Wall clock time and date at job start Tue Mar 31 2020 06:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99928 * 2 1 4 4 C 1.38738 * 120.05563 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94307 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.05891 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94599 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47305 * 340.00645 * 7 6 5 9 9 C 1.53005 * 109.46893 * 100.00251 * 7 6 5 10 10 C 1.53001 * 109.46946 * 294.35676 * 9 7 6 11 11 O 1.42903 * 109.47043 * 185.25668 * 10 9 7 12 12 N 1.46900 * 109.47509 * 219.99888 * 7 6 5 13 13 C 1.46903 * 111.00000 * 152.91241 * 12 7 6 14 14 C 1.52998 * 109.46930 * 176.09249 * 13 12 7 15 15 C 1.53000 * 109.47140 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99844 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99923 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99873 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46927 * 89.99704 * 20 18 16 22 22 H 1.48495 * 109.46930 * 209.99840 * 20 18 16 23 23 H 1.48492 * 109.47002 * 329.99674 * 20 18 16 24 24 C 1.38269 * 120.11285 * 0.02562 * 6 5 4 25 25 C 1.38139 * 120.05365 * 359.97438 * 24 6 5 26 26 H 1.08997 * 109.47446 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47291 * 300.00369 * 1 2 3 28 28 H 1.09001 * 109.47122 * 59.99360 * 1 2 3 29 29 H 1.07997 * 120.02216 * 359.95112 * 4 3 2 30 30 H 1.08005 * 119.96742 * 179.72309 * 5 4 3 31 31 H 1.08991 * 109.47221 * 54.36165 * 9 7 6 32 32 H 1.09004 * 109.46677 * 174.36430 * 9 7 6 33 33 H 1.08998 * 109.47654 * 305.25582 * 10 9 7 34 34 H 1.08999 * 109.46954 * 65.26099 * 10 9 7 35 35 H 0.96696 * 114.00469 * 180.02562 * 11 10 9 36 36 H 1.00891 * 111.00449 * 276.87309 * 12 7 6 37 37 H 1.08995 * 109.47369 * 296.09510 * 13 12 7 38 38 H 1.08997 * 109.46604 * 56.09651 * 13 12 7 39 39 H 1.08995 * 109.47307 * 300.00298 * 14 13 12 40 40 H 1.09002 * 109.46876 * 60.00381 * 14 13 12 41 41 H 1.09003 * 109.46863 * 300.00438 * 15 14 13 42 42 H 1.08998 * 109.46862 * 59.99592 * 15 14 13 43 43 H 0.96996 * 119.99577 * 179.97438 * 19 18 16 44 44 H 1.08002 * 119.97022 * 180.02562 * 24 6 5 45 45 H 1.07997 * 120.02892 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0117 4.9041 0.3483 9 6 3.9939 5.5857 -1.4238 10 6 4.8641 4.7027 -2.3205 11 8 4.9711 5.2978 -3.6153 12 7 3.2635 5.9372 0.8871 13 6 4.1627 6.9684 1.4218 14 6 3.3575 7.9605 2.2634 15 6 4.2939 9.0349 2.8199 16 6 3.5010 10.0118 3.6494 17 1 2.4357 9.8797 3.7675 18 6 4.1355 11.0747 4.2566 19 7 5.4328 11.2358 4.1123 20 14 3.1524 12.2859 5.2843 21 1 3.1158 11.8229 6.6948 22 1 3.7926 13.6242 5.2190 23 1 1.7675 12.3735 4.7559 24 6 1.9211 3.6048 -0.0011 25 6 1.2916 2.3752 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.0208 0.3799 -0.0002 30 1 5.1345 2.5750 0.0030 31 1 2.9758 5.6064 -1.8123 32 1 4.3978 6.5980 -1.4087 33 1 5.8573 4.6063 -1.8819 34 1 4.4093 3.7163 -2.4105 35 1 5.5097 4.7907 -4.2380 36 1 2.4759 6.3541 0.4140 37 1 4.9248 6.4990 2.0437 38 1 4.6413 7.4963 0.5969 39 1 2.5954 8.4299 1.6415 40 1 2.8789 7.4326 3.0883 41 1 5.0564 8.5657 3.4417 42 1 4.7723 9.5627 1.9948 43 1 5.8790 11.9837 4.5392 44 1 1.3343 4.5115 -0.0019 45 1 0.2130 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182398674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:54 Heat of formation + Delta-G solvation = -82.548115 kcal Electronic energy + Delta-G solvation = -22875.341455 eV Core-core repulsion = 19471.294461 eV Total energy + Delta-G solvation = -3404.046994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38581 -38.70484 -36.98713 -36.25805 -33.96017 -32.29787 -31.23100 -30.14737 -29.74995 -27.62556 -26.25629 -24.26788 -23.13724 -22.37249 -21.94575 -20.62155 -19.96794 -18.33026 -17.57320 -16.64562 -16.18934 -15.99779 -15.91694 -15.23559 -15.02068 -14.77076 -14.44327 -14.33619 -13.91778 -13.74812 -13.48246 -13.22711 -12.89697 -12.56153 -12.40436 -12.15678 -12.09814 -11.65198 -11.47994 -11.25429 -11.11601 -11.00363 -10.85345 -10.83058 -10.56644 -10.47211 -10.12683 -9.69783 -9.33590 -9.08835 -9.04430 -8.32564 -8.27752 -8.13210 -5.97714 -3.99688 1.24055 1.33420 3.07051 3.33766 3.39700 3.43279 3.63003 3.97035 4.39973 4.49873 4.63984 4.71084 4.75304 4.86660 4.88122 4.94102 5.13149 5.15804 5.18758 5.28843 5.29934 5.38150 5.38779 5.46103 5.59516 5.75787 5.86249 5.89945 5.95293 5.99215 6.16654 6.28907 6.32856 6.51927 6.63563 6.73013 6.79069 7.14277 7.21320 7.30996 7.44130 7.57759 7.70518 7.85450 8.02795 8.45933 9.07524 9.64189 11.13766 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016235 B = 0.002811 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.217035 B = 9959.524921 C =11178.717603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.097 4.097 7 C 0.131 3.869 8 H 0.086 0.914 9 C -0.145 4.145 10 C 0.079 3.921 11 O -0.576 6.576 12 N -0.679 5.679 13 C 0.058 3.942 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.055 4.055 25 C -0.207 4.207 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.377 0.623 36 H 0.339 0.661 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.125 0.875 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -22.219 -13.560 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.073 3.927 4 C -0.171 4.171 5 C -0.098 4.098 6 C -0.098 4.098 7 C 0.020 3.980 8 H 0.104 0.896 9 C -0.184 4.184 10 C 0.001 3.999 11 O -0.381 6.381 12 N -0.309 5.309 13 C -0.070 4.070 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.074 4.074 25 C -0.226 4.226 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.224 0.776 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.143 0.857 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.400 -22.231 -12.649 26.141 hybrid contribution -0.244 0.986 -0.363 1.078 sum -5.643 -21.245 -13.012 25.544 Atomic orbital electron populations 1.23030 0.78528 1.03725 1.01431 1.86043 1.21291 1.27208 1.88975 1.19020 0.92379 0.84032 0.97297 1.20326 0.91314 0.98418 1.07032 1.20800 0.99649 0.90996 0.98344 1.19729 0.93719 0.94324 1.02045 1.20354 0.97650 0.90003 0.89953 0.89569 1.22281 1.00933 1.00344 0.94883 1.22174 0.98618 0.95838 0.83260 1.86494 1.75230 1.53005 1.23372 1.60732 1.10939 1.21298 1.37899 1.22198 0.95460 0.91778 0.97592 1.21635 0.98767 0.96070 0.98105 1.19059 0.94428 0.92317 0.95721 1.21255 0.94539 1.09603 1.30289 0.92693 1.25034 0.94899 0.97927 0.96687 1.69969 1.08458 1.30728 1.44453 0.86595 0.80204 0.80531 0.80684 1.20663 1.21264 1.19895 1.20729 0.94097 0.96851 0.95701 1.21222 0.99907 0.92384 1.09072 0.88426 0.92587 0.92736 0.85469 0.85592 0.91013 0.90547 0.93685 0.93332 0.77648 0.84306 0.91325 0.95438 0.93659 0.92529 0.96573 0.96785 0.93046 0.85664 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.34 10.50 -19.42 -0.20 -3.55 16 3 C 0.12 1.30 6.69 -39.21 -0.26 1.04 16 4 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 5 C -0.08 -0.82 8.92 -39.61 -0.35 -1.18 16 6 C -0.10 -1.11 4.27 -104.60 -0.45 -1.55 16 7 C 0.13 1.56 2.26 -68.86 -0.16 1.40 16 8 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 9 C -0.15 -1.67 5.01 -26.73 -0.13 -1.80 16 10 C 0.08 0.80 6.64 37.16 0.25 1.04 16 11 O -0.58 -6.19 13.66 -35.23 -0.48 -6.67 16 12 N -0.68 -9.57 5.70 -107.95 -0.61 -10.19 16 13 C 0.06 0.98 5.47 -3.82 -0.02 0.96 16 14 C -0.11 -2.23 5.37 -26.73 -0.14 -2.37 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 19 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.06 -0.63 9.31 -39.61 -0.37 -1.00 16 25 C -0.21 -2.20 9.04 -39.43 -0.36 -2.55 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.06 8.03 -52.48 -0.42 0.64 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.00 7.45 -51.93 -0.39 0.61 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.45 7.11 -51.93 -0.37 0.08 16 35 H 0.38 2.23 9.12 45.56 0.42 2.65 16 36 H 0.34 4.49 7.85 -39.30 -0.31 4.19 16 37 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 38 H 0.03 0.47 7.44 -51.93 -0.39 0.08 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 1.34 7.31 -52.49 -0.38 0.95 16 45 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -33.19 369.15 -8.68 -41.87 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.71 Total: 2.69 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.95 Total: -20.08 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.12 Total: -36.73 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.69 Total: -10.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.19 -8.68 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182398674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.679 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds