Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99516 * 2 1 4 4 C 1.53006 * 109.46744 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46923 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47078 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.09003 * 109.46659 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47406 * 299.99679 * 1 2 3 27 27 H 1.08993 * 109.47095 * 60.00406 * 1 2 3 28 28 H 1.09004 * 109.47234 * 60.00076 * 3 2 1 29 29 H 1.08995 * 109.47373 * 299.99620 * 3 2 1 30 30 H 1.08997 * 109.47216 * 60.00485 * 4 3 2 31 31 H 1.08996 * 109.47320 * 299.99572 * 4 3 2 32 32 H 1.08996 * 109.47046 * 59.99725 * 5 4 3 33 33 H 1.09006 * 109.46798 * 299.99994 * 5 4 3 34 34 H 1.00901 * 111.00271 * 303.95429 * 6 5 4 35 35 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 38 38 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 7 5.6221 2.4666 0.0013 7 6 6.2552 3.7921 0.0013 8 6 7.7537 3.6332 0.0019 9 6 8.4402 3.5600 1.2001 10 6 9.8150 3.4148 1.2040 11 6 10.5058 3.3357 0.0101 12 6 9.8202 3.4140 -1.1931 13 8 10.4981 3.3422 -2.3687 14 6 11.9170 3.1919 -2.2913 15 6 12.5011 3.1293 -3.7040 16 6 13.9974 2.9701 -3.6224 17 1 14.4832 2.9183 -2.6592 18 6 14.7462 2.8896 -4.7773 19 7 14.1546 2.9522 -5.9503 20 14 16.6011 2.6930 -4.6762 21 1 16.9270 1.4398 -3.9491 22 1 17.1678 2.6309 -6.0473 23 1 17.1828 3.8512 -3.9515 24 6 8.4404 3.5602 -1.1944 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8575 0.6437 -0.8891 31 1 3.8567 0.6440 0.8909 32 1 3.8356 3.1232 0.8912 33 1 3.8364 3.1236 -0.8888 34 1 5.9411 1.9132 0.7824 35 1 5.9480 4.3414 0.8913 36 1 5.9480 4.3415 -0.8887 37 1 7.9014 3.6165 2.1344 38 1 10.3490 3.3583 2.1411 39 1 11.5794 3.2174 0.0137 40 1 12.3439 4.0416 -1.7586 41 1 12.1563 2.2715 -1.7586 42 1 12.0742 2.2793 -4.2364 43 1 12.2618 4.0493 -4.2373 44 1 14.6813 2.8951 -6.7628 45 1 7.9038 3.6174 -2.1298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237219431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -78.827280 kcal Electronic energy + Delta-G solvation = -21807.602501 eV Core-core repulsion = 18403.716854 eV Total energy + Delta-G solvation = -3403.885646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81112 -38.47134 -37.67072 -36.26075 -33.38978 -32.92934 -30.91700 -30.39557 -29.12047 -27.34776 -25.84980 -24.92017 -23.66002 -22.35916 -21.83626 -21.54253 -20.12223 -17.62714 -16.90561 -16.70414 -16.26272 -15.95436 -15.65639 -15.62221 -15.34677 -15.28338 -14.63025 -14.50483 -14.43889 -13.73610 -13.52156 -12.93627 -12.69210 -12.56359 -12.29890 -12.29585 -12.06042 -11.96353 -11.45174 -11.40699 -11.32909 -11.24560 -11.19372 -10.84734 -10.71661 -10.42114 -10.08325 -9.84256 -9.64590 -9.29899 -8.81439 -8.60856 -8.43278 -7.82992 -6.08872 -4.13676 1.44891 1.68645 3.24152 3.29683 3.34017 3.35780 3.81462 3.87704 4.24445 4.41858 4.55677 4.73581 4.77503 4.84466 4.91430 4.94639 4.97772 5.06518 5.08479 5.18705 5.24433 5.27337 5.28729 5.34367 5.41984 5.47565 5.71153 5.75990 5.84552 5.87746 6.05216 6.07901 6.20074 6.55280 6.58676 6.67206 6.67675 6.74779 6.76565 7.00187 7.11112 7.52260 7.65872 7.82811 8.08520 8.25293 8.91660 9.50488 11.02608 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.002010 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.677191 B =13928.318362 C =14756.895273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.119 4.119 5 C 0.062 3.938 6 N -0.683 5.683 7 C 0.103 3.897 8 C -0.053 4.053 9 C -0.167 4.167 10 C -0.081 4.081 11 C -0.210 4.210 12 C 0.145 3.855 13 O -0.315 6.315 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.344 0.656 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.744 -0.143 15.850 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.157 4.157 5 C -0.067 4.067 6 N -0.314 5.314 7 C -0.025 4.025 8 C -0.053 4.053 9 C -0.186 4.186 10 C -0.099 4.099 11 C -0.229 4.229 12 C 0.098 3.902 13 O -0.228 6.228 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.157 4.157 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.624 -0.371 14.749 27.852 hybrid contribution 0.880 0.387 1.087 1.451 sum -22.743 0.016 15.836 27.714 Atomic orbital electron populations 1.22745 0.80959 1.02845 0.99954 1.87887 1.19757 1.28054 1.95418 1.22479 0.94126 0.84669 1.00151 1.21472 0.92470 0.97445 1.04276 1.21834 0.87863 0.96219 1.00769 1.60408 1.05161 1.15193 1.50671 1.20832 0.90152 0.90224 1.01282 1.19366 0.94277 0.99144 0.92547 1.20763 0.94354 1.06512 0.96922 1.20841 0.94018 0.97744 0.97285 1.21397 1.00914 1.08344 0.92288 1.19206 0.91928 0.93344 0.85762 1.86179 1.23413 1.86211 1.27011 1.23327 0.74899 0.99342 1.03314 1.19120 0.94877 0.98848 0.88347 1.20938 0.91137 1.51703 0.92823 0.92425 1.24989 0.98967 0.94948 0.95259 1.69970 1.35936 1.49422 0.97382 0.86541 0.84832 0.78769 0.77185 1.20104 1.21114 1.20108 1.20266 0.91140 1.05892 0.98436 0.89565 0.94142 0.93997 0.93481 0.93109 0.89878 0.91162 0.95198 0.90654 0.83742 0.94302 0.89967 0.86818 0.86232 0.85259 0.93167 0.93137 0.95358 0.95395 0.92656 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.58 10.70 -35.23 -0.38 -3.96 16 3 C 0.06 0.45 5.94 37.16 0.22 0.68 16 4 C -0.12 -0.93 5.84 -26.72 -0.16 -1.08 16 5 C 0.06 0.47 5.69 -3.82 -0.02 0.45 16 6 N -0.68 -6.52 6.49 -115.06 -0.75 -7.27 16 7 C 0.10 1.02 5.81 -4.98 -0.03 0.99 16 8 C -0.05 -0.67 5.39 -104.65 -0.56 -1.23 16 9 C -0.17 -1.99 9.70 -39.56 -0.38 -2.38 16 10 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 11 C -0.21 -3.33 9.04 -39.44 -0.36 -3.69 16 12 C 0.14 2.57 6.69 -39.22 -0.26 2.31 16 13 O -0.32 -6.62 10.14 -19.43 -0.20 -6.82 16 14 C 0.07 1.42 4.68 37.16 0.17 1.59 16 15 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.34 3.11 8.72 -39.29 -0.34 2.77 16 35 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.13 2.02 6.30 -52.48 -0.33 1.68 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -31.27 377.15 -9.29 -40.57 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.77 Total: -0.65 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.60 Total: -18.03 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: -0.01 Total: -33.14 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.57 Total: -10.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.27 -9.29 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237219431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.257 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds