Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.36936 * 119.99550 * 84.80287 * 3 2 1 5 5 H 1.08000 * 119.99726 * 35.55961 * 4 3 2 6 6 C 1.38811 * 120.00058 * 215.27925 * 4 3 2 7 7 N 1.31616 * 120.00098 * 214.26328 * 6 4 3 8 8 Si 1.86806 * 119.99824 * 34.26170 * 6 4 3 9 9 H 1.48494 * 109.47115 * 86.68168 * 8 6 4 10 10 H 1.48497 * 109.46874 * 206.68453 * 8 6 4 11 11 H 1.48498 * 109.47066 * 326.68164 * 8 6 4 12 12 C 1.46495 * 120.00116 * 264.80711 * 3 2 1 13 13 C 1.52996 * 109.47139 * 274.84403 * 12 3 2 14 14 H 1.08997 * 109.47339 * 60.00241 * 13 12 3 15 15 O 1.42900 * 109.47225 * 300.00184 * 13 12 3 16 16 C 1.53002 * 109.47279 * 180.02562 * 13 12 3 17 17 O 1.42899 * 109.47198 * 185.00129 * 16 13 12 18 18 C 1.35903 * 116.99775 * 180.02562 * 17 16 13 19 19 C 1.38725 * 120.05813 * 359.72524 * 18 17 16 20 20 C 1.38144 * 119.94599 * 179.74818 * 19 18 17 21 21 C 1.50696 * 119.97723 * 180.27520 * 20 19 18 22 22 C 1.38266 * 120.05338 * 0.50206 * 20 19 18 23 23 C 1.38271 * 120.11418 * 359.77091 * 22 20 19 24 24 C 1.50694 * 119.97468 * 179.97438 * 23 22 20 25 25 C 1.38142 * 120.05194 * 359.97438 * 23 22 20 26 26 H 1.09001 * 109.46753 * 304.60827 * 1 2 3 27 27 H 1.08996 * 109.47261 * 64.60411 * 1 2 3 28 28 H 1.09001 * 109.46704 * 184.60783 * 1 2 3 29 29 H 1.09000 * 109.47118 * 240.00912 * 2 1 3 30 30 H 1.08995 * 109.47916 * 120.00281 * 2 1 3 31 31 H 0.97002 * 120.00016 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47318 * 34.84619 * 12 3 2 33 33 H 1.09004 * 109.47150 * 154.84285 * 12 3 2 34 34 H 0.96707 * 113.99969 * 299.99929 * 15 13 12 35 35 H 1.09003 * 109.47153 * 305.00025 * 16 13 12 36 36 H 1.08998 * 109.47321 * 65.00030 * 16 13 12 37 37 H 1.07998 * 120.02555 * 359.97438 * 19 18 17 38 38 H 1.09005 * 109.47069 * 270.22931 * 21 20 19 39 39 H 1.09000 * 109.47161 * 30.22660 * 21 20 19 40 40 H 1.08993 * 109.47566 * 150.22541 * 21 20 19 41 41 H 1.08001 * 119.94903 * 179.74811 * 22 20 19 42 42 H 1.08997 * 109.47410 * 269.97952 * 24 23 22 43 43 H 1.09003 * 109.47074 * 29.98012 * 24 23 22 44 44 H 1.09005 * 109.47098 * 149.97677 * 24 23 22 45 45 H 1.08003 * 120.02902 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1453 2.0625 1.1811 5 1 2.4539 1.5407 2.0749 6 6 1.8830 3.4248 1.2282 7 7 2.5769 4.2011 2.0332 8 14 0.5450 4.1562 0.1491 9 1 -0.7618 4.0610 0.8479 10 1 0.8560 5.5817 -0.1272 11 1 0.4773 3.4072 -1.1314 12 6 2.3708 2.0336 -1.2635 13 6 3.8131 1.6822 -1.6339 14 1 3.9070 0.6019 -1.7442 15 8 4.6933 2.1340 -0.6028 16 6 4.1814 2.3640 -2.9531 17 8 5.4857 1.9439 -3.3586 18 6 5.9675 2.4612 -4.5193 19 6 5.1983 3.3502 -5.2559 20 6 5.6924 3.8786 -6.4327 21 6 4.8600 4.8493 -7.2302 22 6 6.9482 3.5141 -6.8821 23 6 7.7145 2.6237 -6.1527 24 6 9.0825 2.2281 -6.6456 25 6 7.2270 2.0966 -4.9725 26 1 -0.3633 0.5837 0.8458 27 1 -0.3633 0.4407 -0.9283 28 1 -0.3633 -1.0244 0.0826 29 1 1.8934 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 2.3933 5.1530 2.0664 32 1 1.6994 1.6890 -2.0500 33 1 2.2769 3.1140 -1.1532 34 1 4.6625 3.0884 -0.4495 35 1 3.4566 2.0887 -3.7192 36 1 4.1738 3.4456 -2.8177 37 1 4.2156 3.6319 -4.9076 38 1 4.2455 4.3002 -7.9437 39 1 4.2166 5.4152 -6.5565 40 1 5.5157 5.5345 -7.7673 41 1 7.3311 3.9251 -7.8045 42 1 8.9982 1.3494 -7.2850 43 1 9.5158 3.0510 -7.2142 44 1 9.7230 1.9979 -5.7942 45 1 7.8258 1.4009 -4.4033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265383429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = -50.034429 kcal Electronic energy + Delta-G solvation = -23776.446780 eV Core-core repulsion = 20373.809686 eV Total energy + Delta-G solvation = -3402.637095 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19931 -38.17921 -36.92525 -34.95269 -33.65517 -31.95480 -31.25172 -30.36689 -28.86381 -27.35342 -26.99322 -25.45907 -23.75105 -21.91289 -21.65253 -20.47181 -20.04013 -17.62755 -16.91765 -16.26283 -16.17265 -15.96345 -15.25130 -14.95376 -14.52740 -14.19525 -13.94375 -13.68252 -13.64833 -13.38420 -13.19732 -13.13227 -12.88863 -12.67871 -12.47578 -12.10428 -11.94944 -11.79539 -11.61580 -11.51099 -11.35865 -11.00431 -10.76157 -10.68826 -10.58120 -10.46125 -10.07927 -10.02541 -9.46365 -9.31804 -8.68728 -8.44908 -8.10410 -6.87086 -6.07437 -3.31686 1.26061 1.44370 3.26039 3.32926 3.43044 3.48306 3.68085 4.50147 4.62867 4.67323 4.81870 5.00770 5.04781 5.12060 5.20738 5.22895 5.27540 5.30687 5.40032 5.40500 5.45635 5.50214 5.61876 5.65217 5.70718 5.77420 5.87430 5.93064 5.96918 6.08750 6.23419 6.27546 6.33053 6.42485 6.45511 6.51034 6.55125 6.70843 6.79844 6.80392 7.04023 7.55499 7.99034 8.37984 8.52492 8.97425 9.70378 10.12222 11.08129 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.003686 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.183650 B = 7593.884796 C = 7944.904259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.590 5.590 4 C -0.257 4.257 5 H 0.076 0.924 6 C 0.041 3.959 7 N -0.878 5.878 8 Si 0.838 3.162 9 H -0.289 1.289 10 H -0.297 1.297 11 H -0.264 1.264 12 C 0.123 3.877 13 C 0.092 3.908 14 H 0.093 0.907 15 O -0.532 6.532 16 C 0.025 3.975 17 O -0.301 6.301 18 C 0.144 3.856 19 C -0.219 4.219 20 C -0.045 4.045 21 C -0.115 4.115 22 C -0.168 4.168 23 C -0.047 4.047 24 C -0.113 4.113 25 C -0.163 4.163 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.262 0.738 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.373 0.627 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -1.878 -18.686 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.311 5.311 4 C -0.385 4.385 5 H 0.093 0.907 6 C -0.160 4.160 7 N -0.518 5.518 8 Si 0.666 3.334 9 H -0.217 1.217 10 H -0.224 1.224 11 H -0.190 1.190 12 C -0.004 4.004 13 C 0.029 3.971 14 H 0.111 0.889 15 O -0.336 6.336 16 C -0.051 4.051 17 O -0.214 6.214 18 C 0.098 3.902 19 C -0.238 4.238 20 C -0.045 4.045 21 C -0.172 4.172 22 C -0.186 4.186 23 C -0.047 4.047 24 C -0.170 4.170 25 C -0.182 4.182 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.219 0.781 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.616 -2.496 -18.392 19.705 hybrid contribution -1.358 1.397 -0.695 2.068 sum 5.258 -1.099 -19.087 19.828 Atomic orbital electron populations 1.22324 0.99641 0.99505 1.01439 1.20879 0.91719 0.86537 0.99090 1.43927 1.73348 1.11095 1.02761 1.18622 1.40353 0.91266 0.88304 0.90652 1.25372 0.98045 0.96121 0.96431 1.70100 1.36640 1.04533 1.40536 0.87619 0.86225 0.77666 0.81935 1.21659 1.22357 1.18958 1.21827 0.91434 0.98075 0.89087 1.22794 0.92632 0.98902 0.82805 0.88883 1.86571 1.62804 1.28333 1.55875 1.23911 0.82045 1.00078 0.99089 1.86218 1.33980 1.65329 1.35834 1.19119 0.93035 0.92174 0.85856 1.21157 1.01509 1.03107 0.98007 1.19658 0.94480 0.96128 0.94201 1.20811 0.99281 0.97583 0.99534 1.20732 0.94965 1.01805 1.01131 1.19642 0.96085 0.95370 0.93587 1.20788 0.92895 1.01719 1.01560 1.20287 0.94837 1.04925 0.98117 0.92320 0.94230 0.94153 0.94311 0.93236 0.92853 0.93886 0.91916 0.78059 0.91847 0.91972 0.85567 0.91059 0.91449 0.91448 0.86288 0.91040 0.91473 0.91309 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.14 2.80 6.42 -4.04 -0.03 2.77 16 3 N -0.59 -13.45 2.01 -173.24 -0.35 -13.80 16 4 C -0.26 -6.91 9.40 -15.06 -0.14 -7.05 16 5 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 6 C 0.04 1.13 5.01 -17.43 -0.09 1.04 16 7 N -0.88 -25.52 13.97 55.49 0.78 -24.75 16 8 Si 0.84 20.46 26.46 -169.99 -4.50 15.96 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.03 5.58 56.52 0.32 -5.72 16 12 C 0.12 2.50 3.56 -4.05 -0.01 2.48 16 13 C 0.09 1.71 3.52 -26.73 -0.09 1.62 16 14 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 15 O -0.53 -11.56 12.81 -40.11 -0.51 -12.08 16 16 C 0.03 0.40 4.37 37.16 0.16 0.56 16 17 O -0.30 -5.09 10.10 -24.31 -0.25 -5.34 16 18 C 0.14 2.19 6.69 -39.22 -0.26 1.92 16 19 C -0.22 -2.98 8.69 -39.44 -0.34 -3.33 16 20 C -0.04 -0.53 5.88 -104.65 -0.62 -1.14 16 21 C -0.12 -1.04 10.01 36.00 0.36 -0.68 16 22 C -0.17 -1.88 9.35 -39.56 -0.37 -2.25 16 23 C -0.05 -0.54 5.88 -104.65 -0.62 -1.15 16 24 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 25 C -0.16 -2.21 9.64 -39.43 -0.38 -2.59 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.67 8.03 -51.93 -0.42 0.25 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.06 1.36 4.33 -51.93 -0.22 1.14 16 34 H 0.37 7.78 9.05 45.56 0.41 8.20 16 35 H 0.06 0.88 7.65 -51.93 -0.40 0.49 16 36 H 0.06 0.95 7.67 -51.93 -0.40 0.56 16 37 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 44 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 45 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -30.54 366.67 -7.89 -38.43 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.90 Total: 7.07 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.69 Total: -11.02 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.43 Total: -38.55 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.76 Total: -17.42 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.50 Total: 15.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.54 -7.89 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265383429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.604 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds