Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99516 * 2 1 4 4 C 1.53006 * 109.46744 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46923 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47078 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.09003 * 109.46659 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47406 * 299.99679 * 1 2 3 27 27 H 1.08993 * 109.47095 * 60.00406 * 1 2 3 28 28 H 1.09004 * 109.47234 * 60.00076 * 3 2 1 29 29 H 1.08995 * 109.47373 * 299.99620 * 3 2 1 30 30 H 1.08997 * 109.47216 * 60.00485 * 4 3 2 31 31 H 1.08996 * 109.47320 * 299.99572 * 4 3 2 32 32 H 1.08996 * 109.47046 * 59.99725 * 5 4 3 33 33 H 1.09006 * 109.46798 * 299.99994 * 5 4 3 34 34 H 1.00901 * 111.00271 * 303.95429 * 6 5 4 35 35 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 38 38 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 7 5.6221 2.4666 0.0013 7 6 6.2552 3.7921 0.0013 8 6 7.7537 3.6332 0.0019 9 6 8.4402 3.5600 1.2001 10 6 9.8150 3.4148 1.2040 11 6 10.5058 3.3357 0.0101 12 6 9.8202 3.4140 -1.1931 13 8 10.4981 3.3422 -2.3687 14 6 11.9170 3.1919 -2.2913 15 6 12.5011 3.1293 -3.7040 16 6 13.9974 2.9701 -3.6224 17 1 14.4832 2.9183 -2.6592 18 6 14.7462 2.8896 -4.7773 19 7 14.1546 2.9522 -5.9503 20 14 16.6011 2.6930 -4.6762 21 1 16.9270 1.4398 -3.9491 22 1 17.1678 2.6309 -6.0473 23 1 17.1828 3.8512 -3.9515 24 6 8.4404 3.5602 -1.1944 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8575 0.6437 -0.8891 31 1 3.8567 0.6440 0.8909 32 1 3.8356 3.1232 0.8912 33 1 3.8364 3.1236 -0.8888 34 1 5.9411 1.9132 0.7824 35 1 5.9480 4.3414 0.8913 36 1 5.9480 4.3415 -0.8887 37 1 7.9014 3.6165 2.1344 38 1 10.3490 3.3583 2.1411 39 1 11.5794 3.2174 0.0137 40 1 12.3439 4.0416 -1.7586 41 1 12.1563 2.2715 -1.7586 42 1 12.0742 2.2793 -4.2364 43 1 12.2618 4.0493 -4.2373 44 1 14.6813 2.8951 -6.7628 45 1 7.9038 3.6174 -2.1298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237219431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -98.842415 kcal Electronic energy + Delta-G solvation = -21808.470422 eV Core-core repulsion = 18403.716854 eV Total energy + Delta-G solvation = -3404.753568 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07264 -39.14744 -38.78714 -37.11670 -35.47047 -33.73376 -32.58203 -31.47478 -30.50250 -27.94244 -27.08665 -26.35714 -24.46742 -23.51284 -23.22696 -22.43507 -21.47733 -19.10714 -18.15162 -17.51473 -17.27961 -16.98322 -16.93941 -16.85681 -16.46834 -16.32623 -16.19194 -15.35220 -15.12968 -14.76568 -14.49028 -14.32397 -14.24352 -14.05615 -13.55001 -13.09336 -13.02592 -12.87426 -12.69185 -12.63878 -12.56191 -12.50067 -12.29173 -11.99015 -11.84901 -11.78647 -11.58735 -11.57081 -11.38328 -10.62140 -10.61701 -9.83133 -9.36910 -9.07871 -8.26611 -6.40846 0.35129 0.54363 1.40830 1.45101 1.53142 2.27580 2.51464 2.64650 2.87845 3.07515 3.50317 3.83173 3.93184 4.01375 4.13556 4.22360 4.23783 4.25220 4.26170 4.36111 4.42210 4.47758 4.51408 4.55289 4.56892 4.59478 4.69961 4.73106 4.75779 4.85831 4.87558 5.11753 5.16864 5.22470 5.31000 5.45237 5.45902 5.53108 5.61512 5.68427 5.89959 6.04197 6.08005 6.24604 6.44291 6.58347 6.73641 7.29308 8.86285 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.002010 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.677191 B =13928.318362 C =14756.895273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.062 3.938 4 C -0.114 4.114 5 C 0.068 3.932 6 N -0.699 5.699 7 C 0.108 3.892 8 C -0.047 4.047 9 C -0.152 4.152 10 C -0.078 4.078 11 C -0.223 4.223 12 C 0.104 3.896 13 O -0.343 6.343 14 C 0.085 3.915 15 C 0.028 3.972 16 C -0.549 4.549 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.153 4.153 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.348 0.652 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.058 0.942 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.260 0.203 18.886 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.015 4.015 4 C -0.152 4.152 5 C -0.061 4.061 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.047 4.047 9 C -0.170 4.170 10 C -0.096 4.096 11 C -0.242 4.242 12 C 0.059 3.941 13 O -0.258 6.258 14 C 0.011 3.989 15 C -0.009 4.009 16 C -0.587 4.587 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.172 4.172 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.169 -0.022 17.811 30.023 hybrid contribution 0.853 0.279 0.217 0.923 sum -23.316 0.257 18.028 29.474 Atomic orbital electron populations 1.22915 0.79491 1.03724 1.00921 1.87841 1.21531 1.29210 1.95636 1.22531 0.93465 0.84284 1.01183 1.21402 0.93196 0.97467 1.03104 1.21804 0.86573 0.96048 1.01642 1.60354 1.06411 1.15149 1.51247 1.20812 0.88074 0.90683 1.02456 1.19702 0.95888 0.97432 0.91712 1.21225 0.94088 1.03679 0.98032 1.21231 0.94741 0.96304 0.97324 1.21507 1.00983 1.09024 0.92690 1.19547 0.92753 0.96514 0.85329 1.86084 1.22624 1.87594 1.29480 1.22844 0.75966 1.00126 0.99955 1.18966 0.95182 0.95947 0.90848 1.21376 0.91897 1.51715 0.93664 0.91073 1.26063 1.04784 0.94194 0.94672 1.70123 1.38216 1.50314 0.98304 0.85314 0.77725 0.79412 0.77469 1.18854 1.20732 1.18767 1.20419 0.90445 1.06754 0.99597 0.88869 0.92906 0.93255 0.91914 0.92511 0.92024 0.91346 0.93280 0.90653 0.83360 0.91737 0.90167 0.82987 0.83075 0.85629 0.92188 0.92333 0.98443 0.98335 0.92434 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.35 10.70 -148.98 -1.59 -8.95 16 3 C 0.06 0.81 5.94 71.98 0.43 1.24 16 4 C -0.11 -1.66 5.84 30.60 0.18 -1.48 16 5 C 0.07 0.88 5.69 86.31 0.49 1.37 16 6 N -0.70 -11.96 6.49 -517.93 -3.36 -15.33 16 7 C 0.11 1.85 5.81 85.56 0.50 2.35 16 8 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 9 C -0.15 -3.08 9.70 22.28 0.22 -2.87 16 10 C -0.08 -1.82 10.04 22.25 0.22 -1.60 16 11 C -0.22 -6.94 9.04 22.36 0.20 -6.73 16 12 C 0.10 3.79 6.69 22.50 0.15 3.94 16 13 O -0.34 -15.27 10.14 -92.43 -0.94 -16.20 16 14 C 0.09 3.88 4.68 71.98 0.34 4.21 16 15 C 0.03 1.56 5.34 29.85 0.16 1.72 16 16 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 20 Si 0.98 43.90 29.54 68.60 2.03 45.92 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 C -0.15 -4.79 9.64 22.37 0.22 -4.58 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.35 5.44 8.72 -89.69 -0.78 4.65 16 35 H 0.06 0.81 8.08 -2.38 -0.02 0.79 16 36 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 40 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 41 H 0.06 2.51 7.65 -2.39 -0.02 2.49 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -70.36 377.15 1.52 -68.84 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.17 Total: 15.64 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 4.93 Total: -32.85 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -3.08 Total: -72.40 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -2.53 Total: -25.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.36 1.52 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237219431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.003 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds