Wall clock time and date at job start Tue Mar 31 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99672 * 2 1 4 4 C 1.53001 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47085 * 185.00276 * 4 3 2 6 6 C 1.52998 * 109.47084 * 304.99934 * 4 3 2 7 7 N 1.46900 * 109.47148 * 65.00085 * 4 3 2 8 8 C 1.46896 * 111.00195 * 154.99709 * 7 4 3 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 4 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 7 11 11 C 1.38255 * 120.11174 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05063 * 359.76900 * 11 10 9 13 13 C 1.38710 * 119.94702 * 0.48231 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.76528 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 H 1.09006 * 109.46706 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46932 * 299.99005 * 1 2 3 28 28 H 1.08990 * 109.47188 * 59.99912 * 1 2 3 29 29 H 1.09001 * 109.46820 * 60.00333 * 3 2 1 30 30 H 1.08999 * 109.47374 * 300.00155 * 3 2 1 31 31 H 1.09001 * 109.46880 * 60.00217 * 6 4 3 32 32 H 1.09003 * 109.47273 * 179.97438 * 6 4 3 33 33 H 1.08994 * 109.47265 * 300.00279 * 6 4 3 34 34 H 1.00901 * 111.00271 * 278.95428 * 7 4 3 35 35 H 1.09005 * 109.46944 * 59.99947 * 8 7 4 36 36 H 1.09002 * 109.47398 * 300.00389 * 8 7 4 37 37 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97457 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.02763 * 180.24929 * 12 11 10 40 40 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 41 41 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 43 43 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 44 44 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 6 3.9790 0.3195 1.1806 7 7 3.9769 0.5629 -1.2562 8 6 5.3585 0.9457 -1.5760 9 6 5.7756 0.2897 -2.8670 10 6 6.3704 -0.9585 -2.8470 11 6 6.7537 -1.5632 -4.0297 12 6 6.5387 -0.9234 -5.2353 13 6 5.9470 0.3310 -5.2576 14 8 5.7389 0.9643 -6.4419 15 6 6.1597 0.2824 -7.6251 16 6 5.8449 1.1441 -8.8496 17 6 6.2881 0.4247 -10.0974 18 1 6.7479 -0.5498 -10.0244 19 6 6.1057 1.0101 -11.3323 20 7 6.4920 0.3821 -12.4213 21 14 5.3085 2.6948 -11.4587 22 1 6.3566 3.7446 -11.3921 23 1 4.5811 2.8027 -12.7488 24 1 4.3541 2.8763 -10.3356 25 6 5.5629 0.9355 -4.0693 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.5360 -0.6724 1.0910 32 1 5.0656 0.2331 1.1799 33 1 3.6515 0.7809 2.1122 34 1 3.8797 -0.4407 -1.2164 35 1 6.0206 0.6208 -0.7733 36 1 5.4203 2.0288 -1.6818 37 1 6.5351 -1.4622 -1.9060 38 1 7.2176 -2.5382 -4.0116 39 1 6.8346 -1.3979 -6.1593 40 1 7.2329 0.0983 -7.5761 41 1 5.6313 -0.6676 -7.7043 42 1 4.7716 1.3278 -8.8983 43 1 6.3730 2.0943 -8.7707 44 1 6.3640 0.7941 -13.2900 45 1 5.0983 1.9104 -4.0843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237166191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:13 Heat of formation + Delta-G solvation = -71.240026 kcal Electronic energy + Delta-G solvation = -22557.699802 eV Core-core repulsion = 19154.143163 eV Total energy + Delta-G solvation = -3403.556638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87664 -38.73413 -37.56181 -36.17638 -33.34872 -32.46525 -31.08835 -29.80501 -29.11489 -27.60805 -26.04296 -25.49506 -24.60534 -22.36692 -21.37665 -21.03928 -20.12339 -17.74879 -16.83716 -16.65927 -16.26637 -15.83360 -15.73824 -15.61550 -15.41509 -14.99044 -14.76478 -14.21979 -13.81163 -13.69197 -13.22701 -13.10134 -13.02351 -12.71610 -12.51119 -12.37449 -12.11355 -11.99370 -11.60510 -11.49998 -11.38240 -11.32152 -11.19420 -10.80459 -10.58460 -10.16948 -9.97760 -9.91042 -9.80242 -9.33474 -8.79038 -8.61708 -8.55194 -7.87454 -6.12819 -4.13639 1.43835 1.66261 3.29353 3.36548 3.42489 3.54406 3.71282 3.80981 4.18349 4.39934 4.55453 4.71964 4.86972 4.90742 4.98354 5.03937 5.08507 5.11860 5.17322 5.21349 5.28051 5.36345 5.38239 5.40104 5.46745 5.53660 5.60730 5.68042 5.84622 5.89891 5.94005 5.98454 6.17459 6.43448 6.54037 6.65806 6.66984 6.72108 6.90206 6.94959 7.13142 7.20721 7.24606 7.63582 7.95063 8.39579 8.87924 9.47546 10.99700 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.002581 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.700837 B =10847.677398 C =11653.437664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.071 3.929 4 C 0.086 3.914 5 H 0.089 0.911 6 C -0.179 4.179 7 N -0.674 5.674 8 C 0.101 3.899 9 C -0.051 4.051 10 C -0.164 4.164 11 C -0.080 4.080 12 C -0.209 4.209 13 C 0.143 3.857 14 O -0.320 6.320 15 C 0.073 3.927 16 C -0.009 4.009 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.350 0.650 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 0.164 28.771 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.006 4.006 4 C -0.025 4.025 5 H 0.108 0.892 6 C -0.238 4.238 7 N -0.306 5.306 8 C -0.027 4.027 9 C -0.052 4.052 10 C -0.183 4.183 11 C -0.098 4.098 12 C -0.228 4.228 13 C 0.096 3.904 14 O -0.233 6.233 15 C -0.001 4.001 16 C -0.046 4.046 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.157 4.157 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.591 0.695 28.114 28.884 hybrid contribution 0.039 0.262 0.282 0.387 sum -6.551 0.957 28.395 29.157 Atomic orbital electron populations 1.22706 0.81275 1.02616 0.99785 1.87859 1.19399 1.27842 1.95355 1.22602 0.92994 0.84923 1.00077 1.21630 0.93586 0.98748 0.88494 0.89247 1.22409 1.00994 1.01589 0.98800 1.60557 1.21490 1.15839 1.32702 1.20887 0.88676 1.00045 0.93128 1.19379 0.97573 0.94432 0.93770 1.20787 1.03795 0.95803 0.97902 1.20856 0.97999 0.99127 0.91837 1.21407 1.05779 0.96098 0.99537 1.19149 0.93491 0.91044 0.86702 1.86120 1.77881 1.46307 1.13006 1.23067 0.98627 0.96580 0.81863 1.19582 0.97937 0.95957 0.91164 1.20842 1.41178 1.05586 0.88815 0.90759 1.24937 0.94814 0.97787 0.95504 1.69893 1.47123 1.38536 0.98058 0.86753 0.80262 0.84483 0.77754 1.20070 1.21188 1.18715 1.20236 1.04556 1.01618 0.89330 0.89814 0.94479 0.93981 0.93410 0.92358 0.91373 0.92832 0.92293 0.83033 0.94285 0.90177 0.86758 0.86152 0.85164 0.92570 0.92525 0.95401 0.95857 0.92458 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.65 9.77 -35.23 -0.34 -3.99 16 3 C 0.07 0.57 5.77 37.16 0.21 0.79 16 4 C 0.09 0.67 2.99 -67.71 -0.20 0.47 16 5 H 0.09 0.62 7.80 -51.93 -0.40 0.21 16 6 C -0.18 -1.26 8.96 37.16 0.33 -0.92 16 7 N -0.67 -6.60 6.19 -107.99 -0.67 -7.27 16 8 C 0.10 0.98 5.61 -4.98 -0.03 0.95 16 9 C -0.05 -0.64 5.39 -104.65 -0.56 -1.20 16 10 C -0.16 -1.96 9.70 -39.56 -0.38 -2.35 16 11 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 12 C -0.21 -3.27 9.04 -39.43 -0.36 -3.63 16 13 C 0.14 2.46 6.69 -39.22 -0.26 2.20 16 14 O -0.32 -6.40 10.14 -19.43 -0.20 -6.60 16 15 C 0.07 1.52 4.68 37.16 0.17 1.70 16 16 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 17 C -0.53 -14.94 9.66 -34.44 -0.33 -15.27 16 18 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 21 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 C -0.14 -2.07 9.64 -39.43 -0.38 -2.45 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.55 7.55 -51.93 -0.39 0.16 16 32 H 0.05 0.36 7.45 -51.93 -0.39 -0.03 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.35 3.60 8.46 -39.29 -0.33 3.27 16 35 H 0.04 0.33 7.38 -51.93 -0.38 -0.05 16 36 H 0.08 0.75 8.00 -51.93 -0.42 0.33 16 37 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 40 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 41 H 0.06 1.15 7.65 -51.93 -0.40 0.75 16 42 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 43 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -31.15 369.69 -8.43 -39.57 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.60 Total: 0.47 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.29 Total: -18.17 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.11 Total: -33.91 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.54 Total: -10.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.15 -8.43 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237166191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.666 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds