Wall clock time and date at job start Tue Mar 31 2020 06:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47308 * 2 1 4 4 C 1.42897 * 113.99759 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46850 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47078 * 64.99972 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.09000 * 109.47670 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47151 * 299.99866 * 1 2 3 27 27 H 1.08998 * 109.47560 * 59.99696 * 1 2 3 28 28 H 1.09000 * 109.46702 * 239.99987 * 2 1 3 29 29 H 1.08998 * 109.47035 * 120.00311 * 2 1 3 30 30 H 1.09003 * 109.47611 * 60.00125 * 4 3 2 31 31 H 1.08998 * 109.47515 * 299.99958 * 4 3 2 32 32 H 1.08996 * 109.47046 * 304.99641 * 5 4 3 33 33 H 1.09006 * 109.46798 * 184.99909 * 5 4 3 34 34 H 1.00901 * 111.00271 * 303.95429 * 6 5 4 35 35 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 38 38 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3867 3.5627 1.2540 7 6 3.7498 4.9856 1.2893 8 6 3.2841 5.5909 2.5884 9 6 2.0217 6.1482 2.6775 10 6 1.5917 6.7048 3.8677 11 6 2.4203 6.6996 4.9732 12 6 3.6890 6.1459 4.8850 13 8 4.5080 6.1446 5.9694 14 6 3.9998 6.7359 7.1670 15 6 5.0553 6.6407 8.2705 16 6 4.5191 7.2636 9.5336 17 1 3.5248 7.6849 9.5480 18 6 5.2975 7.2949 10.6712 19 7 6.5082 6.7814 10.6538 20 14 4.6332 8.0677 12.2367 21 1 3.4056 7.3481 12.6616 22 1 5.6570 7.9741 13.3081 23 1 4.3083 9.4947 11.9850 24 6 4.1184 5.5882 3.6892 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9763 0.8891 32 1 3.3494 3.4410 -0.8430 33 1 4.9083 3.0252 -0.0912 34 1 2.3948 3.4388 1.3922 35 1 3.2735 5.5029 0.4564 36 1 4.8322 5.0865 1.2084 37 1 1.3705 6.1487 1.8159 38 1 0.6054 7.1398 3.9347 39 1 2.0822 7.1303 5.9042 40 1 3.7605 7.7830 6.9820 41 1 3.0993 6.2071 7.4795 42 1 5.2942 5.5934 8.4554 43 1 5.9560 7.1691 7.9584 44 1 7.0557 6.8030 11.4543 45 1 5.1042 5.1529 3.6191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236905660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:06 Heat of formation + Delta-G solvation = -79.007950 kcal Electronic energy + Delta-G solvation = -22167.035491 eV Core-core repulsion = 18763.142010 eV Total energy + Delta-G solvation = -3403.893481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.77890 -38.57832 -37.51366 -35.76913 -33.36049 -32.32140 -31.08840 -30.70123 -29.19122 -28.39061 -25.33702 -24.53773 -23.13107 -22.30960 -22.16359 -21.57769 -20.11799 -17.60235 -17.11801 -16.59738 -16.29558 -15.93003 -15.60998 -15.41941 -15.29599 -14.96216 -14.67509 -14.46307 -13.92740 -13.42846 -13.32308 -13.03037 -12.86244 -12.57914 -12.35396 -12.26261 -12.07190 -11.82234 -11.63462 -11.46164 -11.34116 -11.24238 -11.15097 -10.83899 -10.70325 -10.39905 -9.92416 -9.82733 -9.63843 -9.29276 -8.75612 -8.54068 -8.42812 -7.79703 -6.08532 -4.13186 1.49112 1.72457 3.29873 3.34117 3.35154 3.35965 3.79175 3.89227 4.25436 4.42407 4.67685 4.70844 4.82423 4.90944 4.97867 5.01621 5.03569 5.09917 5.20275 5.24592 5.27626 5.33167 5.45402 5.49822 5.51581 5.54529 5.59041 5.74618 5.77415 5.89876 6.06585 6.09967 6.23677 6.59035 6.60840 6.72488 6.73595 6.77529 6.88229 7.03905 7.23471 7.53123 7.66572 7.83742 8.10209 8.25967 8.92165 9.50856 11.02982 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002220 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.987671 B =12608.440705 C =12839.660971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.392 6.392 4 C 0.062 3.938 5 C 0.062 3.938 6 N -0.682 5.682 7 C 0.102 3.898 8 C -0.051 4.051 9 C -0.166 4.166 10 C -0.081 4.081 11 C -0.211 4.211 12 C 0.144 3.856 13 O -0.316 6.316 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.139 4.139 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.351 0.649 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 -9.345 -24.100 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.312 6.312 4 C -0.015 4.015 5 C -0.068 4.068 6 N -0.314 5.314 7 C -0.027 4.027 8 C -0.052 4.052 9 C -0.184 4.184 10 C -0.099 4.099 11 C -0.230 4.230 12 C 0.097 3.903 13 O -0.229 6.229 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.158 4.158 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.647 -9.500 -23.609 26.878 hybrid contribution -0.983 0.645 0.416 1.247 sum -9.630 -8.855 -23.193 26.628 Atomic orbital electron populations 1.21747 0.93778 1.02234 1.03171 1.22429 0.95573 0.83721 1.00013 1.87843 1.21267 1.26601 1.95450 1.22579 0.81342 0.96942 1.00619 1.21983 1.00695 0.92904 0.91181 1.60488 1.23221 1.13291 1.34428 1.20841 1.01019 0.87416 0.93377 1.19375 0.93859 0.97532 0.94414 1.20776 0.96142 1.03413 0.98112 1.20839 0.98872 0.97829 0.92350 1.21386 0.94794 1.06331 1.00485 1.19197 0.89459 0.93514 0.88129 1.86174 1.41850 1.75745 1.19103 1.23319 0.99824 0.95678 0.82053 1.19118 0.93433 0.98704 0.89925 1.20935 1.01246 1.39251 0.95056 0.92431 1.24996 0.94835 0.95354 0.99046 1.69971 1.08835 1.44739 1.29204 0.86540 0.78615 0.79786 0.82380 1.20101 1.21127 1.20105 1.20256 1.01332 1.03754 0.90452 0.91159 0.91657 0.92015 0.93654 0.93231 0.93006 0.92095 0.94517 0.89530 0.82959 0.94344 0.90085 0.86788 0.86252 0.85298 0.93177 0.93162 0.95384 0.95401 0.92663 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.39 -3.72 9.86 -35.23 -0.35 -4.06 16 4 C 0.06 0.50 6.28 37.16 0.23 0.73 16 5 C 0.06 0.51 6.11 -3.82 -0.02 0.49 16 6 N -0.68 -7.20 6.49 -115.06 -0.75 -7.95 16 7 C 0.10 1.08 5.81 -4.98 -0.03 1.05 16 8 C -0.05 -0.68 5.39 -104.65 -0.56 -1.24 16 9 C -0.17 -2.09 9.70 -39.56 -0.38 -2.48 16 10 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 11 C -0.21 -3.41 9.04 -39.44 -0.36 -3.77 16 12 C 0.14 2.60 6.69 -39.22 -0.26 2.34 16 13 O -0.32 -6.70 10.14 -19.43 -0.20 -6.90 16 14 C 0.07 1.43 4.68 37.16 0.17 1.61 16 15 C 0.03 0.67 5.34 -27.89 -0.15 0.53 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.14 -2.20 9.64 -39.43 -0.38 -2.58 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.35 3.90 8.28 -39.29 -0.33 3.58 16 35 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.13 2.05 6.30 -52.48 -0.33 1.72 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.65 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -30.96 376.71 -9.57 -40.53 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.75 Total: 0.49 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.92 Total: -18.26 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: -0.01 Total: -33.88 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.54 Total: -10.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.96 -9.57 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236905660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.481 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds