Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00199 * 2 1 4 4 C 1.52997 * 109.47151 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47203 * 64.99841 * 4 3 2 6 6 C 1.35899 * 116.99883 * 179.97438 * 5 4 3 7 7 C 1.38733 * 120.05512 * 179.97438 * 6 5 4 8 8 C 1.38148 * 119.94226 * 180.02562 * 7 6 5 9 9 C 1.38270 * 120.05515 * 0.02693 * 8 7 6 10 10 C 1.50707 * 119.93910 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46656 * 90.00160 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47104 * 60.00043 * 19 17 15 21 21 H 1.48496 * 109.47638 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47155 * 300.00196 * 19 17 15 23 23 C 1.38264 * 120.11323 * 0.24765 * 9 8 7 24 24 C 1.38141 * 120.05663 * 359.45486 * 23 9 8 25 25 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47133 * 299.99974 * 1 2 3 27 27 H 1.08998 * 109.47444 * 60.00128 * 1 2 3 28 28 H 1.08996 * 109.47108 * 59.99671 * 3 2 1 29 29 H 1.09005 * 109.46572 * 299.99992 * 3 2 1 30 30 H 1.09002 * 109.47077 * 304.99964 * 4 3 2 31 31 H 1.09005 * 109.46998 * 184.99651 * 4 3 2 32 32 H 1.07996 * 120.02849 * 0.02562 * 7 6 5 33 33 H 1.08000 * 119.97048 * 179.97438 * 8 7 6 34 34 H 1.08990 * 109.47142 * 330.00145 * 10 9 8 35 35 H 1.09004 * 109.46726 * 210.00043 * 10 9 8 36 36 H 1.00896 * 111.00219 * 303.95295 * 11 10 9 37 37 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 38 38 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 39 39 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 40 40 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 41 41 H 1.08993 * 109.47277 * 299.99937 * 14 13 12 42 42 H 1.09000 * 109.47041 * 60.00238 * 14 13 12 43 43 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.97123 * 179.70535 * 23 9 8 45 45 H 1.07995 * 120.03365 * 180.24888 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3019 0.3987 -1.3841 7 6 5.7885 -0.1835 -2.5456 8 6 7.1481 -0.3667 -2.7078 9 6 8.0237 0.0290 -1.7134 10 6 9.5064 -0.1727 -1.8928 11 7 10.0874 1.0130 -2.5365 12 6 11.5351 0.8522 -2.7274 13 6 12.1031 2.1038 -3.3993 14 6 13.6109 1.9365 -3.5975 15 6 14.1705 3.1697 -4.2588 16 1 13.5162 3.9907 -4.5120 17 6 15.5178 3.2497 -4.5406 18 7 16.3145 2.2497 -4.2327 19 14 16.2114 4.7779 -5.3609 20 1 15.9537 5.9612 -4.5014 21 1 17.6746 4.6152 -5.5543 22 1 15.5569 4.9721 -6.6797 23 6 7.5408 0.6042 -0.5525 24 6 6.1826 0.7953 -0.3881 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 5.1050 -0.4931 -3.3223 33 1 7.5274 -0.8203 -3.6116 34 1 9.6809 -1.0480 -2.5184 35 1 9.9730 -0.3231 -0.9192 36 1 9.6268 1.2114 -3.4120 37 1 12.0155 0.7092 -1.7594 38 1 11.7241 -0.0161 -3.3586 39 1 11.6226 2.2464 -4.3672 40 1 11.9141 2.9725 -2.7684 41 1 14.0911 1.7943 -2.6294 42 1 13.8004 1.0679 -4.2281 43 1 17.2624 2.3061 -4.4306 44 1 8.2264 0.9081 0.2246 45 1 5.8062 1.2483 0.5171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237107370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -96.050002 kcal Electronic energy + Delta-G solvation = -21765.973790 eV Core-core repulsion = 18361.341311 eV Total energy + Delta-G solvation = -3404.632480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14753 -39.29932 -38.42853 -37.33905 -35.43945 -33.47028 -32.23904 -31.64474 -30.66812 -28.14353 -27.26126 -25.76881 -24.63919 -23.81615 -22.98971 -22.11477 -21.61326 -19.29544 -18.47913 -17.81918 -17.31189 -17.08170 -16.55733 -16.53603 -16.23696 -16.16173 -15.75542 -15.54089 -15.39475 -14.76897 -14.57688 -14.28959 -14.22715 -13.76338 -13.62496 -13.36430 -13.12391 -13.01877 -12.65102 -12.55763 -12.53495 -12.35269 -12.25787 -12.16570 -11.78729 -11.68552 -11.50529 -11.36694 -11.09162 -10.68178 -10.53722 -9.93304 -9.39617 -9.02550 -8.18921 -6.30089 0.40775 0.45066 1.40776 1.44044 1.52019 2.21972 2.42063 2.74096 2.79583 3.13980 3.45491 3.79639 3.93475 3.97290 3.99894 4.10081 4.27976 4.28313 4.33759 4.36969 4.44210 4.46013 4.51265 4.54737 4.60494 4.69416 4.74545 4.77301 4.83521 4.86242 5.00380 5.12051 5.12442 5.25876 5.31573 5.40538 5.52984 5.71602 5.76672 5.82288 5.87081 6.06347 6.17262 6.28468 6.47273 6.48071 6.86578 7.39032 8.92667 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.039797 B = 0.001798 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.397003 B =15572.412385 C =15872.481107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C 0.052 3.948 5 O -0.326 6.326 6 C 0.117 3.883 7 C -0.164 4.164 8 C -0.076 4.076 9 C -0.126 4.126 10 C 0.103 3.897 11 N -0.688 5.688 12 C 0.072 3.928 13 C -0.093 4.093 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.267 1.267 23 C -0.066 4.066 24 C -0.211 4.211 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.343 0.657 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.049 0.951 40 H 0.051 0.949 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.264 0.736 44 H 0.134 0.866 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.771 -4.336 10.067 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.016 4.016 4 C -0.023 4.023 5 O -0.241 6.241 6 C 0.072 3.928 7 C -0.183 4.183 8 C -0.095 4.095 9 C -0.127 4.127 10 C -0.025 4.025 11 N -0.319 5.319 12 C -0.057 4.057 13 C -0.131 4.131 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.084 4.084 24 C -0.230 4.230 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.011 0.989 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.152 0.848 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -31.583 -4.267 10.534 33.566 hybrid contribution 0.679 0.178 -0.970 1.198 sum -30.904 -4.089 9.564 32.608 Atomic orbital electron populations 1.22918 0.79338 1.03740 1.01050 1.87918 1.21628 1.28562 1.95672 1.22739 0.90771 0.85267 1.02839 1.23121 0.94547 0.99099 0.85497 1.86093 1.19987 1.77354 1.40632 1.19188 0.82635 0.96048 0.94956 1.20562 0.95813 1.04480 0.97405 1.21041 0.91924 0.97831 0.98693 1.19763 0.94877 1.02469 0.95562 1.20818 0.90444 0.91188 1.00058 1.60535 1.03027 1.38161 1.30173 1.21851 0.87714 0.96606 0.99535 1.21377 0.95590 0.97057 0.99055 1.18973 0.92027 0.95421 0.94870 1.21688 0.93799 1.03296 1.39606 0.92296 1.25986 0.97617 0.99770 0.96451 1.70088 1.04916 1.33370 1.48944 0.85494 0.77076 0.79266 0.79166 1.19214 1.20723 1.19192 1.21022 0.94818 0.95400 0.97198 1.21423 0.93827 1.07195 1.00535 0.89051 0.92418 0.93357 0.88302 0.91891 0.90855 0.88464 0.84629 0.84294 0.93955 0.90236 0.83918 0.91771 0.95664 0.93197 0.92995 0.98941 0.98993 0.92773 0.84836 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.93 10.67 -144.34 -1.54 -8.47 16 3 C 0.06 0.68 6.32 71.98 0.45 1.14 16 4 C 0.05 0.71 5.12 71.98 0.37 1.08 16 5 O -0.33 -6.89 10.10 -87.78 -0.89 -7.77 16 6 C 0.12 2.56 6.69 22.51 0.15 2.71 16 7 C -0.16 -3.56 9.99 22.37 0.22 -3.34 16 8 C -0.08 -1.63 9.69 22.26 0.22 -1.41 16 9 C -0.13 -2.87 5.39 -19.85 -0.11 -2.98 16 10 C 0.10 2.50 5.81 85.56 0.50 3.00 16 11 N -0.69 -19.95 6.49 -517.91 -3.36 -23.31 16 12 C 0.07 2.50 5.69 86.30 0.49 2.99 16 13 C -0.09 -3.93 5.41 30.59 0.17 -3.76 16 14 C 0.02 1.33 4.97 29.85 0.15 1.48 16 15 C -0.55 -31.85 9.11 25.60 0.23 -31.61 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 19 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 C -0.07 -1.42 9.69 22.25 0.22 -1.20 16 24 C -0.21 -4.18 9.04 22.37 0.20 -3.98 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 31 H 0.10 0.93 7.66 -2.38 -0.02 0.91 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 35 H 0.08 1.89 8.08 -2.38 -0.02 1.87 16 36 H 0.34 9.47 8.72 -89.70 -0.78 8.68 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 45 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 Total: -1.00 -70.17 377.10 1.66 -68.51 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.17 Total: 15.36 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.97 Total: -33.96 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -3.08 Total: -80.56 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -2.43 Total: -16.24 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.17 1.66 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237107370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.539 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds