Wall clock time and date at job start Tue Mar 31 2020 06:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47308 * 2 1 4 4 C 1.42897 * 113.99759 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46850 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47078 * 64.99972 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.09000 * 109.47670 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47151 * 299.99866 * 1 2 3 27 27 H 1.08998 * 109.47560 * 59.99696 * 1 2 3 28 28 H 1.09000 * 109.46702 * 239.99987 * 2 1 3 29 29 H 1.08998 * 109.47035 * 120.00311 * 2 1 3 30 30 H 1.09003 * 109.47611 * 60.00125 * 4 3 2 31 31 H 1.08998 * 109.47515 * 299.99958 * 4 3 2 32 32 H 1.08996 * 109.47046 * 304.99641 * 5 4 3 33 33 H 1.09006 * 109.46798 * 184.99909 * 5 4 3 34 34 H 1.00901 * 111.00271 * 303.95429 * 6 5 4 35 35 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 38 38 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3867 3.5627 1.2540 7 6 3.7498 4.9856 1.2893 8 6 3.2841 5.5909 2.5884 9 6 2.0217 6.1482 2.6775 10 6 1.5917 6.7048 3.8677 11 6 2.4203 6.6996 4.9732 12 6 3.6890 6.1459 4.8850 13 8 4.5080 6.1446 5.9694 14 6 3.9998 6.7359 7.1670 15 6 5.0553 6.6407 8.2705 16 6 4.5191 7.2636 9.5336 17 1 3.5248 7.6849 9.5480 18 6 5.2975 7.2949 10.6712 19 7 6.5082 6.7814 10.6538 20 14 4.6332 8.0677 12.2367 21 1 3.4056 7.3481 12.6616 22 1 5.6570 7.9741 13.3081 23 1 4.3083 9.4947 11.9850 24 6 4.1184 5.5882 3.6892 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9763 0.8891 32 1 3.3494 3.4410 -0.8430 33 1 4.9083 3.0252 -0.0912 34 1 2.3948 3.4388 1.3922 35 1 3.2735 5.5029 0.4564 36 1 4.8322 5.0865 1.2084 37 1 1.3705 6.1487 1.8159 38 1 0.6054 7.1398 3.9347 39 1 2.0822 7.1303 5.9042 40 1 3.7605 7.7830 6.9820 41 1 3.0993 6.2071 7.4795 42 1 5.2942 5.5934 8.4554 43 1 5.9560 7.1691 7.9584 44 1 7.0557 6.8030 11.4543 45 1 5.1042 5.1529 3.6191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236905660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:06 Heat of formation + Delta-G solvation = -98.271976 kcal Electronic energy + Delta-G solvation = -22167.870842 eV Core-core repulsion = 18763.142010 eV Total energy + Delta-G solvation = -3404.728832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07549 -39.30079 -38.72931 -36.65547 -35.45918 -33.10970 -32.58068 -31.80269 -30.62672 -29.21725 -27.06688 -25.75034 -23.67331 -23.53323 -23.28021 -22.81222 -21.53256 -19.11818 -18.15304 -17.73768 -17.24860 -17.01924 -16.92974 -16.87271 -16.53786 -16.41782 -15.67702 -15.37531 -14.94192 -14.49487 -14.32650 -14.30930 -14.19824 -13.89541 -13.52896 -13.40124 -13.00876 -12.90579 -12.78603 -12.61174 -12.56221 -12.45168 -12.31528 -12.16732 -11.95336 -11.74696 -11.58737 -11.57332 -11.38221 -10.61780 -10.53092 -9.83163 -9.36744 -9.08179 -8.26690 -6.40717 0.35086 0.53857 1.40599 1.44904 1.52896 2.27368 2.51551 2.75538 2.78796 3.07336 3.39630 3.84322 3.92810 4.07684 4.16224 4.18458 4.23647 4.26251 4.30782 4.33867 4.41642 4.43394 4.51104 4.51772 4.56934 4.67119 4.72550 4.73523 4.86104 4.90585 4.97426 5.05404 5.11504 5.27912 5.30962 5.44548 5.46022 5.52329 5.61643 5.68377 5.89105 6.03847 6.07893 6.29214 6.43017 6.58060 6.73713 7.29236 8.86247 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002220 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.987671 B =12608.440705 C =12839.660971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.411 6.411 4 C 0.062 3.938 5 C 0.063 3.937 6 N -0.695 5.695 7 C 0.106 3.894 8 C -0.046 4.046 9 C -0.154 4.154 10 C -0.078 4.078 11 C -0.223 4.223 12 C 0.105 3.895 13 O -0.343 6.343 14 C 0.085 3.915 15 C 0.028 3.972 16 C -0.547 4.547 17 H 0.071 0.929 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.152 4.152 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.348 0.652 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.127 0.873 40 H 0.060 0.940 41 H 0.058 0.942 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 -8.985 -25.582 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.331 6.331 4 C -0.015 4.015 5 C -0.066 4.066 6 N -0.327 5.327 7 C -0.022 4.022 8 C -0.047 4.047 9 C -0.172 4.172 10 C -0.096 4.096 11 C -0.242 4.242 12 C 0.060 3.940 13 O -0.257 6.257 14 C 0.011 3.989 15 C -0.009 4.009 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.171 4.171 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.852 -9.147 -25.124 28.855 hybrid contribution -0.316 0.460 0.700 0.895 sum -11.168 -8.687 -24.424 28.226 Atomic orbital electron populations 1.21759 0.93222 1.03199 1.02568 1.22584 0.96108 0.83052 1.00603 1.87815 1.21919 1.27822 1.95576 1.22621 0.80945 0.96872 1.01060 1.22046 1.01319 0.92900 0.90316 1.60474 1.23010 1.13261 1.36000 1.20833 1.01404 0.87640 0.92337 1.19697 0.93734 0.96694 0.94556 1.21208 0.95946 1.01256 0.98815 1.21214 0.99680 0.97086 0.91578 1.21500 0.94464 1.06611 1.01593 1.19527 0.90446 0.96286 0.87761 1.86083 1.43278 1.76639 1.19715 1.22850 0.97968 0.96492 0.81615 1.18963 0.93863 0.96194 0.91879 1.21363 1.01951 1.39411 0.95750 0.91102 1.26073 0.94979 0.95687 1.03098 1.70122 1.10395 1.46017 1.30450 0.85314 0.78145 0.79195 0.77274 1.18830 1.20736 1.18786 1.20403 1.01823 1.04117 0.90742 0.89468 0.92725 0.92071 0.92297 0.93381 0.91100 0.93083 0.93847 0.88534 0.83385 0.92294 0.89806 0.83432 0.83118 0.85535 0.92190 0.92338 0.98431 0.98324 0.92425 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.41 -7.23 9.86 -148.98 -1.47 -8.70 16 4 C 0.06 0.90 6.28 71.98 0.45 1.35 16 5 C 0.06 0.93 6.11 86.31 0.53 1.45 16 6 N -0.70 -13.51 6.49 -517.93 -3.36 -16.87 16 7 C 0.11 2.01 5.81 85.56 0.50 2.51 16 8 C -0.05 -1.15 5.39 -19.88 -0.11 -1.26 16 9 C -0.15 -3.41 9.70 22.28 0.22 -3.20 16 10 C -0.08 -1.91 10.04 22.25 0.22 -1.68 16 11 C -0.22 -7.08 9.04 22.36 0.20 -6.88 16 12 C 0.11 3.89 6.69 22.50 0.15 4.04 16 13 O -0.34 -15.30 10.14 -92.43 -0.94 -16.24 16 14 C 0.09 3.87 4.68 71.98 0.34 4.21 16 15 C 0.03 1.58 5.34 29.85 0.16 1.74 16 16 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 17 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 20 Si 0.98 43.96 29.54 68.60 2.03 45.98 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 C -0.15 -4.85 9.64 22.37 0.22 -4.64 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.35 7.11 8.28 -89.69 -0.74 6.36 16 35 H 0.06 0.90 8.08 -2.38 -0.02 0.88 16 36 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 37 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.13 3.98 6.30 -2.91 -0.02 3.97 16 40 H 0.06 2.56 7.67 -2.39 -0.02 2.54 16 41 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -68.83 376.71 1.54 -67.29 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.21 Total: 18.51 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.79 Total: -32.87 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -3.08 Total: -73.98 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -2.41 Total: -24.94 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.83 1.54 -67.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236905660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.980 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds