Wall clock time and date at job start Tue Mar 31 2020 06:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99928 * 2 1 4 4 C 1.38738 * 120.05563 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94307 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.05891 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94599 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47305 * 340.00645 * 7 6 5 9 9 C 1.53005 * 109.46893 * 100.00251 * 7 6 5 10 10 C 1.53001 * 109.46946 * 294.35676 * 9 7 6 11 11 O 1.42903 * 109.47043 * 185.25668 * 10 9 7 12 12 N 1.46900 * 109.47509 * 219.99888 * 7 6 5 13 13 C 1.46903 * 111.00000 * 152.91241 * 12 7 6 14 14 C 1.52998 * 109.46930 * 176.09249 * 13 12 7 15 15 C 1.53000 * 109.47140 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99844 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99923 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99873 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46927 * 89.99704 * 20 18 16 22 22 H 1.48495 * 109.46930 * 209.99840 * 20 18 16 23 23 H 1.48492 * 109.47002 * 329.99674 * 20 18 16 24 24 C 1.38269 * 120.11285 * 0.02562 * 6 5 4 25 25 C 1.38139 * 120.05365 * 359.97438 * 24 6 5 26 26 H 1.08997 * 109.47446 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47291 * 300.00369 * 1 2 3 28 28 H 1.09001 * 109.47122 * 59.99360 * 1 2 3 29 29 H 1.07997 * 120.02216 * 359.95112 * 4 3 2 30 30 H 1.08005 * 119.96742 * 179.72309 * 5 4 3 31 31 H 1.08991 * 109.47221 * 54.36165 * 9 7 6 32 32 H 1.09004 * 109.46677 * 174.36430 * 9 7 6 33 33 H 1.08998 * 109.47654 * 305.25582 * 10 9 7 34 34 H 1.08999 * 109.46954 * 65.26099 * 10 9 7 35 35 H 0.96696 * 114.00469 * 180.02562 * 11 10 9 36 36 H 1.00891 * 111.00449 * 276.87309 * 12 7 6 37 37 H 1.08995 * 109.47369 * 296.09510 * 13 12 7 38 38 H 1.08997 * 109.46604 * 56.09651 * 13 12 7 39 39 H 1.08995 * 109.47307 * 300.00298 * 14 13 12 40 40 H 1.09002 * 109.46876 * 60.00381 * 14 13 12 41 41 H 1.09003 * 109.46863 * 300.00438 * 15 14 13 42 42 H 1.08998 * 109.46862 * 59.99592 * 15 14 13 43 43 H 0.96996 * 119.99577 * 179.97438 * 19 18 16 44 44 H 1.08002 * 119.97022 * 180.02562 * 24 6 5 45 45 H 1.07997 * 120.02892 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0117 4.9041 0.3483 9 6 3.9939 5.5857 -1.4238 10 6 4.8641 4.7027 -2.3205 11 8 4.9711 5.2978 -3.6153 12 7 3.2635 5.9372 0.8871 13 6 4.1627 6.9684 1.4218 14 6 3.3575 7.9605 2.2634 15 6 4.2939 9.0349 2.8199 16 6 3.5010 10.0118 3.6494 17 1 2.4357 9.8797 3.7675 18 6 4.1355 11.0747 4.2566 19 7 5.4328 11.2358 4.1123 20 14 3.1524 12.2859 5.2843 21 1 3.1158 11.8229 6.6948 22 1 3.7926 13.6242 5.2190 23 1 1.7675 12.3735 4.7559 24 6 1.9211 3.6048 -0.0011 25 6 1.2916 2.3752 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.0208 0.3799 -0.0002 30 1 5.1345 2.5750 0.0030 31 1 2.9758 5.6064 -1.8123 32 1 4.3978 6.5980 -1.4087 33 1 5.8573 4.6063 -1.8819 34 1 4.4093 3.7163 -2.4105 35 1 5.5097 4.7907 -4.2380 36 1 2.4759 6.3541 0.4140 37 1 4.9248 6.4990 2.0437 38 1 4.6413 7.4963 0.5969 39 1 2.5954 8.4299 1.6415 40 1 2.8789 7.4326 3.0883 41 1 5.0564 8.5657 3.4417 42 1 4.7723 9.5627 1.9948 43 1 5.8790 11.9837 4.5392 44 1 1.3343 4.5115 -0.0019 45 1 0.2130 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182398674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:53 Heat of formation + Delta-G solvation = -105.625699 kcal Electronic energy + Delta-G solvation = -22876.342174 eV Core-core repulsion = 19471.294461 eV Total energy + Delta-G solvation = -3405.047713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16989 -39.57668 -37.77331 -37.40409 -35.69564 -33.97936 -32.03906 -31.64442 -30.54338 -28.46449 -27.76991 -25.50356 -24.21242 -23.61151 -22.88673 -22.03843 -21.19298 -19.07258 -18.50025 -18.37911 -17.34497 -16.87315 -16.59439 -16.54347 -16.42218 -15.98188 -15.57553 -15.46137 -14.86304 -14.63016 -14.52805 -14.33454 -14.12793 -13.81162 -13.66635 -13.33807 -13.22526 -12.95980 -12.75650 -12.65575 -12.47179 -12.28547 -12.10761 -11.92049 -11.84550 -11.62537 -11.54211 -11.36646 -11.07847 -10.89417 -10.55029 -9.88574 -9.41351 -8.98445 -8.19988 -6.30873 0.44631 0.50533 1.39965 1.41502 1.52599 2.41060 2.42573 2.79830 3.08927 3.13147 3.46890 3.77393 3.90744 4.01077 4.10075 4.20879 4.24773 4.35144 4.37102 4.40299 4.40914 4.47159 4.52825 4.60629 4.67877 4.72502 4.75062 4.79733 4.95062 5.04605 5.06045 5.11174 5.17574 5.25025 5.35593 5.46435 5.52369 5.69733 5.76208 5.85997 5.86547 6.08181 6.27439 6.43702 6.49088 6.86238 6.88779 7.38288 8.91966 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016235 B = 0.002811 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.217035 B = 9959.524921 C =11178.717603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.108 3.892 4 C -0.161 4.161 5 C -0.079 4.079 6 C -0.108 4.108 7 C 0.138 3.862 8 H 0.087 0.913 9 C -0.141 4.141 10 C 0.083 3.917 11 O -0.597 6.597 12 N -0.679 5.679 13 C 0.073 3.927 14 C -0.093 4.093 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.263 1.263 24 C -0.067 4.067 25 C -0.212 4.212 26 H 0.118 0.882 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.344 0.656 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.050 0.950 40 H 0.053 0.947 41 H -0.009 1.009 42 H -0.009 1.009 43 H 0.263 0.737 44 H 0.127 0.873 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -23.184 -13.774 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.097 4.097 6 C -0.109 4.109 7 C 0.028 3.972 8 H 0.105 0.895 9 C -0.180 4.180 10 C 0.005 3.995 11 O -0.406 6.406 12 N -0.309 5.309 13 C -0.056 4.056 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.086 4.086 25 C -0.231 4.231 26 H 0.137 0.863 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.247 0.753 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.145 0.855 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.511 -23.224 -12.886 27.346 hybrid contribution 0.087 1.208 -0.338 1.258 sum -6.424 -22.016 -13.224 26.474 Atomic orbital electron populations 1.23296 0.76762 1.05405 1.02030 1.86026 1.23205 1.26969 1.88858 1.19239 0.92843 0.84464 0.97138 1.20574 0.91531 0.99016 1.06819 1.20995 1.00601 0.90535 0.97580 1.19693 0.93904 0.94103 1.03188 1.20294 0.97466 0.89798 0.89643 0.89509 1.22187 1.01087 0.99610 0.95092 1.22127 0.98917 0.95560 0.82941 1.86437 1.76007 1.54129 1.24029 1.60650 1.10729 1.20385 1.39113 1.21872 0.95094 0.91660 0.96980 1.21379 0.97955 0.95327 0.98426 1.18962 0.94580 0.93251 0.94418 1.21706 0.95053 1.10478 1.30841 0.92259 1.26000 0.96001 1.00015 0.97951 1.70100 1.10246 1.31592 1.45494 0.85443 0.78895 0.77778 0.78919 1.19756 1.20695 1.18731 1.20856 0.94275 0.97314 0.96117 1.21400 1.00860 0.92013 1.08781 0.86332 0.92213 0.91861 0.84205 0.83776 0.91273 0.92431 0.92564 0.92405 0.75323 0.83690 0.91810 0.95653 0.93124 0.92868 0.99017 0.99108 0.92777 0.85515 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -6.49 10.50 -92.42 -0.97 -7.46 16 3 C 0.11 2.25 6.69 22.51 0.15 2.40 16 4 C -0.16 -3.15 9.99 22.37 0.22 -2.93 16 5 C -0.08 -1.50 8.92 22.25 0.20 -1.30 16 6 C -0.11 -2.33 4.27 -19.85 -0.08 -2.41 16 7 C 0.14 3.16 2.26 44.17 0.10 3.26 16 8 H 0.09 1.99 7.68 -2.38 -0.02 1.97 16 9 C -0.14 -3.14 5.01 30.60 0.15 -2.98 16 10 C 0.08 1.54 6.64 71.98 0.48 2.02 16 11 O -0.60 -12.07 13.66 -148.98 -2.03 -14.11 16 12 N -0.68 -18.73 5.70 -495.44 -2.82 -21.55 16 13 C 0.07 2.48 5.47 86.30 0.47 2.95 16 14 C -0.09 -3.86 5.37 30.59 0.16 -3.70 16 15 C 0.03 1.37 4.97 29.85 0.15 1.52 16 16 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 17 H 0.06 3.31 7.74 -2.92 -0.02 3.28 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 20 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 C -0.07 -1.45 9.31 22.25 0.21 -1.24 16 25 C -0.21 -4.22 9.04 22.36 0.20 -4.01 16 26 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.64 7.66 -2.38 -0.02 0.62 16 28 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 29 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.14 2.12 8.03 -2.91 -0.02 2.10 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.50 7.45 -2.39 -0.02 1.48 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.97 7.11 -2.39 -0.02 0.96 16 35 H 0.40 4.07 9.12 -74.06 -0.68 3.40 16 36 H 0.34 8.90 7.85 -89.70 -0.70 8.20 16 37 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 38 H 0.03 0.87 7.44 -2.39 -0.02 0.85 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.13 2.60 7.31 -2.91 -0.02 2.58 16 45 H 0.14 2.21 6.30 -2.91 -0.02 2.19 16 Total: -1.00 -70.93 369.15 0.31 -70.63 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.40 Total: 19.02 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.22 Total: -36.04 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -2.54 Total: -78.95 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -3.01 Total: -21.57 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.93 0.31 -70.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182398674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.998 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds