Wall clock time and date at job start Tue Mar 31 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47584 * 2 1 4 4 C 1.53000 * 109.46912 * 120.00275 * 2 1 3 5 5 O 1.42902 * 109.46929 * 294.99363 * 4 2 1 6 6 C 1.53006 * 109.47044 * 239.99736 * 2 1 3 7 7 N 1.46900 * 109.47078 * 65.00174 * 6 2 1 8 8 C 1.46896 * 111.00195 * 179.97438 * 7 6 2 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 6 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 7 11 11 C 1.38255 * 120.11174 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05063 * 359.76900 * 11 10 9 13 13 C 1.38710 * 119.94702 * 0.48231 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.76528 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 H 1.08997 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47368 * 300.00025 * 1 2 3 28 28 H 1.08998 * 109.46902 * 60.00063 * 1 2 3 29 29 H 1.08999 * 109.47719 * 54.99751 * 4 2 1 30 30 H 1.09003 * 109.47078 * 175.00170 * 4 2 1 31 31 H 0.96701 * 114.00118 * 180.02562 * 5 4 2 32 32 H 1.08996 * 109.47046 * 304.99843 * 6 2 1 33 33 H 1.09006 * 109.46798 * 185.00112 * 6 2 1 34 34 H 1.00903 * 110.99490 * 56.04411 * 7 6 2 35 35 H 1.09005 * 109.46944 * 59.99947 * 8 7 6 36 36 H 1.09002 * 109.47398 * 300.00389 * 8 7 6 37 37 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97457 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.02763 * 180.24929 * 12 11 10 40 40 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 41 41 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 43 43 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6620 0.0168 2.4130 6 6 2.0400 -0.7213 -1.2493 7 7 1.6514 0.0373 -2.4457 8 6 2.1257 -0.6266 -3.6672 9 6 1.7087 0.1785 -4.8709 10 6 0.4942 -0.0722 -5.4826 11 6 0.1085 0.6650 -6.5868 12 6 0.9341 1.6576 -7.0788 13 6 2.1552 1.9075 -6.4701 14 8 2.9711 2.8801 -6.9551 15 6 2.5106 3.6026 -8.0987 16 6 3.5547 4.6479 -8.4960 17 6 3.0689 5.4104 -9.7016 18 1 2.1109 5.1734 -10.1404 19 6 3.8468 6.4112 -10.2440 20 7 5.0132 6.7001 -9.7094 21 14 3.2448 7.3558 -11.7389 22 1 1.9124 6.8417 -12.1456 23 1 3.1368 8.7982 -11.4026 24 1 4.2064 7.1788 -12.8565 25 6 2.5398 1.1665 -5.3618 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7199 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.9532 -0.3829 3.2440 32 1 1.6054 -1.7199 -1.2951 33 1 3.1264 -0.7996 -1.2055 34 1 1.9882 0.9872 -2.3966 35 1 1.6920 -1.6247 -3.7300 36 1 3.2127 -0.7039 -3.6401 37 1 -0.1546 -0.8446 -5.0968 38 1 -0.8407 0.4676 -7.0626 39 1 0.6306 2.2360 -7.9389 40 1 2.3547 2.9112 -8.9268 41 1 1.5710 4.1008 -7.8596 42 1 3.7102 5.3393 -7.6677 43 1 4.4945 4.1502 -8.7350 44 1 5.5603 7.4045 -10.0908 45 1 3.4882 1.3618 -4.8837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237449514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:06 Heat of formation + Delta-G solvation = -87.290419 kcal Electronic energy + Delta-G solvation = -22207.364449 eV Core-core repulsion = 18803.111814 eV Total energy + Delta-G solvation = -3404.252636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82723 -38.36656 -37.46378 -36.14140 -33.58750 -33.32618 -30.96806 -30.53392 -29.13834 -26.91837 -26.21924 -24.97357 -23.66546 -22.25752 -21.69632 -20.66506 -20.05326 -17.87659 -17.52076 -16.29584 -16.16781 -15.80666 -15.60615 -15.39253 -15.24480 -15.02687 -14.62672 -14.47329 -13.96164 -13.78357 -13.13766 -12.80756 -12.75960 -12.59049 -12.39775 -12.35449 -12.24067 -11.47033 -11.44446 -11.34458 -11.26417 -11.09096 -10.95868 -10.88776 -10.68987 -10.45097 -10.36151 -9.86226 -9.66458 -9.29313 -8.85048 -8.56996 -8.45992 -7.83164 -6.11324 -4.15864 1.43466 1.70355 3.26024 3.33070 3.36746 3.55487 3.82863 3.96278 4.33336 4.40493 4.51845 4.68807 4.77034 4.83131 4.96223 5.06614 5.09836 5.21297 5.25198 5.28116 5.31359 5.44214 5.45752 5.50404 5.59905 5.66552 5.82593 5.86877 5.99130 6.03189 6.06446 6.18033 6.19583 6.55014 6.56475 6.66884 6.73030 6.75220 6.99364 7.11032 7.23151 7.50145 7.63073 7.80873 8.05928 8.23106 8.89958 9.48538 11.00294 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.002196 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.905803 B =12749.142373 C =13412.550477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 H 0.077 0.923 4 C 0.081 3.919 5 O -0.572 6.572 6 C 0.065 3.935 7 N -0.681 5.681 8 C 0.103 3.897 9 C -0.052 4.052 10 C -0.149 4.149 11 C -0.082 4.082 12 C -0.210 4.210 13 C 0.145 3.855 14 O -0.317 6.317 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.156 4.156 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.378 0.622 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.346 0.654 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -18.210 18.815 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.096 0.904 4 C 0.002 3.998 5 O -0.377 6.377 6 C -0.065 4.065 7 N -0.312 5.312 8 C -0.025 4.025 9 C -0.052 4.052 10 C -0.167 4.167 11 C -0.100 4.100 12 C -0.229 4.229 13 C 0.098 3.902 14 O -0.230 6.230 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.176 4.176 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.225 0.775 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.873 -17.911 18.367 26.835 hybrid contribution 0.822 0.408 -0.594 1.093 sum -7.051 -17.504 17.773 25.922 Atomic orbital electron populations 1.21653 0.93704 1.01543 1.02265 1.21102 0.97856 1.00233 0.91829 0.90449 1.22181 0.97746 0.94151 0.85681 1.86489 1.81522 1.53317 1.16339 1.21908 0.97452 0.97838 0.89266 1.60451 1.64179 1.06064 1.00541 1.20826 0.97553 0.97093 0.87057 1.19371 0.94354 0.95808 0.95700 1.20756 0.96541 1.02035 0.97405 1.20901 0.98751 0.94603 0.95712 1.21399 0.95558 1.02394 1.03557 1.19142 0.89533 0.88803 0.92732 1.86167 1.44450 1.45473 1.46896 1.23325 1.00205 0.93709 0.83625 1.19129 0.93513 0.91823 0.96769 1.21011 1.04592 1.18088 1.12700 0.92297 1.25002 0.94835 0.96977 0.97459 1.69990 1.11010 1.31041 1.40719 0.86423 0.78859 0.79684 0.82378 1.19630 1.20830 1.20838 1.20271 1.01495 0.98222 0.97572 0.93375 0.92714 0.91311 0.93599 0.93839 0.77508 0.90775 0.95129 0.83554 0.90127 0.94229 0.86374 0.86173 0.85280 0.93143 0.93119 0.95402 0.95417 0.92760 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.98 37.16 0.33 -0.84 16 2 C -0.09 -0.73 2.77 -90.62 -0.25 -0.98 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.08 0.54 6.43 37.16 0.24 0.78 16 5 O -0.57 -4.37 13.20 -35.23 -0.46 -4.84 16 6 C 0.06 0.49 5.07 -3.82 -0.02 0.47 16 7 N -0.68 -6.37 5.94 -115.06 -0.68 -7.06 16 8 C 0.10 1.00 5.81 -4.98 -0.03 0.98 16 9 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 10 C -0.15 -1.84 9.70 -39.56 -0.38 -2.22 16 11 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 12 C -0.21 -3.32 9.04 -39.43 -0.36 -3.68 16 13 C 0.14 2.54 6.69 -39.22 -0.26 2.27 16 14 O -0.32 -6.57 10.14 -19.43 -0.20 -6.77 16 15 C 0.07 1.41 4.68 37.16 0.17 1.59 16 16 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 17 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.16 -2.34 9.64 -39.43 -0.38 -2.72 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.51 7.82 -51.93 -0.41 0.11 16 28 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.38 1.16 9.12 45.56 0.42 1.58 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.35 3.41 8.72 -39.29 -0.34 3.06 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -31.56 374.13 -9.34 -40.90 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.89 Total: 1.58 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.46 Total: -19.96 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.05 Total: -32.85 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.66 Total: -11.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.56 -9.34 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237449514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.387 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds