Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99602 * 2 1 4 4 C 1.53007 * 109.46839 * 293.95084 * 3 2 1 5 5 C 1.50695 * 109.46989 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99978 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99579 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99877 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47136 * 89.99884 * 9 7 5 11 11 H 1.48508 * 109.46755 * 209.99742 * 9 7 5 12 12 H 1.48493 * 109.47142 * 329.99467 * 9 7 5 13 13 C 1.46906 * 110.99902 * 123.94735 * 2 1 3 14 14 C 1.52999 * 109.46714 * 164.00873 * 13 2 1 15 15 H 1.09003 * 109.47243 * 58.53435 * 14 13 2 16 16 O 1.42893 * 109.47364 * 298.53120 * 14 13 2 17 17 C 1.53003 * 109.46908 * 178.53090 * 14 13 2 18 18 O 1.42901 * 109.47029 * 184.99878 * 17 14 13 19 19 C 1.42905 * 113.99623 * 179.97438 * 18 17 14 20 20 C 1.50703 * 109.46809 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99592 * 90.00215 * 20 19 18 22 22 C 1.38239 * 119.99995 * 179.97438 * 21 20 19 23 23 C 1.38237 * 119.99925 * 0.09578 * 22 21 20 24 24 C 1.38241 * 120.00012 * 359.86105 * 23 22 21 25 25 C 1.38229 * 120.00365 * 269.98213 * 20 19 18 26 26 H 1.09003 * 109.47666 * 302.02577 * 1 2 3 27 27 H 1.08998 * 109.47370 * 62.03008 * 1 2 3 28 28 H 1.09001 * 109.46860 * 182.02729 * 1 2 3 29 29 H 1.08999 * 109.47459 * 53.94773 * 3 2 1 30 30 H 1.09000 * 109.47201 * 173.95428 * 3 2 1 31 31 H 1.08999 * 109.46841 * 300.00068 * 4 3 2 32 32 H 1.09000 * 109.46943 * 60.00186 * 4 3 2 33 33 H 0.97003 * 119.99219 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47029 * 44.00785 * 13 2 1 35 35 H 1.09002 * 109.46999 * 284.00566 * 13 2 1 36 36 H 0.96694 * 114.00104 * 300.00717 * 16 14 13 37 37 H 1.09006 * 109.46689 * 65.00100 * 17 14 13 38 38 H 1.08998 * 109.47547 * 305.00099 * 17 14 13 39 39 H 1.09003 * 109.47048 * 60.00926 * 19 18 17 40 40 H 1.08993 * 109.47233 * 299.99843 * 19 18 17 41 41 H 1.07999 * 120.00545 * 359.70024 * 21 20 19 42 42 H 1.08002 * 120.00208 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.00415 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00148 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.99828 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 -1.3184 5 6 2.1718 3.4641 -1.3187 6 1 2.7197 3.8323 -0.4639 7 6 1.9659 4.2815 -2.4098 8 7 1.2982 3.8333 -3.4504 9 14 2.6365 6.0250 -2.4104 10 1 4.0079 6.0277 -2.9800 11 1 1.7568 6.8933 -3.2337 12 1 2.6776 6.5401 -1.0183 13 6 1.9954 -0.7659 1.1377 14 6 3.4728 -1.0839 0.8985 15 1 4.0283 -0.1549 0.7701 16 8 3.6034 -1.8835 -0.2786 17 6 4.0306 -1.8498 2.0998 18 8 5.4359 -2.0451 1.9294 19 6 6.0585 -2.7541 3.0026 20 6 7.5311 -2.9026 2.7190 21 6 8.4189 -1.9347 3.1502 22 6 9.7699 -2.0711 2.8905 23 6 10.2327 -3.1744 2.1981 24 6 9.3449 -4.1428 1.7677 25 6 7.9941 -4.0068 2.0282 26 1 -0.3634 0.5450 0.8713 27 1 -0.3634 0.4820 -0.9076 28 1 -0.3633 -1.0270 0.0364 29 1 1.5609 1.9274 0.8308 30 1 3.0796 1.3446 0.1082 31 1 2.0657 1.5015 -2.1492 32 1 0.5470 2.0844 -1.4266 33 1 1.1537 4.4083 -4.2182 34 1 1.4356 -1.6955 1.2401 35 1 1.8934 -0.1779 2.0499 36 1 3.1332 -2.7273 -0.2350 37 1 3.5356 -2.8181 2.1749 38 1 3.8510 -1.2783 3.0104 39 1 5.6057 -3.7412 3.0969 40 1 5.9210 -2.2009 3.9316 41 1 8.0568 -1.0698 3.6859 42 1 10.4635 -1.3148 3.2270 43 1 11.2880 -3.2809 1.9948 44 1 9.7065 -5.0049 1.2271 45 1 7.3004 -4.7629 1.6914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265184665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -72.093092 kcal Electronic energy + Delta-G solvation = -22741.924680 eV Core-core repulsion = 19338.331050 eV Total energy + Delta-G solvation = -3403.593630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.61558 -38.62622 -37.26538 -35.67921 -32.97054 -32.28150 -31.12119 -30.53035 -29.37124 -26.87315 -25.76859 -24.97275 -22.80835 -22.61399 -21.70225 -21.28571 -19.76369 -17.18230 -17.07601 -16.54216 -16.25077 -16.03531 -15.51996 -15.35854 -15.00003 -14.62487 -14.34324 -14.19631 -13.68562 -13.63421 -13.53131 -13.05811 -12.93891 -12.30622 -12.23968 -12.09718 -12.03195 -11.59391 -11.27361 -11.25208 -11.21075 -11.09368 -10.89412 -10.54629 -10.49836 -9.85528 -9.76771 -9.74711 -9.32351 -9.13258 -9.06140 -9.04390 -8.27726 -7.68769 -5.94278 -3.96371 1.03888 1.18968 3.26942 3.36090 3.41788 3.44708 3.79760 4.36760 4.51480 4.56463 4.62350 4.71816 4.78662 4.88579 4.97813 5.01978 5.06184 5.15807 5.23809 5.30726 5.35218 5.40689 5.41607 5.42559 5.68413 5.73664 5.76753 5.81217 5.94765 6.18692 6.21720 6.27904 6.27956 6.36765 6.44414 6.53239 6.75575 7.01530 7.02979 7.50838 7.57360 7.81749 7.96081 7.98407 8.15017 8.48992 9.10839 9.66785 11.17228 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.002823 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.471806 B = 9914.406771 C =11234.929558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.532 5.532 3 C 0.061 3.939 4 C 0.029 3.971 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.027 3.973 14 C 0.115 3.885 15 H 0.108 0.892 16 O -0.532 6.532 17 C 0.031 3.969 18 O -0.367 6.367 19 C 0.101 3.899 20 C -0.089 4.089 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.097 4.097 26 H 0.017 0.983 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.363 0.637 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 -17.795 15.940 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.256 5.256 3 C -0.066 4.066 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.103 4.103 14 C 0.055 3.945 15 H 0.126 0.874 16 O -0.335 6.335 17 C -0.046 4.046 18 O -0.286 6.286 19 C 0.024 3.976 20 C -0.089 4.089 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.116 4.116 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.209 0.791 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.954 -17.386 14.979 25.429 hybrid contribution -0.443 0.883 1.185 1.543 sum 10.511 -16.503 16.164 25.379 Atomic orbital electron populations 1.22368 0.87780 1.00297 1.01494 1.61981 1.07276 1.16116 1.40180 1.22423 0.98720 0.84948 1.00466 1.19075 0.96790 0.93985 0.91009 1.21195 1.35047 0.97818 1.01938 0.92877 1.24992 0.95312 0.98448 0.95580 1.69979 1.40835 1.36406 1.06014 0.86603 0.78919 0.84613 0.77906 1.20598 1.21262 1.19977 1.22664 0.95489 0.98731 0.93374 1.21903 0.94296 0.94768 0.83517 0.87394 1.86735 1.75436 1.33339 1.38008 1.23321 0.82188 0.99582 0.99546 1.88092 1.20589 1.76597 1.43324 1.21311 0.89678 0.96267 0.90314 1.19607 0.94103 0.95454 0.99732 1.21094 0.93225 0.97921 0.99400 1.21164 0.95574 0.98146 0.99320 1.21206 0.99756 0.94415 0.98027 1.21155 0.93344 0.99420 1.00326 1.21071 0.95736 0.97655 0.97090 0.96469 0.90191 0.92724 0.96367 0.92002 0.95525 0.96556 0.93038 0.91232 0.94500 0.79106 0.93139 0.92625 0.92628 0.92603 0.85894 0.85883 0.86039 0.85910 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.27 60.06 0.56 1.04 16 2 N -0.53 -9.83 4.61 -242.91 -1.12 -10.95 16 3 C 0.06 1.33 4.75 -3.82 -0.02 1.31 16 4 C 0.03 0.77 4.90 -27.88 -0.14 0.64 16 5 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 6 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.03 0.38 4.63 -3.82 -0.02 0.36 16 14 C 0.12 1.67 3.27 -26.73 -0.09 1.58 16 15 H 0.11 1.86 6.56 -51.93 -0.34 1.52 16 16 O -0.53 -8.52 13.20 -40.09 -0.53 -9.05 16 17 C 0.03 0.35 5.57 37.16 0.21 0.56 16 18 O -0.37 -4.87 10.29 -40.09 -0.41 -5.28 16 19 C 0.10 1.01 6.06 36.01 0.22 1.23 16 20 C -0.09 -0.95 5.51 -104.63 -0.58 -1.53 16 21 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 26 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 27 H 0.08 1.51 6.57 -51.93 -0.34 1.17 16 28 H 0.05 0.76 7.96 -51.93 -0.41 0.34 16 29 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.06 1.36 6.38 -51.93 -0.33 1.03 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.45 6.60 -51.93 -0.34 0.11 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 34 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 36 H 0.36 4.23 9.04 45.56 0.41 4.64 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -34.28 372.50 -9.75 -44.02 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.79 Total: 1.21 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.23 Total: -15.92 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.38 Total: -37.72 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.94 Total: -14.33 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.28 -9.75 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265184665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.069 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds