Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99602 * 2 1 4 4 C 1.53007 * 109.46839 * 293.95084 * 3 2 1 5 5 C 1.50695 * 109.46989 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99978 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99579 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99877 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47136 * 89.99884 * 9 7 5 11 11 H 1.48508 * 109.46755 * 209.99742 * 9 7 5 12 12 H 1.48493 * 109.47142 * 329.99467 * 9 7 5 13 13 C 1.46906 * 110.99902 * 123.94735 * 2 1 3 14 14 C 1.52999 * 109.46714 * 164.00873 * 13 2 1 15 15 H 1.09003 * 109.47243 * 58.53435 * 14 13 2 16 16 O 1.42893 * 109.47364 * 298.53120 * 14 13 2 17 17 C 1.53003 * 109.46908 * 178.53090 * 14 13 2 18 18 O 1.42901 * 109.47029 * 184.99878 * 17 14 13 19 19 C 1.42905 * 113.99623 * 179.97438 * 18 17 14 20 20 C 1.50703 * 109.46809 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99592 * 90.00215 * 20 19 18 22 22 C 1.38239 * 119.99995 * 179.97438 * 21 20 19 23 23 C 1.38237 * 119.99925 * 0.09578 * 22 21 20 24 24 C 1.38241 * 120.00012 * 359.86105 * 23 22 21 25 25 C 1.38229 * 120.00365 * 269.98213 * 20 19 18 26 26 H 1.09003 * 109.47666 * 302.02577 * 1 2 3 27 27 H 1.08998 * 109.47370 * 62.03008 * 1 2 3 28 28 H 1.09001 * 109.46860 * 182.02729 * 1 2 3 29 29 H 1.08999 * 109.47459 * 53.94773 * 3 2 1 30 30 H 1.09000 * 109.47201 * 173.95428 * 3 2 1 31 31 H 1.08999 * 109.46841 * 300.00068 * 4 3 2 32 32 H 1.09000 * 109.46943 * 60.00186 * 4 3 2 33 33 H 0.97003 * 119.99219 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47029 * 44.00785 * 13 2 1 35 35 H 1.09002 * 109.46999 * 284.00566 * 13 2 1 36 36 H 0.96694 * 114.00104 * 300.00717 * 16 14 13 37 37 H 1.09006 * 109.46689 * 65.00100 * 17 14 13 38 38 H 1.08998 * 109.47547 * 305.00099 * 17 14 13 39 39 H 1.09003 * 109.47048 * 60.00926 * 19 18 17 40 40 H 1.08993 * 109.47233 * 299.99843 * 19 18 17 41 41 H 1.07999 * 120.00545 * 359.70024 * 21 20 19 42 42 H 1.08002 * 120.00208 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.00415 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00148 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.99828 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 -1.3184 5 6 2.1718 3.4641 -1.3187 6 1 2.7197 3.8323 -0.4639 7 6 1.9659 4.2815 -2.4098 8 7 1.2982 3.8333 -3.4504 9 14 2.6365 6.0250 -2.4104 10 1 4.0079 6.0277 -2.9800 11 1 1.7568 6.8933 -3.2337 12 1 2.6776 6.5401 -1.0183 13 6 1.9954 -0.7659 1.1377 14 6 3.4728 -1.0839 0.8985 15 1 4.0283 -0.1549 0.7701 16 8 3.6034 -1.8835 -0.2786 17 6 4.0306 -1.8498 2.0998 18 8 5.4359 -2.0451 1.9294 19 6 6.0585 -2.7541 3.0026 20 6 7.5311 -2.9026 2.7190 21 6 8.4189 -1.9347 3.1502 22 6 9.7699 -2.0711 2.8905 23 6 10.2327 -3.1744 2.1981 24 6 9.3449 -4.1428 1.7677 25 6 7.9941 -4.0068 2.0282 26 1 -0.3634 0.5450 0.8713 27 1 -0.3634 0.4820 -0.9076 28 1 -0.3633 -1.0270 0.0364 29 1 1.5609 1.9274 0.8308 30 1 3.0796 1.3446 0.1082 31 1 2.0657 1.5015 -2.1492 32 1 0.5470 2.0844 -1.4266 33 1 1.1537 4.4083 -4.2182 34 1 1.4356 -1.6955 1.2401 35 1 1.8934 -0.1779 2.0499 36 1 3.1332 -2.7273 -0.2350 37 1 3.5356 -2.8181 2.1749 38 1 3.8510 -1.2783 3.0104 39 1 5.6057 -3.7412 3.0969 40 1 5.9210 -2.2009 3.9316 41 1 8.0568 -1.0698 3.6859 42 1 10.4635 -1.3148 3.2270 43 1 11.2880 -3.2809 1.9948 44 1 9.7065 -5.0049 1.2271 45 1 7.3004 -4.7629 1.6914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265184665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -96.371073 kcal Electronic energy + Delta-G solvation = -22742.977453 eV Core-core repulsion = 19338.331050 eV Total energy + Delta-G solvation = -3404.646402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36073 -39.71036 -38.38155 -36.97336 -35.11017 -33.04916 -32.04875 -31.80104 -30.94950 -27.90762 -27.21201 -26.34486 -24.15934 -23.49422 -22.85734 -22.19479 -21.40636 -18.67286 -17.92598 -17.85492 -17.47135 -16.92623 -16.61550 -16.52356 -16.27396 -16.10517 -15.65931 -15.35740 -14.99535 -14.73961 -14.30637 -14.25540 -14.13812 -13.72438 -13.61903 -13.24382 -13.11535 -12.94896 -12.85179 -12.73446 -12.59378 -12.37960 -11.97765 -11.92113 -11.83859 -11.61549 -11.36371 -11.20892 -10.87742 -10.60996 -10.54643 -9.83410 -9.76377 -9.12445 -8.20479 -6.32054 0.32816 0.48768 1.38633 1.41316 1.51787 2.39000 2.46683 2.94728 3.12598 3.28196 3.65028 3.79181 3.90809 4.00032 4.12083 4.13899 4.20873 4.27659 4.31970 4.33760 4.38420 4.43684 4.48991 4.51391 4.63262 4.64330 4.69654 4.76021 4.80115 5.01235 5.07038 5.08201 5.14145 5.15326 5.44852 5.53505 5.59668 5.65415 5.65539 5.78343 6.08520 6.09574 6.19573 6.31472 6.34631 6.85152 7.03223 7.36813 8.91922 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.002823 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.471806 B = 9914.406771 C =11234.929558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.551 5.551 3 C 0.079 3.921 4 C 0.038 3.962 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.261 1.261 13 C 0.031 3.969 14 C 0.115 3.885 15 H 0.070 0.930 16 O -0.562 6.562 17 C 0.039 3.961 18 O -0.400 6.400 19 C 0.100 3.900 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.123 4.123 24 C -0.133 4.133 25 C -0.113 4.113 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.023 0.977 30 H 0.055 0.945 31 H -0.014 1.014 32 H -0.003 1.003 33 H 0.264 0.736 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.382 0.618 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 -18.395 17.697 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.275 5.275 3 C -0.048 4.048 4 C 0.000 4.000 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.186 1.186 13 C -0.097 4.097 14 C 0.056 3.944 15 H 0.088 0.912 16 O -0.368 6.368 17 C -0.038 4.038 18 O -0.320 6.320 19 C 0.024 3.976 20 C -0.110 4.110 21 C -0.135 4.135 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.131 4.131 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.004 0.996 32 H 0.015 0.985 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.230 0.770 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.476 -18.013 16.762 27.150 hybrid contribution -0.589 0.982 0.609 1.297 sum 10.888 -17.031 17.371 26.652 Atomic orbital electron populations 1.22350 0.86731 1.02316 1.00254 1.61833 1.08388 1.14111 1.43185 1.22000 0.98448 0.86987 0.97414 1.18889 0.95020 0.93585 0.92491 1.21636 1.35371 0.99012 1.02439 0.92312 1.25996 0.95388 1.03419 0.94995 1.70120 1.41956 1.38332 1.06773 0.85418 0.78254 0.78578 0.78612 1.19884 1.20457 1.18558 1.22730 0.95394 0.99587 0.91965 1.21818 0.94295 0.93820 0.84513 0.91212 1.86679 1.76188 1.34665 1.39266 1.23228 0.81624 1.00779 0.98177 1.88040 1.21625 1.77366 1.44981 1.21448 0.89238 0.97040 0.89853 1.19860 0.94737 0.96000 1.00438 1.21325 0.93906 0.98274 1.00001 1.21474 0.95620 0.98857 0.99253 1.21557 1.01014 0.94055 0.97445 1.21489 0.93160 1.00200 1.00192 1.21324 0.96563 0.97907 0.97283 0.95504 0.93473 0.89161 0.95930 0.92649 0.99584 0.98504 0.92729 0.87654 0.93121 0.77025 0.90212 0.90965 0.90861 0.91367 0.85419 0.84164 0.83800 0.83903 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 9.27 127.69 1.18 2.20 16 2 N -0.55 -20.12 4.61 -922.42 -4.25 -24.38 16 3 C 0.08 3.52 4.75 86.30 0.41 3.93 16 4 C 0.04 2.12 4.90 29.85 0.15 2.26 16 5 C -0.55 -32.58 9.11 25.60 0.23 -32.35 16 6 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 8 N -0.93 -58.85 13.29 21.45 0.28 -58.57 16 9 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 13 C 0.03 0.82 4.63 86.30 0.40 1.22 16 14 C 0.12 3.24 3.27 30.59 0.10 3.34 16 15 H 0.07 2.47 6.56 -2.39 -0.02 2.46 16 16 O -0.56 -17.74 13.20 -144.34 -1.90 -19.65 16 17 C 0.04 0.79 5.57 71.98 0.40 1.19 16 18 O -0.40 -10.22 10.29 -144.34 -1.49 -11.71 16 19 C 0.10 1.87 6.06 71.24 0.43 2.30 16 20 C -0.11 -2.30 5.51 -19.87 -0.11 -2.41 16 21 C -0.12 -2.35 9.70 22.27 0.22 -2.13 16 22 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 25 C -0.11 -2.16 9.70 22.27 0.22 -1.95 16 26 H 0.03 0.81 8.13 -2.39 -0.02 0.79 16 27 H 0.05 1.82 6.57 -2.39 -0.02 1.81 16 28 H 0.09 2.27 7.96 -2.39 -0.02 2.25 16 29 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 30 H 0.06 2.51 6.38 -2.39 -0.02 2.50 16 31 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.00 -0.20 6.60 -2.39 -0.02 -0.21 16 33 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.11 2.02 7.87 -2.39 -0.02 2.01 16 35 H 0.05 1.22 8.05 -2.39 -0.02 1.20 16 36 H 0.38 8.31 9.04 -74.06 -0.67 7.64 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 40 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 41 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -76.63 372.50 -0.29 -76.91 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.29 Total: 17.51 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.76 Total: -27.85 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.97 Total: -82.94 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -3.39 Total: -31.35 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.63 -0.29 -76.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265184665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.459 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds