0.93101 0.83538 1.01770 1.44689 1.01795 1.08816 1.81859 1.17437 0.84829 0.92039 0.91073 1.20771 0.93174 0.97784 1.14298 1.20973 0.94937 0.96240 0.92967 1.21228 0.99964 0.93072 1.16021 1.19166 0.93014 0.84065 0.93316 1.86052 1.24465 1.27088 1.88008 1.22842 0.75985 0.99511 1.00481 1.18977 0.95843 0.90155 0.95970 1.21438 0.91440 0.93442 1.52044 0.91127 1.26042 1.04470 0.95022 0.94113 1.70134 1.37885 0.98310 1.50716 0.85222 0.78003 0.78865 0.77880 1.18123 1.20207 1.20201 1.19794 0.91873 0.97207 1.18815 0.88757 0.93248 0.93256 0.92555 0.92547 0.90927 0.90931 0.90493 0.90500 0.91764 0.91754 0.75981 0.83722 0.83279 0.86050 0.92280 0.92270 0.98344 0.98335 0.92461 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.16 10.70 -148.98 -1.59 -7.75 16 3 C 0.06 0.59 5.94 71.98 0.43 1.02 16 4 C -0.11 -1.06 5.58 30.59 0.17 -0.89 16 5 C -0.12 -1.03 5.33 30.59 0.16 -0.87 16 6 C 0.13 1.57 4.91 86.38 0.42 1.99 16 7 N -0.74 -13.31 5.73 -339.46 -1.95 -15.25 16 8 C 0.25 6.37 6.65 38.20 0.25 6.63 16 9 C -0.24 -5.57 9.31 22.42 0.21 -5.36 16 10 C -0.03 -0.84 10.03 22.24 0.22 -0.61 16 11 C -0.28 -9.28 9.04 22.39 0.20 -9.08 16 12 C 0.15 5.66 6.68 22.49 0.15 5.81 16 13 O -0.34 -15.34 10.13 -92.39 -0.94 -16.28 16 14 C 0.09 3.95 4.68 71.98 0.34 4.29 16 15 C 0.03 1.56 5.34 29.85 0.16 1.72 16 16 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 17 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 18 C 0.00 0.11 5.46 84.65 0.46 0.58 16 19 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 20 Si 0.98 44.02 29.54 68.60 2.03 46.04 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 C -0.25 -8.12 9.83 22.49 0.22 -7.90 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.06 0.79 7.95 -2.38 -0.02 0.78 16 35 H 0.06 0.80 7.95 -2.38 -0.02 0.78 16 36 H 0.40 6.30 8.48 -92.71 -0.79 5.51 16 37 H 0.15 2.53 6.73 -2.91 -0.02 2.51 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.12 4.00 6.29 -2.91 -0.02 3.98 16 40 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 41 H 0.06 2.57 7.65 -2.39 -0.02 2.55 16 42 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -70.49 374.06 2.89 -67.61 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.17 Total: 15.07 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 4.88 Total: -32.41 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.66 Total: -72.27 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -2.53 Total: -24.03 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.49 2.89 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179277946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.773 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds