Wall clock time and date at job start Tue Mar 31 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.36936 * 119.99550 * 84.80287 * 3 2 1 5 5 H 1.08000 * 119.99726 * 35.55961 * 4 3 2 6 6 C 1.38811 * 120.00058 * 215.27925 * 4 3 2 7 7 N 1.31616 * 120.00098 * 214.26328 * 6 4 3 8 8 Si 1.86806 * 119.99824 * 34.26170 * 6 4 3 9 9 H 1.48494 * 109.47115 * 86.68168 * 8 6 4 10 10 H 1.48497 * 109.46874 * 206.68453 * 8 6 4 11 11 H 1.48498 * 109.47066 * 326.68164 * 8 6 4 12 12 C 1.46495 * 120.00116 * 264.80711 * 3 2 1 13 13 C 1.52996 * 109.47139 * 274.84403 * 12 3 2 14 14 H 1.08997 * 109.47339 * 60.00241 * 13 12 3 15 15 O 1.42900 * 109.47225 * 300.00184 * 13 12 3 16 16 C 1.53002 * 109.47279 * 180.02562 * 13 12 3 17 17 O 1.42899 * 109.47198 * 185.00129 * 16 13 12 18 18 C 1.35903 * 116.99775 * 180.02562 * 17 16 13 19 19 C 1.38725 * 120.05813 * 359.72524 * 18 17 16 20 20 C 1.38144 * 119.94599 * 179.74818 * 19 18 17 21 21 C 1.50696 * 119.97723 * 180.27520 * 20 19 18 22 22 C 1.38266 * 120.05338 * 0.50206 * 20 19 18 23 23 C 1.38271 * 120.11418 * 359.77091 * 22 20 19 24 24 C 1.50694 * 119.97468 * 179.97438 * 23 22 20 25 25 C 1.38142 * 120.05194 * 359.97438 * 23 22 20 26 26 H 1.09001 * 109.46753 * 304.60827 * 1 2 3 27 27 H 1.08996 * 109.47261 * 64.60411 * 1 2 3 28 28 H 1.09001 * 109.46704 * 184.60783 * 1 2 3 29 29 H 1.09000 * 109.47118 * 240.00912 * 2 1 3 30 30 H 1.08995 * 109.47916 * 120.00281 * 2 1 3 31 31 H 0.97002 * 120.00016 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47318 * 34.84619 * 12 3 2 33 33 H 1.09004 * 109.47150 * 154.84285 * 12 3 2 34 34 H 0.96707 * 113.99969 * 299.99929 * 15 13 12 35 35 H 1.09003 * 109.47153 * 305.00025 * 16 13 12 36 36 H 1.08998 * 109.47321 * 65.00030 * 16 13 12 37 37 H 1.07998 * 120.02555 * 359.97438 * 19 18 17 38 38 H 1.09005 * 109.47069 * 270.22931 * 21 20 19 39 39 H 1.09000 * 109.47161 * 30.22660 * 21 20 19 40 40 H 1.08993 * 109.47566 * 150.22541 * 21 20 19 41 41 H 1.08001 * 119.94903 * 179.74811 * 22 20 19 42 42 H 1.08997 * 109.47410 * 269.97952 * 24 23 22 43 43 H 1.09003 * 109.47074 * 29.98012 * 24 23 22 44 44 H 1.09005 * 109.47098 * 149.97677 * 24 23 22 45 45 H 1.08003 * 120.02902 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1453 2.0625 1.1811 5 1 2.4539 1.5407 2.0749 6 6 1.8830 3.4248 1.2282 7 7 2.5769 4.2011 2.0332 8 14 0.5450 4.1562 0.1491 9 1 -0.7618 4.0610 0.8479 10 1 0.8560 5.5817 -0.1272 11 1 0.4773 3.4072 -1.1314 12 6 2.3708 2.0336 -1.2635 13 6 3.8131 1.6822 -1.6339 14 1 3.9070 0.6019 -1.7442 15 8 4.6933 2.1340 -0.6028 16 6 4.1814 2.3640 -2.9531 17 8 5.4857 1.9439 -3.3586 18 6 5.9675 2.4612 -4.5193 19 6 5.1983 3.3502 -5.2559 20 6 5.6924 3.8786 -6.4327 21 6 4.8600 4.8493 -7.2302 22 6 6.9482 3.5141 -6.8821 23 6 7.7145 2.6237 -6.1527 24 6 9.0825 2.2281 -6.6456 25 6 7.2270 2.0966 -4.9725 26 1 -0.3633 0.5837 0.8458 27 1 -0.3633 0.4407 -0.9283 28 1 -0.3633 -1.0244 0.0826 29 1 1.8934 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 2.3933 5.1530 2.0664 32 1 1.6994 1.6890 -2.0500 33 1 2.2769 3.1140 -1.1532 34 1 4.6625 3.0884 -0.4495 35 1 3.4566 2.0887 -3.7192 36 1 4.1738 3.4456 -2.8177 37 1 4.2156 3.6319 -4.9076 38 1 4.2455 4.3002 -7.9437 39 1 4.2166 5.4152 -6.5565 40 1 5.5157 5.5345 -7.7673 41 1 7.3311 3.9251 -7.8045 42 1 8.9982 1.3494 -7.2850 43 1 9.5158 3.0510 -7.2142 44 1 9.7230 1.9979 -5.7942 45 1 7.8258 1.4009 -4.4033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265383429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:27 Heat of formation + Delta-G solvation = -68.856286 kcal Electronic energy + Delta-G solvation = -23777.262957 eV Core-core repulsion = 20373.809686 eV Total energy + Delta-G solvation = -3403.453272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25305 -39.46524 -38.35173 -36.63756 -34.46979 -33.96440 -32.48414 -31.68486 -30.40578 -28.13329 -27.99064 -26.94219 -25.46711 -23.30084 -22.70649 -21.76398 -21.43603 -19.16162 -18.31240 -17.65728 -17.53979 -16.94434 -16.86608 -16.43217 -16.13886 -15.58136 -15.25762 -14.99201 -14.77731 -14.58779 -14.41606 -14.12298 -14.00181 -13.81692 -13.78025 -13.43666 -13.32827 -12.99068 -12.73603 -12.69371 -12.63951 -12.39288 -12.35020 -12.15996 -12.03926 -11.72711 -11.61187 -11.60201 -11.26587 -10.94955 -10.50546 -9.59537 -9.11663 -8.75126 -8.18636 -5.40239 0.33220 0.47618 1.33964 1.46811 1.51112 2.11589 2.46163 2.74108 3.00487 3.41192 3.63052 3.75567 3.84659 3.92095 4.05334 4.08353 4.24372 4.31012 4.38274 4.40789 4.41919 4.44396 4.50326 4.66464 4.69225 4.79607 4.81762 4.82691 4.85182 4.89702 4.98428 5.05297 5.10744 5.14565 5.27072 5.30593 5.37486 5.54610 5.55982 5.65940 5.89632 5.96980 6.24277 6.45921 6.86384 7.05183 7.70069 8.12530 9.01270 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.003686 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.183650 B = 7593.884796 C = 7944.904259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 N -0.603 5.603 4 C -0.247 4.247 5 H 0.028 0.972 6 C -0.004 4.004 7 N -0.927 5.927 8 Si 0.904 3.096 9 H -0.301 1.301 10 H -0.300 1.300 11 H -0.234 1.234 12 C 0.121 3.879 13 C 0.096 3.904 14 H 0.093 0.907 15 O -0.557 6.557 16 C 0.036 3.964 17 O -0.325 6.325 18 C 0.116 3.884 19 C -0.233 4.233 20 C -0.049 4.049 21 C -0.114 4.114 22 C -0.169 4.169 23 C -0.047 4.047 24 C -0.112 4.112 25 C -0.184 4.184 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.372 0.628 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.148 0.852 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 -1.907 -22.537 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 N -0.325 5.325 4 C -0.377 4.377 5 H 0.046 0.954 6 C -0.202 4.202 7 N -0.569 5.569 8 Si 0.731 3.269 9 H -0.229 1.229 10 H -0.227 1.227 11 H -0.157 1.157 12 C -0.006 4.006 13 C 0.034 3.966 14 H 0.110 0.890 15 O -0.362 6.362 16 C -0.040 4.040 17 O -0.238 6.238 18 C 0.071 3.929 19 C -0.252 4.252 20 C -0.049 4.049 21 C -0.171 4.171 22 C -0.187 4.187 23 C -0.047 4.047 24 C -0.168 4.168 25 C -0.203 4.203 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.218 0.782 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.165 0.835 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.100 -2.557 -22.293 23.254 hybrid contribution -1.076 1.315 0.469 1.763 sum 5.025 -1.241 -21.824 22.430 Atomic orbital electron populations 1.22200 0.97900 1.01182 1.00674 1.21033 0.93078 0.84809 0.99859 1.44029 1.74129 1.12054 1.02263 1.18371 1.39270 0.91347 0.88713 0.95382 1.25802 0.99492 0.96441 0.98490 1.70201 1.38414 1.04748 1.43583 0.86574 0.82040 0.76896 0.81435 1.22886 1.22666 1.15701 1.21892 0.92896 0.97154 0.88620 1.22698 0.91349 0.99023 0.83576 0.88953 1.86539 1.63863 1.28366 1.57430 1.23662 0.82680 0.99696 0.98002 1.86140 1.34321 1.66188 1.37201 1.19393 0.94059 0.93647 0.85802 1.21305 1.01745 1.03304 0.98799 1.20062 0.95103 0.96062 0.93720 1.20871 0.99382 0.97306 0.99497 1.21140 0.94587 1.01084 1.01858 1.20039 0.97422 0.94641 0.92609 1.20861 0.91048 1.02914 1.02004 1.20499 0.94709 1.05736 0.99310 0.94973 0.93313 0.90955 0.91452 0.94617 0.93014 0.90765 0.93308 0.78157 0.89409 0.91778 0.85193 0.89791 0.91451 0.89734 0.83465 0.89736 0.89650 0.91167 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.37 10.21 71.98 0.73 -4.63 16 2 C 0.14 5.16 6.42 86.38 0.55 5.71 16 3 N -0.60 -27.18 2.01 -702.01 -1.41 -28.58 16 4 C -0.25 -13.66 9.40 84.03 0.79 -12.87 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 6 C 0.00 -0.25 5.01 84.86 0.43 0.17 16 7 N -0.93 -55.83 13.97 21.65 0.30 -55.53 16 8 Si 0.90 42.58 26.46 68.60 1.82 44.39 16 9 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 11 H -0.23 -9.72 5.58 99.48 0.56 -9.17 16 12 C 0.12 4.69 3.56 86.38 0.31 5.00 16 13 C 0.10 3.51 3.52 30.59 0.11 3.62 16 14 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 15 O -0.56 -24.88 12.81 -144.32 -1.85 -26.73 16 16 C 0.04 1.09 4.37 71.98 0.31 1.41 16 17 O -0.32 -10.99 10.10 -87.80 -0.89 -11.88 16 18 C 0.12 3.48 6.69 22.51 0.15 3.63 16 19 C -0.23 -6.04 8.69 22.36 0.19 -5.85 16 20 C -0.05 -1.05 5.88 -19.88 -0.12 -1.17 16 21 C -0.11 -1.69 10.01 71.23 0.71 -0.98 16 22 C -0.17 -3.29 9.35 22.28 0.21 -3.08 16 23 C -0.05 -0.99 5.88 -19.88 -0.12 -1.11 16 24 C -0.11 -1.57 10.01 71.23 0.71 -0.85 16 25 C -0.18 -4.93 9.64 22.37 0.22 -4.71 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 30 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 33 H 0.05 2.03 4.33 -2.38 -0.01 2.02 16 34 H 0.37 16.23 9.05 -74.05 -0.67 15.56 16 35 H 0.09 2.24 7.65 -2.39 -0.02 2.22 16 36 H 0.06 1.92 7.67 -2.39 -0.02 1.91 16 37 H 0.13 3.13 6.30 -2.91 -0.02 3.12 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 40 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 41 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 44 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 45 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -68.24 366.67 3.31 -64.93 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.14 Total: 29.11 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.20 Total: -15.72 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.11 Total: -84.11 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -2.74 Total: -38.60 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.82 Total: 44.39 kcal Total: -68.24 3.31 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265383429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.924 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds