Wall clock time and date at job start Tue Mar 31 2020 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99672 * 2 1 4 4 C 1.53001 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47085 * 185.00276 * 4 3 2 6 6 C 1.52998 * 109.47084 * 304.99934 * 4 3 2 7 7 N 1.46900 * 109.47148 * 65.00085 * 4 3 2 8 8 C 1.46896 * 111.00195 * 154.99709 * 7 4 3 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 4 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 7 11 11 C 1.38255 * 120.11174 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05063 * 359.76900 * 11 10 9 13 13 C 1.38710 * 119.94702 * 0.48231 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.76528 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 H 1.09006 * 109.46706 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46932 * 299.99005 * 1 2 3 28 28 H 1.08990 * 109.47188 * 59.99912 * 1 2 3 29 29 H 1.09001 * 109.46820 * 60.00333 * 3 2 1 30 30 H 1.08999 * 109.47374 * 300.00155 * 3 2 1 31 31 H 1.09001 * 109.46880 * 60.00217 * 6 4 3 32 32 H 1.09003 * 109.47273 * 179.97438 * 6 4 3 33 33 H 1.08994 * 109.47265 * 300.00279 * 6 4 3 34 34 H 1.00901 * 111.00271 * 278.95428 * 7 4 3 35 35 H 1.09005 * 109.46944 * 59.99947 * 8 7 4 36 36 H 1.09002 * 109.47398 * 300.00389 * 8 7 4 37 37 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97457 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.02763 * 180.24929 * 12 11 10 40 40 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 41 41 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 43 43 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 44 44 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 6 3.9790 0.3195 1.1806 7 7 3.9769 0.5629 -1.2562 8 6 5.3585 0.9457 -1.5760 9 6 5.7756 0.2897 -2.8670 10 6 6.3704 -0.9585 -2.8470 11 6 6.7537 -1.5632 -4.0297 12 6 6.5387 -0.9234 -5.2353 13 6 5.9470 0.3310 -5.2576 14 8 5.7389 0.9643 -6.4419 15 6 6.1597 0.2824 -7.6251 16 6 5.8449 1.1441 -8.8496 17 6 6.2881 0.4247 -10.0974 18 1 6.7479 -0.5498 -10.0244 19 6 6.1057 1.0101 -11.3323 20 7 6.4920 0.3821 -12.4213 21 14 5.3085 2.6948 -11.4587 22 1 6.3566 3.7446 -11.3921 23 1 4.5811 2.8027 -12.7488 24 1 4.3541 2.8763 -10.3356 25 6 5.5629 0.9355 -4.0693 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.5360 -0.6724 1.0910 32 1 5.0656 0.2331 1.1799 33 1 3.6515 0.7809 2.1122 34 1 3.8797 -0.4407 -1.2164 35 1 6.0206 0.6208 -0.7733 36 1 5.4203 2.0288 -1.6818 37 1 6.5351 -1.4622 -1.9060 38 1 7.2176 -2.5382 -4.0116 39 1 6.8346 -1.3979 -6.1593 40 1 7.2329 0.0983 -7.5761 41 1 5.6313 -0.6676 -7.7043 42 1 4.7716 1.3278 -8.8983 43 1 6.3730 2.0943 -8.7707 44 1 6.3640 0.7941 -13.2900 45 1 5.0983 1.9104 -4.0843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237166191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:12 Heat of formation + Delta-G solvation = -91.307009 kcal Electronic energy + Delta-G solvation = -22558.569972 eV Core-core repulsion = 19154.143163 eV Total energy + Delta-G solvation = -3404.426808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09325 -39.47150 -38.67258 -36.97289 -35.42282 -33.33796 -32.92949 -30.98801 -30.14815 -28.15317 -27.21827 -26.58700 -25.71184 -23.49882 -23.00575 -21.69329 -21.49899 -19.33941 -18.42702 -17.43327 -17.02408 -16.99087 -16.87874 -16.85144 -16.45558 -16.24542 -15.75393 -15.47329 -14.93636 -14.75279 -14.44315 -14.40790 -14.16542 -13.89019 -13.66551 -13.29953 -13.14686 -12.96111 -12.67052 -12.62907 -12.52959 -12.49179 -12.16531 -11.97770 -11.88142 -11.80208 -11.67464 -11.56455 -11.39880 -10.82650 -10.51912 -9.82170 -9.30270 -9.07952 -8.36031 -6.42888 0.35489 0.53841 1.35198 1.36787 1.49781 2.32407 2.33410 2.75913 2.98489 2.98793 3.38265 3.84942 3.92063 3.98830 4.13500 4.20653 4.21081 4.25891 4.29710 4.42968 4.43654 4.52048 4.53918 4.55640 4.62933 4.64911 4.69743 4.79810 4.85269 4.88636 4.97579 5.04612 5.08584 5.13961 5.28463 5.36231 5.43733 5.48009 5.54716 5.63338 5.89404 6.09363 6.15085 6.34259 6.47421 6.53798 6.62514 7.22310 8.79681 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.002581 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.700837 B =10847.677398 C =11653.437664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.069 3.931 4 C 0.085 3.915 5 H 0.101 0.899 6 C -0.171 4.171 7 N -0.687 5.687 8 C 0.106 3.894 9 C -0.045 4.045 10 C -0.152 4.152 11 C -0.080 4.080 12 C -0.225 4.225 13 C 0.106 3.894 14 O -0.337 6.337 15 C 0.088 3.912 16 C -0.006 4.006 17 C -0.537 4.537 18 H 0.042 0.958 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.252 1.252 25 C -0.148 4.148 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.347 0.653 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 0.982 31.676 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.008 4.008 4 C -0.024 4.024 5 H 0.119 0.881 6 C -0.230 4.230 7 N -0.319 5.319 8 C -0.022 4.022 9 C -0.046 4.046 10 C -0.171 4.171 11 C -0.098 4.098 12 C -0.244 4.244 13 C 0.061 3.939 14 O -0.252 6.252 15 C 0.013 3.987 16 C -0.043 4.043 17 C -0.575 4.575 18 H 0.060 0.940 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.772 3.228 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.175 1.175 25 C -0.167 4.167 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.011 1.509 31.051 31.868 hybrid contribution 0.181 -0.100 -0.480 0.523 sum -6.830 1.409 30.571 31.356 Atomic orbital electron populations 1.22824 0.80342 1.03296 1.00338 1.87828 1.20570 1.28660 1.95479 1.22672 0.93225 0.84552 1.00337 1.21706 0.93436 0.99325 0.87953 0.88065 1.22319 1.01198 1.00730 0.98753 1.60532 1.21473 1.15704 1.34149 1.20876 0.89140 1.00091 0.92084 1.19717 0.96385 0.94504 0.93986 1.21204 1.01724 0.95307 0.98851 1.21197 0.97414 1.00052 0.91142 1.21489 1.06441 0.95922 1.00523 1.19468 0.96038 0.92294 0.86115 1.86027 1.78797 1.46824 1.13516 1.22646 0.98661 0.95663 0.81714 1.19440 0.97563 0.96159 0.91176 1.21102 1.40854 1.04740 0.90805 0.94010 1.25883 0.95394 1.02181 0.95011 1.70024 1.48627 1.40664 0.98825 0.85671 0.79652 0.79200 0.78265 1.18859 1.20362 1.17537 1.20403 1.04830 1.01908 0.89544 0.89166 0.93047 0.94286 0.91646 0.93571 0.92589 0.92243 0.91360 0.83454 0.92200 0.89761 0.83434 0.83512 0.86021 0.92455 0.92653 0.95520 0.95483 0.92060 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.13 9.77 -148.98 -1.46 -8.58 16 3 C 0.07 1.00 5.77 71.98 0.42 1.41 16 4 C 0.09 1.14 2.99 44.92 0.13 1.27 16 5 H 0.10 1.11 7.80 -2.39 -0.02 1.09 16 6 C -0.17 -1.95 8.96 71.98 0.65 -1.30 16 7 N -0.69 -11.96 6.19 -495.58 -3.07 -15.02 16 8 C 0.11 1.77 5.61 85.56 0.48 2.25 16 9 C -0.05 -1.03 5.39 -19.88 -0.11 -1.14 16 10 C -0.15 -3.18 9.70 22.28 0.22 -2.96 16 11 C -0.08 -1.93 10.04 22.26 0.22 -1.70 16 12 C -0.22 -6.99 9.04 22.36 0.20 -6.79 16 13 C 0.11 3.68 6.69 22.50 0.15 3.83 16 14 O -0.34 -13.75 10.14 -92.43 -0.94 -14.69 16 15 C 0.09 3.78 4.68 71.98 0.34 4.11 16 16 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 17 C -0.54 -31.34 9.66 25.60 0.25 -31.09 16 18 H 0.04 2.62 7.99 -2.91 -0.02 2.60 16 19 C 0.01 0.79 5.47 84.65 0.46 1.26 16 20 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 21 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 22 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 25 C -0.15 -4.34 9.64 22.37 0.22 -4.12 16 26 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.79 7.55 -2.39 -0.02 0.77 16 32 H 0.06 0.60 7.45 -2.39 -0.02 0.59 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.35 6.39 8.46 -89.69 -0.76 5.63 16 35 H 0.06 0.77 7.38 -2.38 -0.02 0.76 16 36 H 0.08 1.35 8.00 -2.39 -0.02 1.34 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.70 8.06 -2.92 -0.02 2.67 16 39 H 0.12 3.89 6.30 -2.91 -0.02 3.87 16 40 H 0.06 2.40 7.67 -2.39 -0.02 2.38 16 41 H 0.06 2.34 7.65 -2.39 -0.02 2.32 16 42 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 43 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -68.14 369.69 1.87 -66.27 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.14 Total: 17.32 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 5.00 Total: -33.52 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -2.77 Total: -73.44 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -2.39 Total: -23.27 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -68.14 1.87 -66.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237166191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.042 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds