Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00199 * 2 1 4 4 C 1.52997 * 109.47151 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47203 * 64.99841 * 4 3 2 6 6 C 1.35899 * 116.99883 * 179.97438 * 5 4 3 7 7 C 1.38733 * 120.05512 * 179.97438 * 6 5 4 8 8 C 1.38148 * 119.94226 * 180.02562 * 7 6 5 9 9 C 1.38270 * 120.05515 * 0.02693 * 8 7 6 10 10 C 1.50707 * 119.93910 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46656 * 90.00160 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47104 * 60.00043 * 19 17 15 21 21 H 1.48496 * 109.47638 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47155 * 300.00196 * 19 17 15 23 23 C 1.38264 * 120.11323 * 0.24765 * 9 8 7 24 24 C 1.38141 * 120.05663 * 359.45486 * 23 9 8 25 25 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47133 * 299.99974 * 1 2 3 27 27 H 1.08998 * 109.47444 * 60.00128 * 1 2 3 28 28 H 1.08996 * 109.47108 * 59.99671 * 3 2 1 29 29 H 1.09005 * 109.46572 * 299.99992 * 3 2 1 30 30 H 1.09002 * 109.47077 * 304.99964 * 4 3 2 31 31 H 1.09005 * 109.46998 * 184.99651 * 4 3 2 32 32 H 1.07996 * 120.02849 * 0.02562 * 7 6 5 33 33 H 1.08000 * 119.97048 * 179.97438 * 8 7 6 34 34 H 1.08990 * 109.47142 * 330.00145 * 10 9 8 35 35 H 1.09004 * 109.46726 * 210.00043 * 10 9 8 36 36 H 1.00896 * 111.00219 * 303.95295 * 11 10 9 37 37 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 38 38 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 39 39 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 40 40 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 41 41 H 1.08993 * 109.47277 * 299.99937 * 14 13 12 42 42 H 1.09000 * 109.47041 * 60.00238 * 14 13 12 43 43 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.97123 * 179.70535 * 23 9 8 45 45 H 1.07995 * 120.03365 * 180.24888 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3019 0.3987 -1.3841 7 6 5.7885 -0.1835 -2.5456 8 6 7.1481 -0.3667 -2.7078 9 6 8.0237 0.0290 -1.7134 10 6 9.5064 -0.1727 -1.8928 11 7 10.0874 1.0130 -2.5365 12 6 11.5351 0.8522 -2.7274 13 6 12.1031 2.1038 -3.3993 14 6 13.6109 1.9365 -3.5975 15 6 14.1705 3.1697 -4.2588 16 1 13.5162 3.9907 -4.5120 17 6 15.5178 3.2497 -4.5406 18 7 16.3145 2.2497 -4.2327 19 14 16.2114 4.7779 -5.3609 20 1 15.9537 5.9612 -4.5014 21 1 17.6746 4.6152 -5.5543 22 1 15.5569 4.9721 -6.6797 23 6 7.5408 0.6042 -0.5525 24 6 6.1826 0.7953 -0.3881 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 5.1050 -0.4931 -3.3223 33 1 7.5274 -0.8203 -3.6116 34 1 9.6809 -1.0480 -2.5184 35 1 9.9730 -0.3231 -0.9192 36 1 9.6268 1.2114 -3.4120 37 1 12.0155 0.7092 -1.7594 38 1 11.7241 -0.0161 -3.3586 39 1 11.6226 2.2464 -4.3672 40 1 11.9141 2.9725 -2.7684 41 1 14.0911 1.7943 -2.6294 42 1 13.8004 1.0679 -4.2281 43 1 17.2624 2.3061 -4.4306 44 1 8.2264 0.9081 0.2246 45 1 5.8062 1.2483 0.5171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237107370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -75.321446 kcal Electronic energy + Delta-G solvation = -21765.074933 eV Core-core repulsion = 18361.341311 eV Total energy + Delta-G solvation = -3403.733622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36521 -38.60238 -37.69943 -36.03646 -33.56004 -31.96593 -31.31164 -30.79535 -29.55450 -26.87541 -26.41868 -24.47081 -23.88345 -22.27352 -22.13973 -21.07074 -20.02430 -18.55199 -17.28795 -16.53907 -16.38600 -16.12885 -15.77812 -15.52346 -15.15977 -15.08569 -14.59780 -14.35536 -14.17128 -13.65681 -13.54582 -13.40696 -13.01966 -12.59463 -12.53623 -12.17741 -12.05338 -11.76227 -11.65065 -11.38623 -11.24319 -11.08743 -10.89944 -10.77932 -10.53899 -10.49090 -10.20641 -9.65478 -9.31848 -9.09827 -9.04001 -8.31137 -8.29270 -8.04935 -5.96180 -3.98227 1.24209 1.32084 2.88690 3.22942 3.36263 3.40171 3.43107 3.62844 4.38299 4.47930 4.59146 4.62921 4.69669 4.70401 4.78616 4.84722 4.90237 4.92680 4.95096 5.11034 5.21797 5.25154 5.28093 5.39465 5.47500 5.60483 5.71543 5.85561 5.92048 5.98445 6.15993 6.24685 6.35834 6.59145 6.59329 6.65801 6.75778 6.80124 7.17662 7.23070 7.37115 7.66442 7.72294 7.87687 8.04350 8.47797 9.08789 9.65531 11.15212 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.039797 B = 0.001798 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.397003 B =15572.412385 C =15872.481107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.309 6.309 6 C 0.125 3.875 7 C -0.152 4.152 8 C -0.075 4.075 9 C -0.113 4.113 10 C 0.099 3.901 11 N -0.687 5.687 12 C 0.058 3.942 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.057 4.057 24 C -0.211 4.211 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.338 0.662 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.452 -5.409 9.870 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.223 6.223 6 C 0.080 3.920 7 C -0.170 4.170 8 C -0.093 4.093 9 C -0.114 4.114 10 C -0.029 4.029 11 N -0.318 5.318 12 C -0.070 4.070 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.076 4.076 24 C -0.229 4.229 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -30.232 -5.341 10.331 32.391 hybrid contribution 0.358 0.540 -0.953 1.153 sum -29.874 -4.800 9.378 31.677 Atomic orbital electron populations 1.22767 0.80774 1.03046 1.00001 1.87971 1.19867 1.27126 1.95418 1.22588 0.91613 0.85773 1.01465 1.22823 0.93598 0.98347 0.86683 1.86105 1.20295 1.77014 1.38912 1.18991 0.82130 0.96171 0.94721 1.20357 0.95527 1.04228 0.96914 1.20890 0.91972 0.98077 0.98393 1.19784 0.95423 1.01334 0.94843 1.20830 0.89934 0.92022 1.00164 1.60612 1.04646 1.36667 1.29837 1.22152 0.86027 0.98610 1.00206 1.21624 0.99007 0.95407 0.98463 1.19064 0.88612 0.96975 0.96914 1.21232 0.93065 1.02351 1.39146 0.92722 1.25025 0.97225 0.96294 0.95948 1.69955 1.04512 1.31173 1.47983 0.86654 0.77789 0.83529 0.79993 1.20239 1.21321 1.20288 1.20839 0.94210 0.95443 0.97100 1.21209 0.94251 1.07556 0.99906 0.89436 0.94037 0.93883 0.91064 0.92005 0.91071 0.90317 0.85392 0.85546 0.94685 0.90422 0.84422 0.91442 0.95727 0.93660 0.92569 0.96572 0.96797 0.93009 0.85559 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.38 10.67 -40.08 -0.43 -3.81 16 3 C 0.06 0.40 6.32 37.16 0.23 0.64 16 4 C 0.06 0.46 5.12 37.16 0.19 0.65 16 5 O -0.31 -3.41 10.10 -24.27 -0.25 -3.65 16 6 C 0.13 1.43 6.69 -39.21 -0.26 1.17 16 7 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 8 C -0.07 -0.83 9.69 -39.60 -0.38 -1.22 16 9 C -0.11 -1.36 5.39 -104.60 -0.56 -1.92 16 10 C 0.10 1.26 5.81 -4.97 -0.03 1.23 16 11 N -0.69 -10.35 6.49 -115.05 -0.75 -11.10 16 12 C 0.06 1.03 5.69 -3.82 -0.02 1.01 16 13 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 14 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.06 -0.65 9.69 -39.61 -0.38 -1.04 16 24 C -0.21 -2.23 9.04 -39.43 -0.36 -2.59 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.51 7.66 -51.93 -0.40 0.12 16 31 H 0.08 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.34 4.89 8.72 -39.29 -0.34 4.55 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.04 6.30 -52.49 -0.33 0.70 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -32.87 377.10 -9.34 -42.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.77 Total: -1.02 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.55 Total: -18.69 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.01 Total: -37.69 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.67 Total: -7.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.87 -9.34 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237107370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.111 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds