Wall clock time and date at job start Tue Mar 31 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47584 * 2 1 4 4 C 1.53000 * 109.46912 * 120.00275 * 2 1 3 5 5 O 1.42902 * 109.46929 * 294.99363 * 4 2 1 6 6 C 1.53006 * 109.47044 * 239.99736 * 2 1 3 7 7 N 1.46900 * 109.47078 * 65.00174 * 6 2 1 8 8 C 1.46896 * 111.00195 * 179.97438 * 7 6 2 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 6 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 7 11 11 C 1.38255 * 120.11174 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05063 * 359.76900 * 11 10 9 13 13 C 1.38710 * 119.94702 * 0.48231 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.76528 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 H 1.08997 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47368 * 300.00025 * 1 2 3 28 28 H 1.08998 * 109.46902 * 60.00063 * 1 2 3 29 29 H 1.08999 * 109.47719 * 54.99751 * 4 2 1 30 30 H 1.09003 * 109.47078 * 175.00170 * 4 2 1 31 31 H 0.96701 * 114.00118 * 180.02562 * 5 4 2 32 32 H 1.08996 * 109.47046 * 304.99843 * 6 2 1 33 33 H 1.09006 * 109.46798 * 185.00112 * 6 2 1 34 34 H 1.00903 * 110.99490 * 56.04411 * 7 6 2 35 35 H 1.09005 * 109.46944 * 59.99947 * 8 7 6 36 36 H 1.09002 * 109.47398 * 300.00389 * 8 7 6 37 37 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97457 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.02763 * 180.24929 * 12 11 10 40 40 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 41 41 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 43 43 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6620 0.0168 2.4130 6 6 2.0400 -0.7213 -1.2493 7 7 1.6514 0.0373 -2.4457 8 6 2.1257 -0.6266 -3.6672 9 6 1.7087 0.1785 -4.8709 10 6 0.4942 -0.0722 -5.4826 11 6 0.1085 0.6650 -6.5868 12 6 0.9341 1.6576 -7.0788 13 6 2.1552 1.9075 -6.4701 14 8 2.9711 2.8801 -6.9551 15 6 2.5106 3.6026 -8.0987 16 6 3.5547 4.6479 -8.4960 17 6 3.0689 5.4104 -9.7016 18 1 2.1109 5.1734 -10.1404 19 6 3.8468 6.4112 -10.2440 20 7 5.0132 6.7001 -9.7094 21 14 3.2448 7.3558 -11.7389 22 1 1.9124 6.8417 -12.1456 23 1 3.1368 8.7982 -11.4026 24 1 4.2064 7.1788 -12.8565 25 6 2.5398 1.1665 -5.3618 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7199 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.9532 -0.3829 3.2440 32 1 1.6054 -1.7199 -1.2951 33 1 3.1264 -0.7996 -1.2055 34 1 1.9882 0.9872 -2.3966 35 1 1.6920 -1.6247 -3.7300 36 1 3.2127 -0.7039 -3.6401 37 1 -0.1546 -0.8446 -5.0968 38 1 -0.8407 0.4676 -7.0626 39 1 0.6306 2.2360 -7.9389 40 1 2.3547 2.9112 -8.9268 41 1 1.5710 4.1008 -7.8596 42 1 3.7102 5.3393 -7.6677 43 1 4.4945 4.1502 -8.7350 44 1 5.5603 7.4045 -10.0908 45 1 3.4882 1.3618 -4.8837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237449514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:05 Heat of formation + Delta-G solvation = -108.923668 kcal Electronic energy + Delta-G solvation = -22208.302538 eV Core-core repulsion = 18803.111814 eV Total energy + Delta-G solvation = -3405.190724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08197 -39.16895 -38.50791 -36.88981 -35.48768 -34.28316 -32.59129 -31.68416 -30.54220 -27.62650 -27.19483 -26.67726 -24.49209 -23.39562 -23.31552 -21.66621 -21.07451 -19.13554 -18.34284 -18.08775 -17.11641 -16.95301 -16.86399 -16.64961 -16.44315 -16.05063 -15.78571 -15.49531 -14.77285 -14.57354 -14.35889 -14.35125 -14.19271 -13.88968 -13.43415 -13.18833 -13.06833 -13.00158 -12.94980 -12.61130 -12.54906 -12.33208 -12.09717 -11.92756 -11.71838 -11.59712 -11.56394 -11.55046 -11.37051 -10.85749 -10.64304 -9.86810 -9.34286 -9.08822 -8.28274 -6.41976 0.34305 0.55031 1.40138 1.41166 1.54725 2.26220 2.50279 2.73569 3.06129 3.15796 3.68229 3.81738 3.91785 3.96471 4.11174 4.15107 4.22686 4.25274 4.27864 4.36363 4.45148 4.55490 4.57551 4.61586 4.68120 4.71413 4.73265 4.77627 4.84404 5.00081 5.12415 5.17189 5.30410 5.35850 5.43254 5.44883 5.48817 5.53447 5.64852 5.67798 5.90208 6.03707 6.07271 6.34580 6.56893 6.72981 6.92807 7.28210 8.85091 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.002196 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.905803 B =12749.142373 C =13412.550477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 H 0.059 0.941 4 C 0.081 3.919 5 O -0.595 6.595 6 C 0.070 3.930 7 N -0.688 5.688 8 C 0.107 3.893 9 C -0.045 4.045 10 C -0.139 4.139 11 C -0.080 4.080 12 C -0.223 4.223 13 C 0.105 3.895 14 O -0.343 6.343 15 C 0.085 3.915 16 C 0.028 3.972 17 C -0.545 4.545 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.977 3.023 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.164 4.164 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.396 0.604 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.340 0.660 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.058 0.942 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 -20.130 19.007 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.003 3.997 5 O -0.403 6.403 6 C -0.059 4.059 7 N -0.319 5.319 8 C -0.021 4.021 9 C -0.046 4.046 10 C -0.158 4.158 11 C -0.098 4.098 12 C -0.242 4.242 13 C 0.060 3.940 14 O -0.257 6.257 15 C 0.011 3.989 16 C -0.009 4.009 17 C -0.583 4.583 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.801 3.199 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.677 -19.865 18.590 28.877 hybrid contribution 1.358 0.890 -0.497 1.698 sum -8.319 -18.976 18.093 27.507 Atomic orbital electron populations 1.21580 0.94286 1.01703 1.01025 1.21093 0.97304 0.99646 0.93036 0.92201 1.22191 0.98399 0.94319 0.84776 1.86439 1.81962 1.54338 1.17608 1.21900 0.97957 0.97897 0.88136 1.60472 1.64333 1.06003 1.01050 1.20839 0.98022 0.97248 0.85967 1.19692 0.93906 0.94744 0.96236 1.21178 0.96410 1.01783 0.96421 1.21250 0.99320 0.93410 0.95776 1.21501 0.95452 1.03495 1.03765 1.19493 0.90517 0.89457 0.94527 1.86075 1.45908 1.46989 1.46754 1.22841 0.98399 0.92973 0.84684 1.18970 0.93829 0.92410 0.95725 1.21426 1.05174 1.18513 1.13204 0.91122 1.26066 0.94843 0.98026 1.00910 1.70131 1.12462 1.31844 1.42580 0.85214 0.78843 0.77957 0.77908 1.18121 1.20221 1.20175 1.20446 1.02139 0.98734 0.97055 0.92448 0.93863 0.92575 0.92132 0.92818 0.75385 0.89549 0.94385 0.84201 0.88199 0.93804 0.83350 0.83267 0.85683 0.92246 0.92341 0.98380 0.98315 0.92426 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.98 71.98 0.65 -1.44 16 2 C -0.09 -1.35 2.77 -10.79 -0.03 -1.38 16 3 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.08 0.93 6.43 71.98 0.46 1.39 16 5 O -0.60 -8.34 13.20 -148.98 -1.97 -10.31 16 6 C 0.07 0.90 5.07 86.31 0.44 1.34 16 7 N -0.69 -11.54 5.94 -517.93 -3.08 -14.62 16 8 C 0.11 1.82 5.81 85.56 0.50 2.31 16 9 C -0.05 -1.05 5.39 -19.88 -0.11 -1.16 16 10 C -0.14 -3.02 9.70 22.28 0.22 -2.80 16 11 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 12 C -0.22 -6.95 9.04 22.36 0.20 -6.75 16 13 C 0.11 3.76 6.69 22.50 0.15 3.91 16 14 O -0.34 -14.92 10.14 -92.43 -0.94 -15.86 16 15 C 0.09 3.83 4.68 71.98 0.34 4.17 16 16 C 0.03 1.55 5.34 29.85 0.16 1.71 16 17 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 18 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 21 Si 0.98 43.83 29.54 68.60 2.03 45.86 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.16 -4.92 9.64 22.37 0.22 -4.70 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.04 0.79 7.82 -2.39 -0.02 0.77 16 28 H 0.06 1.04 7.75 -2.39 -0.02 1.02 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.40 1.86 9.12 -74.06 -0.68 1.18 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.34 6.41 8.72 -89.69 -0.78 5.62 16 35 H 0.10 1.35 8.08 -2.38 -0.02 1.33 16 36 H 0.04 0.72 8.09 -2.39 -0.02 0.70 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.15 2.69 8.06 -2.92 -0.02 2.66 16 39 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 40 H 0.06 2.51 7.67 -2.39 -0.02 2.49 16 41 H 0.06 2.48 7.65 -2.39 -0.02 2.46 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -69.97 374.13 -0.05 -70.02 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.49 Total: 17.24 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.11 Total: -35.54 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -2.79 Total: -71.41 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -2.90 Total: -26.17 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.97 -0.05 -70.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237449514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.907 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds